Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0008752

Physical Location & Seq

Genomic Coordinates Reverse (-)

2700982 .. 2704780

Gene Structure 3799 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g04870.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1329 bp

ATGATTTACACGGCGATAGACACGTTCTATCTGAGCGACGACGAGCTGGAGAACACGCCGTCGAGAAGGGACGGCATAGATGCAGCTACCGAGACCACGCTCAGAATCTACGGCTGTGATTTGATCCAGGAGAGCGGCATTTTGCTCAGAATGCCTCAGGCTGTTATGGCCACTGGTCAGGTTTTGTTTCATCGTTTCTATTGCAAGAAGTCGTTTGCACGCTTCCATGTCAAGAAAGTTGCTGCTAGTTGTCTTTGGCTTGCATCAAAGCTGGAGGAATGTCCTAAGAAAGCTAGACAGGTGATTATTGTTTTCCACAGAGTGGAATGCAGGAGGGAGAACTTACCCATTGAGCATTTGGATCCACAATCAAAGGAGTATTCAGACTTGAAGGTGGAGTTGAGTAGAACAGAGAGACATATTTTGAAAGAGATGGGTTTCATTTGCCATGTTGAGCATCCCCACAAGTTCATTTCGAATTACCTTGCCACTCTTGAATCACCTCCAGAGCTAACGCAAGAAGCCTGGAATTTAGCAAATGACAGCTTGCGTACAACTTTGTGTGTTCGATTCAAGAGTGAGGTTGTTGCTTGTGGTGTTGTGTATGCCGCTGCTCGGAGGTTTCATGTCCCCCTTCCTGAGAATCCCCCTTGGTGGAAGGTATTTGATGCTGACAAATCAGGGATTGATGAAGTTTGTAGGGTTCTTGCTCATCTGTATAGTCTTCCTAAAGCTCAGTATATTCCGGTCTGTAATGATGGAGATTCATTTACATTTTCTAGCAACAAATGGAATTCACAGTCCCAGCCAGATTCAAAGGAAGTTCCTAAGAGTAGCCCATCAACTGTTGCTGATACATCTAATTCAAAGGCGCCAACAGCTGTAGCCAATCCTGAATCCTCTGGATCAAAGGGTGTAAGCATAACAGCCTCCGATAAGGTAAAGGATTCTAAAGAAAGTGATGATGAATCTAAGAGCTTGCCTGTTGATTTAGAGGTAAGAGAAGATCTGAATATGAAATCCAAGACTGAACAAAGCAAAAGCAGGGACAGGGACAGGGACAGGGACAGGGATAGGGATAGGGACAGGGATAGGGAAAGAGAGAGGGACAAGGATAGAATAAAGGTACGAGATCGTGATCGGGGAGATAGAGAGGAAGCTGAGAGGGATAGAACCAAGGACCGAGGTCGTCGTTCTAAGGACAGAGCCAAAGATTCAGGGGGGCATTCAGAGAAATCAAGACATTTCTCATCAAGAGACCGTGACTACCACAGTTCCTCGTATTCTTCAAGGGAGAAGGATCGCTATAGACATCACCCCTATGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005911 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0008150 GO:0009506 GO:0009628 GO:0009651 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030054 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0055044 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_N

Protein Analysis

443

Amino Acids

50.96

Weight (kDa)

8.39

Isoelectric Point (pI)

