Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008752

Physical Location & Seq

Genomic Coordinates Reverse (-)

11243128 .. 11246058

Gene Structure 2931 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G26430.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGATTTACACTGCTATCGACAATTTTTACCTATCCGACGAGCAGCTGAAGGCTTCACCTTCGAGGAAAGATGGGATAGATGAAACAACTGAAATCTCTCTTAGAATCTATGGATGTGATCTCATCCAAGAGGGTGGAATATTGCTCAAACTACCACAGGCAGTTATGGCTACTGGGCAGGTTCTGTTTCAGCGATTCTATTGCAAGAAGTCTTTGGCTAAATTTGATGTCAAGATAGTTGCTGCCAGCTGTGTATGGCTTGCATCAAAACTGGAAGAAAACCCTAAAAAAGCTAGACAGGTCATCATCGTATTCCACAGGATGGAGTGTCGCAGGGAGAACTTGCCATTAGAACATCTGGATATGTATGCCAAGAAGTTCTCTGAGTTGAAAGTTGAATTAAGCAGAACTGAGAGACATATACTGAAAGAGATGGGTTTTGTTTGTCATGTTGAACATCCTCACAAGTTCATATCAAACTACCTTGCCACATTAGAAACACCTCCAGAATTGAGGCAAGAAGCTTGGAATTTGGCCAATGATAGTCTGCGTACAACCCTCTGTGTAAGGTTCAGAAGTGAGGTTGTGGCTTGTGGGGTAGTGTATGCTGCTGCCCGTAGGTTTCAAGTACCACTCCCTGAGAATCCGCCGTGGTGGAAAGCATTTGATGCAGATAAATCTAGTATTGACGAAGTGTGTAGAGTTCTTGCTCATTTATACAGTCTTCCAAAGGCTCAGTATATCTCTGTTTGCAAGGATGGGAAGCCATTTACATTTTCTAGCAGATCCGGGAATTCTCAAGGTCAATCAGCGACAAAGGATCTGTTGCCGGGAGCAGGCGAGGCTGTTGATACTAAATGTACTGCAGGATCAGCTAATAACGACTTGAAGGATGGAATGGTTACTACACCACACGAAAAGGCTACAGATTCCAAGAAAAGTGGTACCGAGTCAAACTCTCAGCCAATTGTAGGAGACTCAAGCTATGAAAGAAGTAAAGTAGGAGATAGAGAAAGAGAGAGTGATAGAGAGAAGGAACGAGGTAGAGAGAGGGACAGGGGTAGGTCTCACAGAGGCAGAGATTCTGACAGAGACAGTGATAGGGAGAGAGACAAACTCAAAGATCGAAGTCATCATCGGTCAAGAGACAGATTGAAGGATTCAGGTGGACATTCAGATAAATCAAGGCATCATTCTTCTCGGGACCGTGACTACCGCGACTCATCGAAAGACCGTCGTAGGCACCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005911 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0008150 GO:0009506 GO:0009628 GO:0009651 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030054 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0055044 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_N

Protein Analysis

416

Amino Acids

47.55

Weight (kDa)

9.07

Isoelectric Point (pI)

