Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000395.1

Orthogroup ID

OG0003623

Physical Location & Seq

Genomic Coordinates Reverse (-)

36829 .. 38181

Gene Structure 1353 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000395.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

atggcagacaagccaagccgagctctagttatgtacggagatgggttggcgcgtttcgtcaatccatcacacacccatctccattctctggcttccaaagcttcctgtggcttcttgagcctccccaatgctcctccctcagaaagcgaggatgagagaatagttagagagtttgcagtactggtggatgcatttgaagcttacactaatacaagtggaagtaccaccaaagaagaaggtggggagaaatccaccatatccgaaagattcatggggatgaaagctgctatagttacaaacaattcaagtttgaagtcttttggtaccaaacttggtttcagcgtgttgccaaatgatggttttatcaaaagcagtgaggcccaagctgagctgccagttgatactgtggcatctgaattgctgaagttgcttggatttcaagaaggaaagacactggagtcgagtcggtatgatttagtctttgtgcatgttggggctggtgaggtgaatgttaagaatgacaaggctattgcagatgatgtggagtatcccaatgctttgattggtgctataatgaatataggcaaacctggaactgaaatcagtctccgtttgcacttgtctgttgtaatgagctatgggggtaccttggagaaagatgatcccgacttgttgttttcaatcagtaaagataactccaatctttcaaagctcgttcctcaccaaagttataccatgaaaggagaggttccgcggaaggatgtcaggcaccattccccaatgttactggctcagtggcaatatgctgtcacccgcaaggacatggcagagacattctcttttaaagatttcaaggaggtacaattttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

289

Amino Acids

31.66

Weight (kDa)

5.66

Isoelectric Point (pI)