52.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	8 - 100	5.1e-09	Cyclin, N-terminal domain
CycT2-like_C	PF21797	106 - 178	3.1e-08	Cyclin-T2-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008752)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26430 AT2G26430 AT2G26430 AT2G26430
fragaria_vesca	FvH4_6g04870 FvH4_6g04870
malus_domestica	MD04G1213300.v1.1 MD12G1227500.v1.1
prunus_persica	Prupe.6G333200_v2.0.a1 Prupe.6G333200_v2.0.a1 Prupe.7G087700_v2.0.a1
pyrus_communis	pycom04g18890 pycom12g21230
rosa_chinensis	RchiOBHm_Chr3g0453411
rosa_laevigata	RLG00000025517
rosa_multiflora	Rmu_sc0010297.1_g000002
rosa_roxburghii	Rroxscaffold_6G00430380
rosa_rugosa	Rorug02G0648700
rosa_samantha	Rh3AG051600 Rh3BG053000 Rh3CG052300 Rh3DG053100
rosa_wichuraiana	Rw3G003960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	871
AccB7I	CCANNNNNTGG	1 cut(s)	322
AccBSI	CCGCTC	1 cut(s)	135
AciI	CCGC	2 cut(s)	135, 609
AclWI	GGATC	5 cut(s)	118, 356, 369, 913, 1308
AcoI	YGGCCR	1 cut(s)	168
AcsI	RAATTY	2 cut(s)	529, 793
AcyI	GRCGYC	1 cut(s)	872
AdeI	CACNNNGTG	1 cut(s)	322
AfaI	GTAC	2 cut(s)	553, 1128
AfiI	CCNNNNNNNGG	3 cut(s)	322, 615, 654
AflIII	ACRYGT	1 cut(s)	21
AgsI	TTSAA	7 cut(s)	391, 427, 497, 574, 816, 867, 1290
AjnI	CCWGG	2 cut(s)	126, 524
Alw26I	GTCTC	3 cut(s)	86, 409, 1251
AlwI	GGATC	5 cut(s)	118, 356, 369, 913, 1308
AoxI	GGCC	1 cut(s)	168
ApeKI	GCWGC	3 cut(s)	83, 242, 611
ApoI	RAATTY	2 cut(s)	529, 793
AspLEI	GCGC	1 cut(s)	874
AspS9I	GGNCC	1 cut(s)	1180
AsuHPI	GGTGA	3 cut(s)	313, 492, 1307
AsuII	TTCGAA	1 cut(s)	476
AvaII	GGWCC	1 cut(s)	1180
AxyI	CCTNAGG	1 cut(s)	156
BalI	TGGCCA	1 cut(s)	170
BamHI	GGATCC	1 cut(s)	361
BanI	GGYRCC	1 cut(s)	871
BbsI	GAAGAC	1 cut(s)	716
BbvI	GCAGC	3 cut(s)	95, 229, 598
BccI	CCATC	3 cut(s)	427, 752, 847
BceAI	ACGGC	4 cut(s)	27, 43, 88, 127
BciT130I	CCWGG	2 cut(s)	128, 526
BcoDI	GTCTC	3 cut(s)	86, 409, 1251
BfaI	CTAG	3 cut(s)	246, 294, 780
BfmI	CTRYAG	2 cut(s)	882, 1306
BfoI	RGCGCY	1 cut(s)	875
BglII	AGATCT	1 cut(s)	1006
BisI	GCNGC	5 cut(s)	84, 136, 243, 609, 612
BlsI	GCNGC	5 cut(s)	85, 137, 244, 610, 613
Bme1390I	CCNGG	2 cut(s)	128, 526
Bme18I	GGWCC	1 cut(s)	1180
BmgT120I	GGNCC	1 cut(s)	1180
BmiI	GGNNCC	2 cut(s)	363, 873
BmrFI	CCNGG	2 cut(s)	128, 526
BmsI	GCATC	4 cut(s)	70, 272, 466, 658
BoxI	GACNNNNGTC	1 cut(s)	1185
