Rh3BG053000

Belongs to the cyclin family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
Physical Location & Seq
Reverse (-)
3630348 .. 3633762
3415 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG053000.1

Sequence Viewer

Length: 1452 bp
ATGTACACCTTGGGCTTTTTACTTCGTTCTAAATTCAGATCCGACCCGGAAGACATAAAAGAAGCTCTTCAAACAAAACGAAGAGACTATCTGAAAACTTCTGCACTGGCTCTCTCTGGATTCAAAGAAGGAGGAGGGTTTCCACCGATGATTTACACGGCGATAGACACGTTCTATCTGAGCGATGAGGACCTGGAGAACTCGCCGTCGAGAAGGGACGGCATAGATGAAGCCACAGAGACCACGCTCAGAATCTACGGCTGTGATTTGATTCAAGAGAGCGGCATTCTGCTCAGAATGCCTCAGGCTGTGATGGCCACCGGTCAGGTTCTGTTTCACCGTTTCTATTGCAAGAAATCGTTTGCACGCTTCAATGTCAAGAAAGTCGCTGCTAGTTGTCTGTGGCTTGCATCAAAGCTGGAGGAATGTCCTAAGAAAGCTAGACAGGTGATTATTGTTTTCCACAGAATGGAATGTAGGAGGGAGAACTTACCAATTGAGCATTTGGATCCACAATCAAAGAAATATACAGACTTGAAGATGGAGTTGAGTAGAACAGAGAGACATATTTTGAAAGAGATGGGTTTCATCTGCCATGTTGAACATCCCCACAAGTTCATTTCGAATTACCTTGCCACTCTTGAATCACCTCCAGAATTAACGCAAGAAGCCTGGAATTTAGCAAATGACAGTTTGCGTACAACTTTGTGTGTTCGATTCAAGAGTGAGGTTGTTGCTTGTGGTGTTGTGTATGCTGCTGCTCGGAGGTTTCGTGTCCCCCTTCCTGAGAATCCCCCATGGTGGAAGGCATTTGATGCTGACAAATCAGGGATTGATGAAGTTTGTAGGGTTCTGGCTCATCTGTATAGTCTTCCTAAAGCTCAGTATATTCCAGTCTGTAAGGATGGAGATTCATTTACATTTTCTAGCAACAAATGGAATTCGCAGTCCCAGCCAGTTTCAAAGGAAGTTCCTAAGAGTAGCCCACCAACTATTGCTGATACATCTAATTCAAATGTACCTACAGCAGCAGTCAATCCTGAATCTTCTAGATCAAAGGGTGTAAGCAAAACAGCCATCGATAAGGTAAAGGATTCTAAAGAAAGTGATGATGAATCTAAGAGCATGCCTGTTGATGTAGAGGGAAGAGAAGATTTGAATATGAAATCCAAGACTGAACGCAGCAAAAGCAGGGACAGGGAGAGGGATAGGGAGAGGGAGAGAGAGAGGGACAGGGATAGAATAAAGGTCCGAGATCGTGATCGGGGAGATCGAGAGGAAGCTGAGAGGGATAGAACCAAGGACCGAGGTCATCGTTCTAAGGACAGAGCAAAAGATTCAGGGGGGCATTCAGAGAAATCAAGACATTACTCATCACGAGATCGTGACTATCACAGTTCCTCTTATTCTTCGAGGGAGAAGGATCGCTATAGACACCACCCCTATGCCTGA

Protein Analysis

483

Amino Acids

55.71

Weight (kDa)

9.05

Isoelectric Point (pI)