27.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003623)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11810
fragaria_vesca	FvH4_2g31970 FvH4_2g31970 FvH4_2g31970
malus_domestica	MD08G1060900.v1.1 MD15G1060500.v1.1
prunus_persica	Prupe.1G412500_v2.0.a1 Prupe.1G412500_v2.0.a1 Prupe.1G412500_v2.0.a1 Prupe.1G412500_v2.0.a1 Prupe.1G412500_v2.0.a1
pyrus_communis	pycom15g05680
rosa_chinensis	RchiOBHm_Chr6g0290791 RchiOBHm_Chr6g0310851
rosa_laevigata	RLG00000010457 RLG00000012175
rosa_multiflora	Rmu_sc0009490.1_g000001 Rmu_sc0027713.1_g000004 Rmu_ssc0000395.1_g000007
rosa_roxburghii	Rroxscaffold_7G00158250 Rroxscaffold_7G00176730
rosa_rugosa	Rorug06G0214600 Rorug06G0214700 Rorug06G0383500 Rorug06G0383500
rosa_samantha	Rh6AG325400 Rh6AG497200 Rh6BG333000 Rh6BG507200 Rh6CG338600 Rh6CG513200 Rh6DG326100 Rh6DG499900
rosa_wichuraiana	Rw6G028260 Rw6G043300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	457
Acc65I	GGTACC	2 cut(s)	323, 644
AccB1I	GGYRCC	3 cut(s)	323, 644, 768
AccB7I	CCANNNNNTGG	2 cut(s)	88, 356
AccII	CGCG	2 cut(s)	52, 754
AciI	CCGC	3 cut(s)	752, 754, 814
AclWI	GGATC	1 cut(s)	656
AcuI	CTGAAG	1 cut(s)	443
AfaI	GTAC	6 cut(s)	35, 180, 223, 325, 646, 861
AfiI	CCNNNNNNNGG	2 cut(s)	88, 356
AgsI	TTSAA	7 cut(s)	197, 306, 313, 440, 681, 708, 853
AjnI	CCWGG	1 cut(s)	589
AjuI	GAANNNNNNNTTGG	2 cut(s)	320, 352
AluBI	AGCT	8 cut(s)	23, 101, 200, 284, 386, 391, 636, 712
AluI	AGCT	8 cut(s)	23, 101, 200, 284, 386, 391, 636, 712
Alw21I	GWGCWC	1 cut(s)	25
Alw26I	GTCTC	2 cut(s)	611, 824
AlwI	GGATC	1 cut(s)	656
AoxI	GGCC	1 cut(s)	378
ApeKI	GCWGC	2 cut(s)	284, 391
Asp718I	GGTACC	2 cut(s)	323, 644
AspLEI	GCGC	1 cut(s)	52
AspS9I	GGNCC	1 cut(s)	379
AsuHPI	GGTGA	4 cut(s)	512, 517, 713, 802
BanI	GGYRCC	3 cut(s)	323, 644, 768
BanII	GRGCYC	1 cut(s)	25
Bbv12I	GWGCWC	1 cut(s)	25
BbvI	GCAGC	2 cut(s)	271, 378
BccI	CCATC	4 cut(s)	35, 73, 84, 350
BciT130I	CCWGG	1 cut(s)	591
BciVI	GTATCC	1 cut(s)	558
BcoDI	GTCTC	2 cut(s)	611, 824
BfaI	CTAG	1 cut(s)	26
BfmI	CTRYAG	1 cut(s)	288
BfuI	GTATCC	1 cut(s)	558
BisI	GCNGC	2 cut(s)	285, 392
BlpI	GCTNAGC	1 cut(s)	387
BlsI	GCNGC	2 cut(s)	286, 393
BmcAI	AGTACT	1 cut(s)	180
Bme1390I	CCNGG	1 cut(s)	591
BmgT120I	GGNCC	1 cut(s)	379
BmiI	GGNNCC	4 cut(s)	325, 646, 750, 770
BmrFI	CCNGG	1 cut(s)	591
BmsI	GCATC	2 cut(s)	178, 419
BplI	GAGNNNNNCTC	2 cut(s)	821, 853
BpmI	CTGGAG	1 cut(s)	476
Bpu1102I	GCTNAGC	1 cut(s)	387
BpuEI	CTTGAG	1 cut(s)	136
BsaJI	CCNNGG	2 cut(s)	648, 752
Bsc4I	CCNNNNNNNGG	2 cut(s)	88, 356
Bse1I	ACTGG	4 cut(s)	186, 395, 459, 792
BseBI	CCWGG	1 cut(s)	591
BseDI	CCNNGG	2 cut(s)	648, 752
BseGI	GGATG	4 cut(s)	157, 193, 282, 766
BseLI	CCNNNNNNNGG	2 cut(s)	88, 356
BseMII	CTCAG	3 cut(s)	153, 378, 806
BseNI	ACTGG	4 cut(s)	186, 395, 459, 792
