MD12G1227500.v1.1

Belongs to the cyclin family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Forward (+)
30304727 .. 30307702
2976 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1227500.v1.1.491

Sequence Viewer

Length: 1353 bp
ATGATATACACGGCGATAGACACCTTCTACCTGACCGACGAGCAGTTGCAGAACTCGCCGTCGAGGAAGGACGGGATTGATGAACCCAAGGAAACCACGCTCAGAATCTACGGCTGTGATTTGATCCAAGAAAGCGGAATTCTGCTCAAATTACCTCAAGCTGTAATGGCGACTGGTCAGGTTCTGTTTCACCGCTTCTATTGCAAGAAGTCCTTTGCTCGCTTCAATGTCAAGAAAGTTGCGGCTAGCTGTGTGTGGCTTGCATCGAAACTGGAGGAATGCCCTAAGAAAGCCAGACAGGTGATCATTGTTTTCCACCGGATGGAATGCAGGAGGGAGAACCTACCCATTGAGCATTTGGATCCATATTCAAAGAAATATTCGGACTTGAAGATGGAGTTGAGTAGAACAGAAAGGCATATTTTGAAAGAGATGGGTTTCATTTGTCATGTTGAACATCCTCATAAATTCATATCAAATTACCTTGCCACTCTGGAAACACCTCGGGAATTAACACAAGAAGCCTGGAATCTAGCAAATGACAGTTTGCGCACAACATTGTGTGTTCGATTCAAGAGCGAGGTGGTTGCTTGCGGTGTGGTTTATGCTGCTGCTCGGAGATTTCAAGTACCACTTCCTGAAAATCCACCATGGTGGAAGGCATTTGATGCTGAGAAATCAGGGATTGACGAAATTTGTAGGGTTCTGGCTCATTTGTACAGCCTTCCTAAAGCAAAGTACATACCAGTCTGTAAAGAGGGTGACTCTTTTACATTCTCTAACAAGTCATGGATTTCGTCTCTGCCAGTTACAAAGGAAGTTCCAAAGAATGCTCCCGCTCCCGCAGCTATTGATGATACCTCTAATTCAAAGGATACAACAGCATTGAATCCTGAATCTAGTGGATCAAAGGGTGTGTTGGTCAAGCTACCCGTTGACAAGCCAAAGGACTCTAAAGAGAGTGGTGATGAAGCCAAGAGCATGGCTGTTGAGGGAGAGGCAAGAGAAGATGTCAATATGAAGTCAAAGTCTGAACGCCGCATGGAATCAAGCGGTGATAAAAGCAAGGACAGAGAGAGGGACAGGGAAAGAGATAGGGAAAGGGACCGGGACAGGGACAGAATAAGGGCTCGGGATCGTGATAGGGGCAGGGATTCTGACCGAGAACGAGATCGAGAGGAGGCCGAGAGGGACAGAAACAGGGATCGGAGTCGTCGTTCAAAGGATAGAGCAAAAGACTCAGGGGGGCATTCAGACAAATCGAGGCATCACTCGTCACGCGATCGTGACTATCACAGTTCCTCGTATTCTTCCCGGGATAAGGATCGCCATAGACATCATTCGCATGCTTGA

Protein Analysis

451

Amino Acids

52.0

Weight (kDa)

9.08

Isoelectric Point (pI)