60.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 64 - 196 3.6e-11 Cyclin, N-terminal domain
CycT2-like_C PF21797 202 - 274 5e-08 Cyclin-T2-like, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 469
AccBSI CCGCTC 1 cut(s) 282
AciI CCGC 1 cut(s) 282
AclWI GGATC 4 cut(s) 33, 503, 516, 1431
AcoI YGGCCR 1 cut(s) 315
AcsI RAATTY 3 cut(s) 32, 676, 940
AfaI GTAC 3 cut(s) 5, 700, 1020
AfiI CCNNNNNNNGG 2 cut(s) 469, 801
AflIII ACRYGT 1 cut(s) 168
AgeI ACCGGT 1 cut(s) 320
AjnI CCWGG 2 cut(s) 192, 671
AluBI AGCT 5 cut(s) 65, 418, 440, 881, 1283
AluI AGCT 5 cut(s) 65, 418, 440, 881, 1283
Alw26I GTCTC 3 cut(s) 78, 233, 556
AlwI GGATC 4 cut(s) 33, 503, 516, 1431
AlwNI CAGNNNCTG 1 cut(s) 331
AoxI GGCC 1 cut(s) 315
ApeKI GCWGC 5 cut(s) 389, 755, 758, 1028, 1182
ApoI RAATTY 3 cut(s) 32, 676, 940
AsiGI ACCGGT 1 cut(s) 320
Asp700I GAANNNNTTC 1 cut(s) 66
AspS9I GGNCC 3 cut(s) 190, 1249, 1303
AsuC2I CCSGG 1 cut(s) 47
AsuHPI GGTGA 3 cut(s) 329, 460, 639
AsuII TTCGAA 1 cut(s) 623
AvaII GGWCC 3 cut(s) 190, 1249, 1303
AxyI CCTNAGG 1 cut(s) 303
BalI TGGCCA 1 cut(s) 317
BamHI GGATCC 1 cut(s) 508
BauI CACGAG 1 cut(s) 1377
BbsI GAAGAC 2 cut(s) 57, 863
BbvI GCAGC 5 cut(s) 376, 742, 745, 1040, 1194
BccI CCATC 5 cut(s) 307, 535, 574, 899, 1085
BceAI ACGGC 4 cut(s) 174, 190, 235, 274
BciT130I CCWGG 2 cut(s) 194, 673
BcnI CCSGG 1 cut(s) 47
BcoDI GTCTC 3 cut(s) 78, 233, 556
BfaI CTAG 4 cut(s) 393, 441, 927, 1050
BfmI CTRYAG 2 cut(s) 1023, 1429
BisI GCNGC 6 cut(s) 283, 390, 756, 759, 1029, 1183
BlsI GCNGC 6 cut(s) 284, 391, 757, 760, 1030, 1184
Bme1390I CCNGG 3 cut(s) 47, 194, 673
Bme18I GGWCC 3 cut(s) 190, 1249, 1303
BmgT120I GGNCC 3 cut(s) 190, 1249, 1303
BmiI GGNNCC 1 cut(s) 510
BmrFI CCNGG 3 cut(s) 47, 194, 673
BmsI GCATC 2 cut(s) 419, 805
BoxI GACNNNNGTC 1 cut(s) 1308
BpiI GAAGAC 2 cut(s) 57, 863
BpmI CTGGAG 3 cut(s) 215, 440, 636
Bpu14I TTCGAA 1 cut(s) 623
BpuMI CCSGG 1 cut(s) 47
Bsa29I ATCGAT 1 cut(s) 1080
BsaBI GATNNNNATC 1 cut(s) 1260
BsaI GGTCTC 1 cut(s) 233
BsaJI CCNNGG 4 cut(s) 9, 797, 1299, 1306
BsaWI WCCGGW 1 cut(s) 320
BsaXI ACNNNNNCTCC 2 cut(s) 757, 787
Bsc4I CCNNNNNNNGG 2 cut(s) 469, 801
Bse118I RCCGGY 1 cut(s) 320
Bse1I ACTGG 3 cut(s) 111, 893, 956
Bse21I CCTNAGG 1 cut(s) 303
Bse8I GATNNNNATC 1 cut(s) 1260
BseBI CCWGG 2 cut(s) 194, 673
BseCI ATCGAT 1 cut(s) 1080
BseDI CCNNGG 4 cut(s) 9, 797, 1299, 1306
BseGI GGATG 2 cut(s) 604, 910
BseJI GATNNNNATC 1 cut(s) 1260
BseLI CCNNNNNNNGG 2 cut(s) 469, 801
BseMII CTCAG 7 cut(s) 170, 262, 307, 317, 777, 896, 1275