BseRI	GAGGAG	1 cut(s)	123
BseXI	GCAGC	2 cut(s)	271, 378
Bsh1236I	CGCG	2 cut(s)	52, 754
BshFI	GGCC	1 cut(s)	380
BshNI	GGYRCC	3 cut(s)	323, 644, 768
BsiHKAI	GWGCWC	1 cut(s)	25
BslI	CCNNNNNNNGG	2 cut(s)	88, 356
BsmAI	GTCTC	2 cut(s)	611, 824
BsnI	GGCC	1 cut(s)	380
Bsp1286I	GDGCHC	1 cut(s)	25
Bsp143I	GATC	1 cut(s)	661
Bsp1720I	GCTNAGC	1 cut(s)	387
BspACI	CCGC	3 cut(s)	752, 754, 814
BspANI	GGCC	1 cut(s)	380
BspCNI	CTCAG	3 cut(s)	152, 379, 805
BspFNI	CGCG	2 cut(s)	52, 754
BspLI	GGNNCC	4 cut(s)	325, 646, 750, 770
BspPI	GGATC	1 cut(s)	656
BspT107I	GGYRCC	3 cut(s)	323, 644, 768
BsrI	ACTGG	4 cut(s)	186, 395, 459, 792
BssECI	CCNNGG	2 cut(s)	648, 752
BssMI	GATC	1 cut(s)	661
BssT1I	CCWWGG	1 cut(s)	648
Bst2UI	CCWGG	1 cut(s)	591
Bst4CI	ACNGT	1 cut(s)	406
BstDEI	CTNAG	3 cut(s)	139, 387, 792
BstDSI	CCRYGG	1 cut(s)	752
BstF5I	GGATG	4 cut(s)	157, 193, 282, 766
BstFNI	CGCG	2 cut(s)	52, 754
BstHHI	GCGC	1 cut(s)	52
BstKTI	GATC	1 cut(s)	664
BstMAI	GTCTC	2 cut(s)	611, 824
BstMBI	GATC	1 cut(s)	661
BstMWI	GCNNNNNNNGC	4 cut(s)	98, 117, 197, 427
BstNI	CCWGG	1 cut(s)	591
BstNSI	RCATGY	1 cut(s)	491
BstSCI	CCNGG	1 cut(s)	589
BstSFI	CTRYAG	1 cut(s)	288
BstUI	CGCG	2 cut(s)	52, 754
BstV1I	GCAGC	2 cut(s)	271, 378
BsuI	GTATCC	1 cut(s)	558
BsuRI	GGCC	1 cut(s)	380
BtgI	CCRYGG	1 cut(s)	752
BtsCI	GGATG	4 cut(s)	157, 193, 282, 766
BtsI	GCAGTG	1 cut(s)	379
BtsIMutI	CAGTG	3 cut(s)	379, 452, 800
CfoI	GCGC	1 cut(s)	52
Cfr13I	GGNCC	1 cut(s)	379
Cfr42I	CCGCGG	1 cut(s)	755
Csp6I	GTAC	6 cut(s)	34, 179, 222, 324, 645, 860
CviAII	CATG	4 cut(s)	271, 488, 736, 823
CviQI	GTAC	6 cut(s)	34, 179, 222, 324, 645, 860
DdeI	CTNAG	3 cut(s)	139, 387, 792
DpnI	GATC	1 cut(s)	663
DpnII	GATC	1 cut(s)	661
DraI	TTTAAA	1 cut(s)	844
DrdI	GACNNNNNNGTC	1 cut(s)	457
DseDI	GACNNNNNNGTC	1 cut(s)	457
Ecl136II	GAGCTC	1 cut(s)	23
Eco130I	CCWWGG	1 cut(s)	648
Eco24I	GRGCYC	1 cut(s)	25
Eco53kI	GAGCTC	1 cut(s)	23
Eco57I	CTGAAG	1 cut(s)	443
EcoICRI	GAGCTC	1 cut(s)	23
EcoRII	CCWGG	1 cut(s)	589
EcoT14I	CCWWGG	1 cut(s)	648
EcoT22I	ATGCAT	1 cut(s)	193
EcoT38I	GRGCYC	1 cut(s)	25
ErhI	CCWWGG	1 cut(s)	648
FaeI	CATG	4 cut(s)	274, 491, 739, 826
FatI	CATG	4 cut(s)	270, 487, 735, 822
FauI	CCCGC	1 cut(s)	821
Fnu4HI	GCNGC	2 cut(s)	285, 392
FokI	GGATG	4 cut(s)	164, 200, 289, 773
FriOI	GRGCYC	1 cut(s)	25
Fsp4HI	GCNGC	2 cut(s)	285, 392
FspBI	CTAG	1 cut(s)	26
GlaI	GCGC	1 cut(s)	51
GluI	GCNGC	2 cut(s)	285, 392
GsuI	CTGGAG	1 cut(s)	476
HaeIII	GGCC	1 cut(s)	380
HhaI	GCGC	1 cut(s)	52
Hin1II	CATG	4 cut(s)	274, 491, 739, 826
Hin6I	GCGC	1 cut(s)	50
HinP1I	GCGC	1 cut(s)	50
HindIII	AAGCTT	2 cut(s)	99, 198
HinfI	GANTC	3 cut(s)	267, 458, 463
HphI	GGTGA	4 cut(s)	512, 517, 713, 802
Hpy188I	TCNGA	3 cut(s)	142, 262, 415
Hpy188III	TCNNGA	3 cut(s)	115, 440, 665
HpyAV	CCTTC	3 cut(s)	230, 437, 751