49.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	5 - 92	5.2e-07	Cyclin, N-terminal domain
CycT2-like_C	PF21797	98 - 170	1.1e-07	Cyclin-T2-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008752)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26430 AT2G26430 AT2G26430 AT2G26430
fragaria_vesca	FvH4_6g04870 FvH4_6g04870
malus_domestica	MD04G1213300.v1.1 MD12G1227500.v1.1
prunus_persica	Prupe.6G333200_v2.0.a1 Prupe.6G333200_v2.0.a1 Prupe.7G087700_v2.0.a1
pyrus_communis	pycom04g18890 pycom12g21230
rosa_chinensis	RchiOBHm_Chr3g0453411
rosa_laevigata	RLG00000025517
rosa_multiflora	Rmu_sc0010297.1_g000002
rosa_roxburghii	Rroxscaffold_6G00430380
rosa_rugosa	Rorug02G0648700
rosa_samantha	Rh3AG051600 Rh3BG053000 Rh3CG052300 Rh3DG053100
rosa_wichuraiana	Rw3G003960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	169
Acc65I	GGTACC	1 cut(s)	944
AccB1I	GGYRCC	2 cut(s)	944, 1242
AccB7I	CCANNNNNTGG	1 cut(s)	322
AccII	CGCG	1 cut(s)	1218
AciI	CCGC	2 cut(s)	647, 1216
AclWI	GGATC	3 cut(s)	780, 828, 877
AcoI	YGGCCR	1 cut(s)	534
AcsI	RAATTY	3 cut(s)	221, 529, 793
AcuI	CTGAAG	1 cut(s)	68
AfaI	GTAC	4 cut(s)	553, 630, 862, 946
AfiI	CCNNNNNNNGG	3 cut(s)	322, 836, 971
AgsI	TTSAA	6 cut(s)	391, 398, 455, 626, 889, 1156
AluBI	AGCT	6 cut(s)	46, 249, 293, 524, 875, 984
AluI	AGCT	6 cut(s)	46, 249, 293, 524, 875, 984
Alw26I	GTCTC	6 cut(s)	409, 969, 1071, 1086, 1104, 1140
AlwI	GGATC	3 cut(s)	780, 828, 877
AlwNI	CAGNNNCTG	1 cut(s)	184
Ama87I	CYCGRG	1 cut(s)	1200
AoxI	GGCC	1 cut(s)	534
ApeKI	GCWGC	4 cut(s)	43, 242, 608, 611
ApoI	RAATTY	3 cut(s)	221, 529, 793
Asp718I	GGTACC	1 cut(s)	944
AspS9I	GGNCC	1 cut(s)	1204
AsuC2I	CCSGG	2 cut(s)	790, 831
AsuHPI	GGTGA	1 cut(s)	48
AvaI	CYCGRG	1 cut(s)	1200
AvaII	GGWCC	1 cut(s)	1204
BalI	TGGCCA	1 cut(s)	536
BanI	GGYRCC	2 cut(s)	944, 1242
BbsI	GAAGAC	1 cut(s)	716
BbvI	GCAGC	4 cut(s)	55, 229, 595, 598
BccI	CCATC	5 cut(s)	65, 316, 427, 752, 887
BceAI	ACGGC	1 cut(s)	634
BcgI	CGANNNNNNTGC	2 cut(s)	183, 217
BcnI	CCSGG	2 cut(s)	790, 831
BcoDI	GTCTC	6 cut(s)	409, 969, 1071, 1086, 1104, 1140
BfaI	CTAG	3 cut(s)	294, 681, 780
BfmI	CTRYAG	2 cut(s)	864, 924
BfuAI	ACCTGC	1 cut(s)	169
BisI	GCNGC	4 cut(s)	44, 243, 609, 612
BlsI	GCNGC	4 cut(s)	45, 244, 610, 613
Bme1390I	CCNGG	2 cut(s)	790, 831