BseNI ACTGG 3 cut(s) 111, 893, 956
BseRI GAGGAG 1 cut(s) 147
BseXI GCAGC 5 cut(s) 376, 742, 745, 1040, 1194
BseYI CCCAGC 1 cut(s) 951
BsgI GTGCAG 1 cut(s) 87
BshFI GGCC 1 cut(s) 317
BshTI ACCGGT 1 cut(s) 320
BshVI ATCGAT 1 cut(s) 1080
BsiSI CCGG 2 cut(s) 47, 321
BslFI GGGAC 5 cut(s) 230, 761, 934, 1208, 1244
BslI CCNNNNNNNGG 2 cut(s) 469, 801
BsmAI GTCTC 3 cut(s) 78, 233, 556
BsmFI GGGAC 5 cut(s) 230, 761, 934, 1208, 1244
BsmI GAATGC 3 cut(s) 285, 303, 1348
BsnI GGCC 1 cut(s) 317
Bso31I GGTCTC 1 cut(s) 233
Bsp119I TTCGAA 1 cut(s) 623
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 8 cut(s) 38, 508, 1052, 1255, 1261, 1270, 1381, 1423
Bsp19I CCATGG 1 cut(s) 797
BspACI CCGC 1 cut(s) 282
BspANI GGCC 1 cut(s) 317
BspCNI CTCAG 7 cut(s) 171, 261, 306, 316, 778, 895, 1276
BspDI ATCGAT 1 cut(s) 1080
BspLI GGNNCC 1 cut(s) 510
BspPI GGATC 4 cut(s) 33, 503, 516, 1431
BspQI GCTCTTC 1 cut(s) 72
BspT104I TTCGAA 1 cut(s) 623
BspTNI GGTCTC 1 cut(s) 233
BsrBI CCGCTC 1 cut(s) 282
BsrFI RCCGGY 1 cut(s) 320
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 3 cut(s) 111, 893, 956
BssAI RCCGGY 1 cut(s) 320
BssECI CCNNGG 4 cut(s) 9, 797, 1299, 1306
BssMI GATC 8 cut(s) 38, 508, 1052, 1255, 1261, 1270, 1381, 1423
BssSI CACGAG 1 cut(s) 1377
BssT1I CCWWGG 3 cut(s) 9, 797, 1299
Bst2BI CACGAG 1 cut(s) 1377
Bst2UI CCWGG 2 cut(s) 194, 673
Bst4CI ACNGT 3 cut(s) 341, 692, 1397
Bst6I CTCTTC 3 cut(s) 72, 76, 1141
BstAPI GCANNNNNTGC 1 cut(s) 815
BstAUI TGTACA 1 cut(s) 3
BstBI TTCGAA 1 cut(s) 623
BstC8I GCNNGC 3 cut(s) 367, 408, 1127
BstDSI CCRYGG 1 cut(s) 797
BstF5I GGATG 2 cut(s) 604, 910
BstKTI GATC 8 cut(s) 41, 511, 1055, 1258, 1264, 1273, 1384, 1426
BstMAI GTCTC 3 cut(s) 78, 233, 556
BstMBI GATC 8 cut(s) 38, 508, 1052, 1255, 1261, 1270, 1381, 1423
BstMWI GCNNNNNNNGC 5 cut(s) 298, 314, 815, 952, 1188
BstNI CCWGG 2 cut(s) 194, 673
BstNSI RCATGY 1 cut(s) 1129
BstPAI GACNNNNGTC 1 cut(s) 1308
BstSCI CCNGG 3 cut(s) 45, 192, 671
BstSFI CTRYAG 2 cut(s) 1023, 1429
BstV1I GCAGC 5 cut(s) 376, 742, 745, 1040, 1194
BstV2I GAAGAC 2 cut(s) 57, 863
BstX2I RGATCY 2 cut(s) 38, 508
BstYI RGATCY 2 cut(s) 38, 508
Bsu15I ATCGAT 1 cut(s) 1080
Bsu36I CCTNAGG 1 cut(s) 303
BsuRI GGCC 1 cut(s) 317
BsuTUI ATCGAT 1 cut(s) 1080
BtgI CCRYGG 1 cut(s) 797
BtgZI GCGATG 1 cut(s) 198
BtsCI GGATG 2 cut(s) 604, 910
BtsIMutI CAGTG 1 cut(s) 104
Cac8I GCNNGC 3 cut(s) 367, 408, 1127
CaiI CAGNNNCTG 1 cut(s) 331
Cfr10I RCCGGY 1 cut(s) 320
Cfr13I GGNCC 3 cut(s) 190, 1249, 1303
ClaI ATCGAT 1 cut(s) 1080