BpiI	GAAGAC	1 cut(s)	716
BpmI	CTGGAG	3 cut(s)	68, 293, 489
Bpu14I	TTCGAA	1 cut(s)	476
BsaBI	GATNNNNATC	1 cut(s)	1137
BsaHI	GRCGYC	1 cut(s)	872
BsaI	GGTCTC	2 cut(s)	86, 1251
BsaJI	CCNNGG	3 cut(s)	650, 1176, 1183
BsaWI	WCCGGW	1 cut(s)	745
Bsc4I	CCNNNNNNNGG	3 cut(s)	322, 615, 654
Bse1I	ACTGG	1 cut(s)	178
Bse21I	CCTNAGG	1 cut(s)	156
Bse8I	GATNNNNATC	1 cut(s)	1137
BseBI	CCWGG	2 cut(s)	128, 526
BseDI	CCNNGG	3 cut(s)	650, 1176, 1183
BseGI	GGATG	1 cut(s)	457
BseJI	GATNNNNATC	1 cut(s)	1137
BseLI	CCNNNNNNNGG	3 cut(s)	322, 615, 654
BseMII	CTCAG	7 cut(s)	23, 115, 160, 170, 630, 749, 1152
BseNI	ACTGG	1 cut(s)	178
BseXI	GCAGC	3 cut(s)	95, 229, 598
BseYI	CCCAGC	1 cut(s)	804
BshFI	GGCC	1 cut(s)	170
BshNI	GGYRCC	1 cut(s)	871
BsiSI	CCGG	1 cut(s)	746
BslFI	GGGAC	9 cut(s)	83, 614, 787, 1061, 1067, 1073, 1079, 1097, 1121
BslI	CCNNNNNNNGG	3 cut(s)	322, 615, 654
BsmAI	GTCTC	3 cut(s)	86, 409, 1251
BsmFI	GGGAC	9 cut(s)	83, 614, 787, 1061, 1067, 1073, 1079, 1097, 1121
BsmI	GAATGC	3 cut(s)	156, 332, 1225
BsnI	GGCC	1 cut(s)	170
Bso31I	GGTCTC	2 cut(s)	86, 1251
Bsp119I	TTCGAA	1 cut(s)	476
Bsp143I	GATC	7 cut(s)	123, 361, 905, 1006, 1132, 1138, 1300
BspACI	CCGC	2 cut(s)	135, 609
BspANI	GGCC	1 cut(s)	170
BspCNI	CTCAG	7 cut(s)	24, 114, 159, 169, 631, 748, 1153
BspLI	GGNNCC	2 cut(s)	363, 873
BspPI	GGATC	5 cut(s)	118, 356, 369, 913, 1308
BspT104I	TTCGAA	1 cut(s)	476
BspT107I	GGYRCC	1 cut(s)	871
BspTNI	GGTCTC	2 cut(s)	86, 1251
BsrBI	CCGCTC	1 cut(s)	135
BsrI	ACTGG	1 cut(s)	178
BssECI	CCNNGG	3 cut(s)	650, 1176, 1183
BssMI	GATC	7 cut(s)	123, 361, 905, 1006, 1132, 1138, 1300
BssNI	GRCGYC	1 cut(s)	872
BssT1I	CCWWGG	2 cut(s)	650, 1176
Bst2UI	CCWGG	2 cut(s)	128, 526
Bst4CI	ACNGT	4 cut(s)	801, 847, 1262, 1274
BstACI	GRCGYC	1 cut(s)	872
BstBI	TTCGAA	1 cut(s)	476
BstC8I	GCNNGC	4 cut(s)	220, 261, 548, 980
BstF5I	GGATG	1 cut(s)	457
BstH2I	RGCGCY	1 cut(s)	875
BstHHI	GCGC	1 cut(s)	874
BstKTI	GATC	7 cut(s)	126, 364, 908, 1009, 1135, 1141, 1303
BstMAI	GTCTC	3 cut(s)	86, 409, 1251
BstMBI	GATC	7 cut(s)	123, 361, 905, 1006, 1132, 1138, 1300
BstMWI	GCNNNNNNNGC	3 cut(s)	151, 167, 878
BstNI	CCWGG	2 cut(s)	128, 526
BstPAI	GACNNNNGTC	1 cut(s)	1185
BstSCI	CCNGG	2 cut(s)	126, 524
BstSFI	CTRYAG	2 cut(s)	882, 1306
BstV1I	GCAGC	3 cut(s)	95, 229, 598
BstV2I	GAAGAC	1 cut(s)	716
BstX2I	RGATCY	2 cut(s)	361, 1006