48.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 10 - 147 2.3e-11 Cyclin, N-terminal domain
CycT2-like_C PF21797 153 - 225 4.3e-09 Cyclin-T2-like, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 551
AccB7I CCANNNNNTGG 1 cut(s) 322
AccBSI CCGCTC 1 cut(s) 839
AccII CGCG 1 cut(s) 1281
AciI CCGC 8 cut(s) 135, 193, 242, 594, 837, 843, 1039, 1053
AclWI GGATC 7 cut(s) 118, 356, 369, 913, 1143, 1212, 1332
AcsI RAATTY 3 cut(s) 138, 467, 693
AfaI GTAC 3 cut(s) 630, 719, 740
AfiI CCNNNNNNNGG 3 cut(s) 322, 1114, 1321
AjnI CCWGG 1 cut(s) 524
AleI CACNNNNGTG 1 cut(s) 652
AloI GAACNNNNNNTCC 2 cut(s) 1201, 1233
AluBI AGCT 4 cut(s) 161, 249, 848, 928
AluI AGCT 4 cut(s) 161, 249, 848, 928
Alw26I GTCTC 1 cut(s) 804
AlwI GGATC 7 cut(s) 118, 356, 369, 913, 1143, 1212, 1332
AlwNI CAGNNNCTG 1 cut(s) 184
Ama87I CYCGRG 3 cut(s) 504, 1131, 1314
AoxI GGCC 1 cut(s) 1182
ApeKI GCWGC 3 cut(s) 608, 611, 845
ApoI RAATTY 3 cut(s) 138, 467, 693
AspLEI GCGC 1 cut(s) 552
AspS9I GGNCC 1 cut(s) 1105
AsuC2I CCSGG 3 cut(s) 1109, 1315, 1316
AsuHPI GGTGA 5 cut(s) 182, 313, 773, 977, 1067
AsuNHI GCTAGC 1 cut(s) 245
AvaI CYCGRG 3 cut(s) 504, 1131, 1314
AvaII GGWCC 1 cut(s) 1105
BamHI GGATCC 1 cut(s) 361
BanII GRGCYC 1 cut(s) 1132
BbvI GCAGC 3 cut(s) 595, 598, 857
BccI CCATC 3 cut(s) 316, 388, 427
BceAI ACGGC 3 cut(s) 27, 43, 127
BcgI CGANNNNNNTGC 2 cut(s) 569, 603
BciT130I CCWGG 1 cut(s) 526
BciVI GTATCC 1 cut(s) 868
BclI TGATCA 1 cut(s) 303
BcnI CCSGG 3 cut(s) 1109, 1315, 1316
BcoDI GTCTC 1 cut(s) 804
BfaI CTAG 3 cut(s) 246, 533, 900
BfuI GTATCC 1 cut(s) 868
BisI GCNGC 5 cut(s) 243, 609, 612, 846, 1039
BlsI GCNGC 5 cut(s) 244, 610, 613, 847, 1040
Bme1390I CCNGG 4 cut(s) 526, 1109, 1315, 1316
Bme18I GGWCC 1 cut(s) 1105
BmeT110I CYCGRG 3 cut(s) 504, 1131, 1314
BmgT120I GGNCC 1 cut(s) 1105
BmiI GGNNCC 2 cut(s) 363, 1106
BmrFI CCNGG 4 cut(s) 526, 1109, 1315, 1316
BmsI GCATC 3 cut(s) 272, 658, 1276
BmtI GCTAGC 1 cut(s) 249
BplI GAGNNNNNCTC 2 cut(s) 749, 781
BpmI CTGGAG 1 cut(s) 293
BpuEI CTTGAG 1 cut(s) 141
BpuMI CCSGG 3 cut(s) 1109, 1315, 1316
BsaBI GATNNNNATC 1 cut(s) 1323
BsaJI CCNNGG 4 cut(s) 87, 503, 650, 1314
BsaWI WCCGGW 1 cut(s) 318
BsaXI ACNNNNNCTCC 2 cut(s) 1201, 1231
Bsc4I CCNNNNNNNGG 3 cut(s) 322, 1114, 1321
Bse1I ACTGG 4 cut(s) 178, 276, 746, 806
Bse8I GATNNNNATC 1 cut(s) 1323
BseBI CCWGG 1 cut(s) 526
BseDI CCNNGG 4 cut(s) 87, 503, 650, 1314
BseGI GGATG 2 cut(s) 327, 457
BseJI GATNNNNATC 1 cut(s) 1323
BseLI CCNNNNNNNGG 3 cut(s) 322, 1114, 1321
BseMII CTCAG 3 cut(s) 115, 663, 1254
BseNI ACTGG 4 cut(s) 178, 276, 746, 806
BseRI GAGGAG 1 cut(s) 1193
BseXI GCAGC 3 cut(s) 595, 598, 857
Bsh1236I CGCG 1 cut(s) 1281
Bsh1285I CGRYCG 1 cut(s) 1285
BshFI GGCC 1 cut(s) 1184
BsiEI CGRYCG 1 cut(s) 1285
BsiHKCI CYCGRG 3 cut(s) 504, 1131, 1314
BsiSI CCGG 3 cut(s) 319, 1108, 1315
BslFI GGGAC 5 cut(s) 1094, 1118, 1124, 1130, 1205