HpyCH4III	ACNGT	1 cut(s)	406
HpyCH4V	TGCA	5 cut(s)	176, 191, 487, 533, 616
HpyF10VI	GCNNNNNNNGC	4 cut(s)	98, 117, 197, 427
HpyF3I	CTNAG	3 cut(s)	139, 387, 792
Hsp92II	CATG	4 cut(s)	274, 491, 739, 826
HspAI	GCGC	1 cut(s)	50
KpnI	GGTACC	2 cut(s)	327, 648
KspI	CCGCGG	1 cut(s)	755
Kzo9I	GATC	1 cut(s)	661
LmnI	GCTCC	1 cut(s)	136
Lsp1109I	GCAGC	2 cut(s)	271, 378
LweI	GCATC	2 cut(s)	178, 419
MaeI	CTAG	1 cut(s)	26
MaeIII	GTNAC	3 cut(s)	292, 783, 808
MalI	GATC	1 cut(s)	663
MboI	GATC	1 cut(s)	661
MboII	GAAGA	1 cut(s)	245
MhlI	GDGCHC	1 cut(s)	25
MluCI	AATT	3 cut(s)	301, 416, 863
MlyI	GAGTC	2 cut(s)	467, 472
MnlI	CCTC	9 cut(s)	131, 142, 144, 148, 370, 496, 729, 739, 850
Mph1103I	ATGCAT	1 cut(s)	193
MseI	TTAA	2 cut(s)	513, 843
MslI	CAYNNNNRTG	1 cut(s)	275
MspA1I	CMGCKG	1 cut(s)	754
MspR9I	CCNGG	1 cut(s)	591
MvaI	CCWGG	1 cut(s)	591
MvnI	CGCG	2 cut(s)	52, 754
MwoI	GCNNNNNNNGC	4 cut(s)	98, 117, 197, 427
NdeII	GATC	1 cut(s)	661
NlaIII	CATG	4 cut(s)	274, 491, 739, 826
NlaIV	GGNNCC	4 cut(s)	325, 646, 750, 770
NmeAIII	GCCGAG	1 cut(s)	44
NmuCI	GTSAC	1 cut(s)	808
NsiI	ATGCAT	1 cut(s)	193
NspI	RCATGY	1 cut(s)	491
PfeI	GAWTC	1 cut(s)	267
PflMI	CCANNNNNTGG	2 cut(s)	88, 356
PkrI	GCNGC	2 cut(s)	286, 393
PleI	GAGTC	2 cut(s)	466, 471
PpsI	GAGTC	2 cut(s)	466, 471
Psp124BI	GAGCTC	1 cut(s)	25
Psp6I	CCWGG	1 cut(s)	589
PspGI	CCWGG	1 cut(s)	589
PspN4I	GGNNCC	4 cut(s)	325, 646, 750, 770
PspPI	GGNCC	1 cut(s)	379
RsaI	GTAC	6 cut(s)	35, 180, 223, 325, 646, 861
RsaNI	GTAC	6 cut(s)	34, 179, 222, 324, 645, 860
RseI	CAYNNNNRTG	1 cut(s)	275
SacI	GAGCTC	1 cut(s)	25
SacII	CCGCGG	1 cut(s)	755
SaqAI	TTAA	2 cut(s)	513, 843
SatI	GCNGC	2 cut(s)	285, 392
Sau3AI	GATC	1 cut(s)	661
Sau96I	GGNCC	1 cut(s)	379
ScaI	AGTACT	1 cut(s)	180
SchI	GAGTC	2 cut(s)	467, 472
ScrFI	CCNGG	1 cut(s)	591
SduI	GDGCHC	1 cut(s)	25
SfaNI	GCATC	2 cut(s)	178, 419
SfcI	CTRYAG	1 cut(s)	288
Sfr303I	CCGCGG	1 cut(s)	755
SgrBI	CCGCGG	1 cut(s)	755
SmiMI	CAYNNNNRTG	1 cut(s)	275
SmlI	CTYRAG	1 cut(s)	115
SmoI	CTYRAG	1 cut(s)	115
Sse9I	AATT	3 cut(s)	301, 416, 863
SsiI	CCGC	3 cut(s)	752, 754, 814
SspMI	CTAG	1 cut(s)	26
SstI	GAGCTC	1 cut(s)	25
StyD4I	CCNGG	1 cut(s)	589
StyI	CCWWGG	1 cut(s)	648
TaaI	ACNGT	1 cut(s)	406
TaqI	TCGA	1 cut(s)	461
TasI	AATT	3 cut(s)	301, 416, 863
TatI	WGTACW	1 cut(s)	178
TfiI	GAWTC	1 cut(s)	267
Tru1I	TTAA	2 cut(s)	513, 843
Tru9I	TTAA	2 cut(s)	513, 843
TscAI	CASTG	3 cut(s)	379, 459, 800
TseFI	GTSAC	1 cut(s)	808
TseI	GCWGC	2 cut(s)	284, 391
Tsp45I	GTSAC	1 cut(s)	808
TspDTI	ATGAA	4 cut(s)	259, 293, 590, 752
TspGWI	ACGGA	2 cut(s)	51, 599
TspRI	CASTG	3 cut(s)	379, 459, 800
Van91I	CCANNNNNTGG	2 cut(s)	88, 356
XceI	RCATGY	1 cut(s)	491
XspI	CTAG	1 cut(s)	26
ZrmI	AGTACT	1 cut(s)	180
Zsp2I	ATGCAT	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.