BstYI	RGATCY	2 cut(s)	361, 1006
Bsu36I	CCTNAGG	1 cut(s)	156
BsuRI	GGCC	1 cut(s)	170
BtsCI	GGATG	1 cut(s)	457
BtsIMutI	CAGTG	1 cut(s)	171
Cac8I	GCNNGC	4 cut(s)	220, 261, 548, 980
CfoI	GCGC	1 cut(s)	874
Cfr13I	GGNCC	1 cut(s)	1180
Csp6I	GTAC	2 cut(s)	552, 1127
CviAII	CATG	3 cut(s)	227, 449, 626
CviQI	GTAC	2 cut(s)	552, 1127
DinI	GGCGCC	1 cut(s)	873
DpnI	GATC	7 cut(s)	125, 363, 907, 1008, 1134, 1140, 1302
DpnII	GATC	7 cut(s)	123, 361, 905, 1006, 1132, 1138, 1300
DraIII	CACNNNGTG	1 cut(s)	322
EaeI	YGGCCR	1 cut(s)	168
Eco130I	CCWWGG	2 cut(s)	650, 1176
Eco31I	GGTCTC	2 cut(s)	86, 1251
Eco47I	GGWCC	1 cut(s)	1180
Eco81I	CCTNAGG	1 cut(s)	156
EcoRI	GAATTC	1 cut(s)	793
EcoRII	CCWGG	2 cut(s)	126, 524
EcoT14I	CCWWGG	2 cut(s)	650, 1176
EgeI	GGCGCC	1 cut(s)	873
EheI	GGCGCC	1 cut(s)	873
ErhI	CCWWGG	2 cut(s)	650, 1176
FaeI	CATG	3 cut(s)	230, 452, 629
FaqI	GGGAC	9 cut(s)	83, 614, 787, 1061, 1067, 1073, 1079, 1097, 1121
FatI	CATG	3 cut(s)	226, 448, 625
Fnu4HI	GCNGC	5 cut(s)	84, 136, 243, 609, 612
FokI	GGATG	1 cut(s)	444
Fsp4HI	GCNGC	5 cut(s)	84, 136, 243, 609, 612
FspBI	CTAG	3 cut(s)	246, 294, 780
GlaI	GCGC	1 cut(s)	873
GluI	GCNGC	5 cut(s)	84, 136, 243, 609, 612
GsaI	CCCAGC	1 cut(s)	808
GsuI	CTGGAG	3 cut(s)	68, 293, 489
HaeII	RGCGCY	1 cut(s)	875
HaeIII	GGCC	1 cut(s)	170
HapII	CCGG	1 cut(s)	746
HhaI	GCGC	1 cut(s)	874
Hin1I	GRCGYC	1 cut(s)	872
Hin1II	CATG	3 cut(s)	230, 452, 629
Hin6I	GCGC	1 cut(s)	872
HinP1I	GCGC	1 cut(s)	872
HpaII	CCGG	1 cut(s)	746
HphI	GGTGA	3 cut(s)	313, 492, 1307
Hpy188I	TCNGA	8 cut(s)	33, 104, 149, 385, 618, 934, 1011, 1231
Hpy99I	CGWCG	4 cut(s)	41, 44, 64, 1194
HpyAV	CCTTC	5 cut(s)	60, 385, 644, 652, 1291
HpyCH4III	ACNGT	4 cut(s)	801, 847, 1262, 1274
HpyCH4IV	ACGT	1 cut(s)	23
HpyCH4V	TGCA	5 cut(s)	83, 204, 218, 263, 330
HpyF10VI	GCNNNNNNNGC	3 cut(s)	151, 167, 878
HpySE526I	ACGT	1 cut(s)	23
Hsp92I	GRCGYC	1 cut(s)	872
Hsp92II	CATG	3 cut(s)	230, 452, 629
HspAI	GCGC	1 cut(s)	872
KasI	GGCGCC	1 cut(s)	871
Kzo9I	GATC	7 cut(s)	123, 361, 905, 1006, 1132, 1138, 1300
Lsp1109I	GCAGC	3 cut(s)	95, 229, 598
LweI	GCATC	4 cut(s)	70, 272, 466, 658
MaeI	CTAG	3 cut(s)	246, 294, 780
MaeII	ACGT	1 cut(s)	23
MaeIII	GTNAC	1 cut(s)	1262
MalI	GATC	7 cut(s)	125, 363, 907, 1008, 1134, 1140, 1302
MbiI	CCGCTC	1 cut(s)	135
MboI	GATC	7 cut(s)	123, 361, 905, 1006, 1132, 1138, 1300