Bme18I	GGWCC	1 cut(s)	1204
BmeT110I	CYCGRG	1 cut(s)	1200
BmgT120I	GGNCC	1 cut(s)	1204
BmiI	GGNNCC	3 cut(s)	946, 1205, 1244
BmrFI	CCNGG	2 cut(s)	790, 831
BmrI	ACTGGG	1 cut(s)	183
BmsI	GCATC	3 cut(s)	272, 658, 1198
BmuI	ACTGGG	1 cut(s)	183
BpiI	GAAGAC	1 cut(s)	716
BplI	GAGNNNNNCTC	4 cut(s)	941, 973, 1101, 1133
BpmI	CTGGAG	1 cut(s)	489
BpuEI	CTTGAG	2 cut(s)	783, 964
BpuMI	CCSGG	2 cut(s)	790, 831
BsaI	GGTCTC	1 cut(s)	1071
BsaJI	CCNNGG	1 cut(s)	650
Bsc4I	CCNNNNNNNGG	3 cut(s)	322, 836, 971
Bse1I	ACTGG	2 cut(s)	178, 276
BseDI	CCNNGG	1 cut(s)	650
BseGI	GGATG	6 cut(s)	119, 123, 327, 457, 763, 898
BseLI	CCNNNNNNNGG	3 cut(s)	322, 836, 971
BseMII	CTCAG	5 cut(s)	375, 402, 630, 749, 974
BseNI	ACTGG	2 cut(s)	178, 276
BseXI	GCAGC	4 cut(s)	55, 229, 595, 598
Bsh1236I	CGCG	1 cut(s)	1218
BshFI	GGCC	1 cut(s)	536
BshNI	GGYRCC	2 cut(s)	944, 1242
BsiHKCI	CYCGRG	1 cut(s)	1200
BsiSI	CCGG	2 cut(s)	789, 830
BslFI	GGGAC	2 cut(s)	1067, 1217
BslI	CCNNNNNNNGG	3 cut(s)	322, 836, 971
BsmAI	GTCTC	6 cut(s)	409, 969, 1071, 1086, 1104, 1140
BsmFI	GGGAC	2 cut(s)	1067, 1217
BsnI	GGCC	1 cut(s)	536
Bso31I	GGTCTC	1 cut(s)	1071
BsoBI	CYCGRG	1 cut(s)	1200
Bsp143I	GATC	5 cut(s)	118, 785, 820, 869, 1123
BspACI	CCGC	2 cut(s)	647, 1216
BspANI	GGCC	1 cut(s)	536
BspCNI	CTCAG	5 cut(s)	376, 403, 631, 748, 973
BspFNI	CGCG	1 cut(s)	1218
BspLI	GGNNCC	3 cut(s)	946, 1205, 1244
BspMAI	CTGCAG	1 cut(s)	868
BspMI	ACCTGC	1 cut(s)	169
BspPI	GGATC	3 cut(s)	780, 828, 877
BspT107I	GGYRCC	2 cut(s)	944, 1242
BspTNI	GGTCTC	1 cut(s)	1071
BsrI	ACTGG	2 cut(s)	178, 276
BssECI	CCNNGG	1 cut(s)	650
BssMI	GATC	5 cut(s)	118, 785, 820, 869, 1123
Bst4CI	ACNGT	4 cut(s)	722, 1097, 1208, 1235
BstAPI	GCANNNNNTGC	1 cut(s)	668
BstC8I	GCNNGC	3 cut(s)	247, 261, 838
BstDEI	CTNAG	6 cut(s)	101, 384, 411, 639, 735, 960
BstDSI	CCRYGG	1 cut(s)	650
BstF5I	GGATG	6 cut(s)	119, 123, 327, 457, 763, 898
BstFNI	CGCG	1 cut(s)	1218
BstKTI	GATC	5 cut(s)	121, 788, 823, 872, 1126
BstMAI	GTCTC	6 cut(s)	409, 969, 1071, 1086, 1104, 1140
BstMBI	GATC	5 cut(s)	118, 785, 820, 869, 1123
BstMWI	GCNNNNNNNGC	4 cut(s)	167, 668, 842, 872
BstSCI	CCNGG	2 cut(s)	788, 829
BstSFI	CTRYAG	2 cut(s)	864, 924
BstUI	CGCG	1 cut(s)	1218
BstV1I	GCAGC	4 cut(s)	55, 229, 595, 598
BstV2I	GAAGAC	1 cut(s)	716
BstX2I	RGATCY	2 cut(s)	785, 820