Csp6I GTAC 3 cut(s) 4, 699, 1019
CspAI ACCGGT 1 cut(s) 320
CviAII CATG 3 cut(s) 596, 798, 1126
CviQI GTAC 3 cut(s) 4, 699, 1019
DpnI GATC 8 cut(s) 40, 510, 1054, 1257, 1263, 1272, 1383, 1425
DpnII GATC 8 cut(s) 38, 508, 1052, 1255, 1261, 1270, 1381, 1423
EaeI YGGCCR 1 cut(s) 315
Eam1104I CTCTTC 3 cut(s) 72, 76, 1141
EarI CTCTTC 3 cut(s) 72, 76, 1141
Eco130I CCWWGG 3 cut(s) 9, 797, 1299
Eco31I GGTCTC 1 cut(s) 233
Eco47I GGWCC 3 cut(s) 190, 1249, 1303
Eco81I CCTNAGG 1 cut(s) 303
EcoO109I RGGNCCY 1 cut(s) 190
EcoRI GAATTC 1 cut(s) 940
EcoRII CCWGG 2 cut(s) 192, 671
EcoT14I CCWWGG 3 cut(s) 9, 797, 1299
ErhI CCWWGG 3 cut(s) 9, 797, 1299
FaeI CATG 3 cut(s) 599, 801, 1129
FalI AAGNNNNNCTT 2 cut(s) 51, 83
FaqI GGGAC 5 cut(s) 230, 761, 934, 1208, 1244
FatI CATG 3 cut(s) 595, 797, 1125
Fnu4HI GCNGC 6 cut(s) 283, 390, 756, 759, 1029, 1183
FokI GGATG 2 cut(s) 591, 917
Fsp4HI GCNGC 6 cut(s) 283, 390, 756, 759, 1029, 1183
FspBI CTAG 4 cut(s) 393, 441, 927, 1050
GluI GCNGC 6 cut(s) 283, 390, 756, 759, 1029, 1183
GsaI CCCAGC 1 cut(s) 955
GsuI CTGGAG 3 cut(s) 215, 440, 636
HaeIII GGCC 1 cut(s) 317
HapII CCGG 2 cut(s) 47, 321
Hin1II CATG 3 cut(s) 599, 801, 1129
HpaII CCGG 2 cut(s) 47, 321
HphI GGTGA 3 cut(s) 329, 460, 639
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 9 cut(s) 38, 43, 93, 180, 251, 296, 765, 1253, 1354
Hpy8I GTNNAC 1 cut(s) 6
Hpy99I CGWCG 1 cut(s) 211
HpyAV CCTTC 5 cut(s) 122, 207, 791, 799, 1414
HpyCH4III ACNGT 3 cut(s) 341, 692, 1397
HpyCH4IV ACGT 1 cut(s) 170
HpyCH4V TGCA 4 cut(s) 104, 351, 365, 410
HpyF10VI GCNNNNNNNGC 5 cut(s) 298, 314, 815, 952, 1188
HpySE526I ACGT 1 cut(s) 170
Hsp92II CATG 3 cut(s) 599, 801, 1129
Kzo9I GATC 8 cut(s) 38, 508, 1052, 1255, 1261, 1270, 1381, 1423
LguI GCTCTTC 1 cut(s) 72
Lsp1109I GCAGC 5 cut(s) 376, 742, 745, 1040, 1194
LweI GCATC 2 cut(s) 419, 805
MaeI CTAG 4 cut(s) 393, 441, 927, 1050
MaeII ACGT 1 cut(s) 170
MaeIII GTNAC 1 cut(s) 1385
MalI GATC 8 cut(s) 40, 510, 1054, 1257, 1263, 1272, 1383, 1425
MbiI CCGCTC 1 cut(s) 282
MboI GATC 8 cut(s) 38, 508, 1052, 1255, 1261, 1270, 1381, 1423
MboII GAAGA 9 cut(s) 59, 62, 93, 550, 863, 1038, 1158, 1163, 1401
MfeI CAATTG 1 cut(s) 495
MflI RGATCY 2 cut(s) 38, 508
MlsI TGGCCA 1 cut(s) 317
MluCI AATT 7 cut(s) 32, 495, 625, 656, 676, 940, 1009
MluNI TGGCCA 1 cut(s) 317
MmeI TCCRAC 1 cut(s) 66
Mox20I TGGCCA 1 cut(s) 317
MroXI GAANNNNTTC 1 cut(s) 66
MscI TGGCCA 1 cut(s) 317
MseI TTAA 1 cut(s) 659
MslI CAYNNNNRTG 1 cut(s) 1443
Msp20I TGGCCA 1 cut(s) 317
MspI CCGG 2 cut(s) 47, 321