MboII	GAAGA	3 cut(s)	716, 1016, 1278
MflI	RGATCY	2 cut(s)	361, 1006
MlsI	TGGCCA	1 cut(s)	170
MluCI	AATT	4 cut(s)	478, 529, 793, 862
MluNI	TGGCCA	1 cut(s)	170
Mly113I	GGCGCC	1 cut(s)	872
Mox20I	TGGCCA	1 cut(s)	170
MscI	TGGCCA	1 cut(s)	170
MslI	CAYNNNNRTG	1 cut(s)	1320
Msp20I	TGGCCA	1 cut(s)	170
MspA1I	CMGCKG	2 cut(s)	611, 881
MspI	CCGG	1 cut(s)	746
MspR9I	CCNGG	2 cut(s)	128, 526
Mva1269I	GAATGC	3 cut(s)	156, 332, 1225
MvaI	CCWGG	2 cut(s)	128, 526
MwoI	GCNNNNNNNGC	3 cut(s)	151, 167, 878
NarI	GGCGCC	1 cut(s)	872
NdeII	GATC	7 cut(s)	123, 361, 905, 1006, 1132, 1138, 1300
NlaIII	CATG	3 cut(s)	230, 452, 629
NlaIV	GGNNCC	2 cut(s)	363, 873
NmuCI	GTSAC	1 cut(s)	1262
NspV	TTCGAA	1 cut(s)	476
PctI	GAATGC	3 cut(s)	156, 332, 1225
PflMI	CCANNNNNTGG	1 cut(s)	322
PfoI	TCCNGGA	1 cut(s)	126
PkrI	GCNGC	5 cut(s)	85, 137, 244, 610, 613
PluTI	GGCGCC	1 cut(s)	875
PshAI	GACNNNNGTC	1 cut(s)	1185
Psp6I	CCWGG	2 cut(s)	126, 524
PspFI	CCCAGC	1 cut(s)	804
PspGI	CCWGG	2 cut(s)	126, 524
PspN4I	GGNNCC	2 cut(s)	363, 873
PspPI	GGNCC	1 cut(s)	1180
PsuI	RGATCY	2 cut(s)	361, 1006
PvuII	CAGCTG	1 cut(s)	881
RsaI	GTAC	2 cut(s)	553, 1128
RsaNI	GTAC	2 cut(s)	552, 1127
RseI	CAYNNNNRTG	1 cut(s)	1320
SatI	GCNGC	5 cut(s)	84, 136, 243, 609, 612
Sau3AI	GATC	7 cut(s)	123, 361, 905, 1006, 1132, 1138, 1300
Sau96I	GGNCC	1 cut(s)	1180
ScrFI	CCNGG	2 cut(s)	128, 526
SfaNI	GCATC	4 cut(s)	70, 272, 466, 658
SfcI	CTRYAG	2 cut(s)	882, 1306
SfoI	GGCGCC	1 cut(s)	873
SfuI	TTCGAA	1 cut(s)	476
SinI	GGWCC	1 cut(s)	1180
SmiMI	CAYNNNNRTG	1 cut(s)	1320
Sse9I	AATT	4 cut(s)	478, 529, 793, 862
SsiI	CCGC	2 cut(s)	135, 609
SspDI	GGCGCC	1 cut(s)	871
SspMI	CTAG	3 cut(s)	246, 294, 780
StyD4I	CCNGG	2 cut(s)	126, 524
StyI	CCWWGG	2 cut(s)	650, 1176
TaaI	ACNGT	4 cut(s)	801, 847, 1262, 1274
TaiI	ACGT	1 cut(s)	26
TaqI	TCGA	3 cut(s)	62, 476, 568
TaqII	GACCGA	1 cut(s)	1197
TasI	AATT	4 cut(s)	478, 529, 793, 862
TauI	GCSGC	2 cut(s)	138, 611
TscAI	CASTG	1 cut(s)	178
TseFI	GTSAC	1 cut(s)	1262
TseI	GCWGC	3 cut(s)	83, 242, 611
Tsp45I	GTSAC	1 cut(s)	1262
TspDTI	ATGAA	8 cut(s)	179, 430, 460, 614, 705, 756, 981, 1031
TspRI	CASTG	1 cut(s)	178
Van91I	CCANNNNNTGG	1 cut(s)	322
VpaK11BI	GGWCC	1 cut(s)	1180
XapI	RAATTY	2 cut(s)	529, 793
XcmI	CCANNNNNNNNNTGG	1 cut(s)	355
XspI	CTAG	3 cut(s)	246, 294, 780

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.