BstXI	CCANNNNNNTGG	1 cut(s)	134
BstYI	RGATCY	2 cut(s)	785, 820
BsuRI	GGCC	1 cut(s)	536
BtgI	CCRYGG	1 cut(s)	650
BtsCI	GGATG	6 cut(s)	119, 123, 327, 457, 763, 898
BtsI	GCAGTG	1 cut(s)	9
BtsIMutI	CAGTG	2 cut(s)	9, 1102
BveI	ACCTGC	1 cut(s)	169
Cac8I	GCNNGC	3 cut(s)	247, 261, 838
CaiI	CAGNNNCTG	1 cut(s)	184
Cfr13I	GGNCC	1 cut(s)	1204
Csp6I	GTAC	4 cut(s)	552, 629, 861, 945
CspCI	CAANNNNNGTGG	2 cut(s)	922, 957
CviAII	CATG	1 cut(s)	449
CviQI	GTAC	4 cut(s)	552, 629, 861, 945
DdeI	CTNAG	6 cut(s)	101, 384, 411, 639, 735, 960
DpnI	GATC	5 cut(s)	120, 787, 822, 871, 1125
DpnII	GATC	5 cut(s)	118, 785, 820, 869, 1123
EaeI	YGGCCR	1 cut(s)	534
EciI	GGCGGA	1 cut(s)	636
Eco31I	GGTCTC	1 cut(s)	1071
Eco47I	GGWCC	1 cut(s)	1204
Eco57I	CTGAAG	1 cut(s)	68
Eco88I	CYCGRG	1 cut(s)	1200
EcoRI	GAATTC	1 cut(s)	793
FaeI	CATG	1 cut(s)	452
FaqI	GGGAC	2 cut(s)	1067, 1217
FatI	CATG	1 cut(s)	448
Fnu4HI	GCNGC	4 cut(s)	44, 243, 609, 612
FokI	GGATG	6 cut(s)	110, 126, 334, 444, 770, 905
Fsp4HI	GCNGC	4 cut(s)	44, 243, 609, 612
FspBI	CTAG	3 cut(s)	294, 681, 780
GluI	GCNGC	4 cut(s)	44, 243, 609, 612
GsuI	CTGGAG	1 cut(s)	489
HaeIII	GGCC	1 cut(s)	536
HapII	CCGG	2 cut(s)	789, 830
Hin1II	CATG	1 cut(s)	452
HindIII	AAGCTT	1 cut(s)	522
HinfI	GANTC	9 cut(s)	105, 195, 643, 929, 950, 977, 1082, 1160, 1220
HpaII	CCGG	2 cut(s)	789, 830
HphI	GGTGA	1 cut(s)	48
Hpy166II	GTNNAC	1 cut(s)	1169
Hpy188I	TCNGA	5 cut(s)	37, 385, 575, 1087, 1177
Hpy188III	TCNNGA	5 cut(s)	232, 359, 506, 1143, 1202
Hpy8I	GTNNAC	1 cut(s)	1169
Hpy99I	CGWCG	2 cut(s)	41, 1239
HpyAV	CCTTC	5 cut(s)	43, 69, 883, 1027, 1150
HpyCH4III	ACNGT	4 cut(s)	722, 1097, 1208, 1235
HpyCH4V	TGCA	5 cut(s)	204, 263, 671, 753, 866
HpyF10VI	GCNNNNNNNGC	4 cut(s)	167, 668, 842, 872
HpyF3I	CTNAG	6 cut(s)	101, 384, 411, 639, 735, 960
Hsp92II	CATG	1 cut(s)	452
KpnI	GGTACC	1 cut(s)	948
Kzo9I	GATC	5 cut(s)	118, 785, 820, 869, 1123
LmnI	GCTCC	1 cut(s)	833
Lsp1109I	GCAGC	4 cut(s)	55, 229, 595, 598
LweI	GCATC	3 cut(s)	272, 658, 1198
MaeI	CTAG	3 cut(s)	294, 681, 780
MaeIII	GTNAC	2 cut(s)	901, 1208
MalI	GATC	5 cut(s)	120, 787, 822, 871, 1125
MboI	GATC	5 cut(s)	118, 785, 820, 869, 1123
MboII	GAAGA	3 cut(s)	287, 716, 1188
MfeI	CAATTG	1 cut(s)	966
MflI	RGATCY	2 cut(s)	785, 820
MlsI	TGGCCA	1 cut(s)	536