MspR9I CCNGG 3 cut(s) 47, 194, 673
MunI CAATTG 1 cut(s) 495
Mva1269I GAATGC 3 cut(s) 285, 303, 1348
MvaI CCWGG 2 cut(s) 194, 673
MwoI GCNNNNNNNGC 5 cut(s) 298, 314, 815, 952, 1188
NciI CCSGG 1 cut(s) 47
NcoI CCATGG 1 cut(s) 797
NdeII GATC 8 cut(s) 38, 508, 1052, 1255, 1261, 1270, 1381, 1423
NlaIII CATG 3 cut(s) 599, 801, 1129
NlaIV GGNNCC 1 cut(s) 510
NmuCI GTSAC 1 cut(s) 1385
NspI RCATGY 1 cut(s) 1129
NspV TTCGAA 1 cut(s) 623
PaeI GCATGC 1 cut(s) 1129
PciSI GCTCTTC 1 cut(s) 72
PcsI WCGNNNNNNNCGW 2 cut(s) 769, 1270
PctI GAATGC 3 cut(s) 285, 303, 1348
PdmI GAANNNNTTC 1 cut(s) 66
PflMI CCANNNNNTGG 1 cut(s) 469
PinAI ACCGGT 1 cut(s) 320
PkrI GCNGC 6 cut(s) 284, 391, 757, 760, 1030, 1184
PpuMI RGGWCCY 1 cut(s) 190
PshAI GACNNNNGTC 1 cut(s) 1308
Psp5II RGGWCCY 1 cut(s) 190
Psp6I CCWGG 2 cut(s) 192, 671
PspFI CCCAGC 1 cut(s) 951
PspGI CCWGG 2 cut(s) 192, 671
PspN4I GGNNCC 1 cut(s) 510
PspPI GGNCC 3 cut(s) 190, 1249, 1303
PspPPI RGGWCCY 1 cut(s) 190
PstNI CAGNNNCTG 1 cut(s) 331
PsuI RGATCY 2 cut(s) 38, 508
RsaI GTAC 3 cut(s) 5, 700, 1020
RsaNI GTAC 3 cut(s) 4, 699, 1019
RseI CAYNNNNRTG 1 cut(s) 1443
SapI GCTCTTC 1 cut(s) 72
SaqAI TTAA 1 cut(s) 659
SatI GCNGC 6 cut(s) 283, 390, 756, 759, 1029, 1183
Sau3AI GATC 8 cut(s) 38, 508, 1052, 1255, 1261, 1270, 1381, 1423
Sau96I GGNCC 3 cut(s) 190, 1249, 1303
ScrFI CCNGG 3 cut(s) 47, 194, 673
SfaNI GCATC 2 cut(s) 419, 805
SfcI CTRYAG 2 cut(s) 1023, 1429
SfuI TTCGAA 1 cut(s) 623
SinI GGWCC 3 cut(s) 190, 1249, 1303
SmiMI CAYNNNNRTG 1 cut(s) 1443
SphI GCATGC 1 cut(s) 1129
Sse9I AATT 7 cut(s) 32, 495, 625, 656, 676, 940, 1009
SsiI CCGC 1 cut(s) 282
SspMI CTAG 4 cut(s) 393, 441, 927, 1050
StyD4I CCNGG 3 cut(s) 45, 192, 671
StyI CCWWGG 3 cut(s) 9, 797, 1299
TaaI ACNGT 3 cut(s) 341, 692, 1397
TaiI ACGT 1 cut(s) 173
TaqI TCGA 6 cut(s) 209, 623, 715, 1080, 1273, 1412
TaqII GACCGA 1 cut(s) 1320
TasI AATT 7 cut(s) 32, 495, 625, 656, 676, 940, 1009
TatI WGTACW 1 cut(s) 3
TauI GCSGC 1 cut(s) 285
Tru1I TTAA 1 cut(s) 659
Tru9I TTAA 1 cut(s) 659
TscAI CASTG 1 cut(s) 111
TseFI GTSAC 1 cut(s) 1385
TseI GCWGC 5 cut(s) 389, 755, 758, 1028, 1182
Tsp45I GTSAC 1 cut(s) 1385
TspDTI ATGAA 7 cut(s) 243, 577, 607, 852, 903, 1128, 1178
TspRI CASTG 1 cut(s) 111
Van91I CCANNNNNTGG 1 cut(s) 469
VpaK11BI GGWCC 3 cut(s) 190, 1249, 1303
XapI RAATTY 3 cut(s) 32, 676, 940
XbaI TCTAGA 1 cut(s) 1049
XceI RCATGY 1 cut(s) 1129
XmnI GAANNNNTTC 1 cut(s) 66
XspI CTAG 4 cut(s) 393, 441, 927, 1050
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.