MluCI	AATT	7 cut(s)	22, 221, 398, 509, 529, 793, 966
MluNI	TGGCCA	1 cut(s)	536
MlyI	GAGTC	3 cut(s)	959, 971, 1214
MmeI	TCCRAC	1 cut(s)	60
Mox20I	TGGCCA	1 cut(s)	536
MscI	TGGCCA	1 cut(s)	536
MseI	TTAA	2 cut(s)	401, 1249
Msp20I	TGGCCA	1 cut(s)	536
MspA1I	CMGCKG	2 cut(s)	46, 249
MspI	CCGG	2 cut(s)	789, 830
MspR9I	CCNGG	2 cut(s)	790, 831
MunI	CAATTG	1 cut(s)	966
MvnI	CGCG	1 cut(s)	1218
MwoI	GCNNNNNNNGC	4 cut(s)	167, 668, 842, 872
NciI	CCSGG	2 cut(s)	790, 831
NdeII	GATC	5 cut(s)	118, 785, 820, 869, 1123
NlaIII	CATG	1 cut(s)	452
NlaIV	GGNNCC	3 cut(s)	946, 1205, 1244
NmuCI	GTSAC	1 cut(s)	1208
PfeI	GAWTC	6 cut(s)	105, 195, 643, 929, 1082, 1160
PflMI	CCANNNNNTGG	1 cut(s)	322
PfoI	TCCNGGA	1 cut(s)	788
PkrI	GCNGC	4 cut(s)	45, 244, 610, 613
PleI	GAGTC	3 cut(s)	958, 971, 1214
PpsI	GAGTC	3 cut(s)	958, 971, 1214
PspN4I	GGNNCC	3 cut(s)	946, 1205, 1244
PspPI	GGNCC	1 cut(s)	1204
PstI	CTGCAG	1 cut(s)	868
PstNI	CAGNNNCTG	1 cut(s)	184
PsuI	RGATCY	2 cut(s)	785, 820
PvuII	CAGCTG	2 cut(s)	46, 249
RsaI	GTAC	4 cut(s)	553, 630, 862, 946
RsaNI	GTAC	4 cut(s)	552, 629, 861, 945
SaqAI	TTAA	2 cut(s)	401, 1249
SatI	GCNGC	4 cut(s)	44, 243, 609, 612
Sau3AI	GATC	5 cut(s)	118, 785, 820, 869, 1123
Sau96I	GGNCC	1 cut(s)	1204
SchI	GAGTC	3 cut(s)	959, 971, 1214
ScrFI	CCNGG	2 cut(s)	790, 831
SfaNI	GCATC	3 cut(s)	272, 658, 1198
SfcI	CTRYAG	2 cut(s)	864, 924
SinI	GGWCC	1 cut(s)	1204
SmlI	CTYRAG	2 cut(s)	798, 979
SmoI	CTYRAG	2 cut(s)	798, 979
Sse9I	AATT	7 cut(s)	22, 221, 398, 509, 529, 793, 966
SsiI	CCGC	2 cut(s)	647, 1216
SspI	AATATT	1 cut(s)	141
SspMI	CTAG	3 cut(s)	294, 681, 780
StyD4I	CCNGG	2 cut(s)	788, 829
TaaI	ACNGT	4 cut(s)	722, 1097, 1208, 1235
TaqI	TCGA	4 cut(s)	18, 62, 1126, 1226
TaqII	GACCGA	1 cut(s)	1128
TasI	AATT	7 cut(s)	22, 221, 398, 509, 529, 793, 966
TatI	WGTACW	1 cut(s)	860
TfiI	GAWTC	6 cut(s)	105, 195, 643, 929, 1082, 1160
Tru1I	TTAA	2 cut(s)	401, 1249
Tru9I	TTAA	2 cut(s)	401, 1249
TscAI	CASTG	2 cut(s)	16, 1102
TseFI	GTSAC	1 cut(s)	1208
TseI	GCWGC	4 cut(s)	43, 242, 608, 611
Tsp45I	GTSAC	1 cut(s)	1208
TspDTI	ATGAA	3 cut(s)	96, 460, 1002
TspRI	CASTG	2 cut(s)	16, 1102
Van91I	CCANNNNNTGG	1 cut(s)	322
VpaK11BI	GGWCC	1 cut(s)	1204
XapI	RAATTY	3 cut(s)	221, 529, 793
XspI	CTAG	3 cut(s)	294, 681, 780

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.