BslI CCNNNNNNNGG 3 cut(s) 322, 1114, 1321
BsmAI GTCTC 1 cut(s) 804
BsmBI CGTCTC 1 cut(s) 804
BsmFI GGGAC 5 cut(s) 1094, 1118, 1124, 1130, 1205
BsmI GAATGC 4 cut(s) 284, 332, 835, 1249
BsnI GGCC 1 cut(s) 1184
BsoBI CYCGRG 3 cut(s) 504, 1131, 1314
Bsp1286I GDGCHC 1 cut(s) 1132
Bsp1407I TGTACA 1 cut(s) 717
Bsp143I GATC 9 cut(s) 123, 303, 361, 905, 1135, 1171, 1204, 1282, 1324
Bsp19I CCATGG 1 cut(s) 650
BspACI CCGC 8 cut(s) 135, 193, 242, 594, 837, 843, 1039, 1053
BspANI GGCC 1 cut(s) 1184
BspCNI CTCAG 3 cut(s) 114, 664, 1253
BspFNI CGCG 1 cut(s) 1281
BspLI GGNNCC 2 cut(s) 363, 1106
BspOI GCTAGC 1 cut(s) 249
BspPI GGATC 7 cut(s) 118, 356, 369, 913, 1143, 1212, 1332
BsrBI CCGCTC 1 cut(s) 839
BsrGI TGTACA 1 cut(s) 717
BsrI ACTGG 4 cut(s) 178, 276, 746, 806
BssECI CCNNGG 4 cut(s) 87, 503, 650, 1314
BssMI GATC 9 cut(s) 123, 303, 361, 905, 1135, 1171, 1204, 1282, 1324
BssT1I CCWWGG 2 cut(s) 87, 650
Bst2UI CCWGG 1 cut(s) 526
Bst4CI ACNGT 2 cut(s) 545, 1298
BstAPI GCANNNNNTGC 1 cut(s) 668
BstAUI TGTACA 1 cut(s) 717
BstC8I GCNNGC 5 cut(s) 220, 247, 261, 592, 1347
BstDEI CTNAG 4 cut(s) 101, 285, 672, 1240
BstDSI CCRYGG 1 cut(s) 650
BstF5I GGATG 2 cut(s) 327, 457
BstFNI CGCG 1 cut(s) 1281
BstHHI GCGC 1 cut(s) 552
BstKTI GATC 9 cut(s) 126, 306, 364, 908, 1138, 1174, 1207, 1285, 1327
BstMAI GTCTC 1 cut(s) 804
BstMBI GATC 9 cut(s) 123, 303, 361, 905, 1135, 1171, 1204, 1282, 1324
BstMCI CGRYCG 1 cut(s) 1285
BstMWI GCNNNNNNNGC 5 cut(s) 55, 167, 201, 668, 845
BstNI CCWGG 1 cut(s) 526
BstNSI RCATGY 1 cut(s) 1349
BstSCI CCNGG 4 cut(s) 524, 1107, 1313, 1314
BstUI CGCG 1 cut(s) 1281
BstV1I GCAGC 3 cut(s) 595, 598, 857
BstX2I RGATCY 1 cut(s) 361
BstXI CCANNNNNNTGG 2 cut(s) 654, 982
BstYI RGATCY 1 cut(s) 361
BsuI GTATCC 1 cut(s) 868
BsuRI GGCC 1 cut(s) 1184
BtgI CCRYGG 1 cut(s) 650
BtsCI GGATG 2 cut(s) 327, 457
Cac8I GCNNGC 5 cut(s) 220, 247, 261, 592, 1347
CaiI CAGNNNCTG 1 cut(s) 184
CfoI GCGC 1 cut(s) 552
Cfr13I GGNCC 1 cut(s) 1105
Cfr9I CCCGGG 1 cut(s) 1314
Csp6I GTAC 3 cut(s) 629, 718, 739
CviAII CATG 6 cut(s) 449, 651, 789, 982, 1042, 1346
CviQI GTAC 3 cut(s) 629, 718, 739
DdeI CTNAG 4 cut(s) 101, 285, 672, 1240
DpnI GATC 9 cut(s) 125, 305, 363, 907, 1137, 1173, 1206, 1284, 1326
DpnII GATC 9 cut(s) 123, 303, 361, 905, 1135, 1171, 1204, 1282, 1324
Eco130I CCWWGG 2 cut(s) 87, 650
Eco24I GRGCYC 1 cut(s) 1132
Eco47I GGWCC 1 cut(s) 1105
Eco88I CYCGRG 3 cut(s) 504, 1131, 1314
EcoRI GAATTC 1 cut(s) 138
EcoRII CCWGG 1 cut(s) 524
EcoT14I CCWWGG 2 cut(s) 87, 650
EcoT38I GRGCYC 1 cut(s) 1132
ErhI CCWWGG 2 cut(s) 87, 650
Esp3I CGTCTC 1 cut(s) 804
FaeI CATG 6 cut(s) 452, 654, 792, 985, 1045, 1349
FalI AAGNNNNNCTT 4 cut(s) 197, 229, 618, 650
FaqI GGGAC 5 cut(s) 1094, 1118, 1124, 1130, 1205
FatI CATG 6 cut(s) 448, 650, 788, 981, 1041, 1345
FauI CCCGC 2 cut(s) 844, 850
FbaI TGATCA 1 cut(s) 303
Fnu4HI GCNGC 5 cut(s) 243, 609, 612, 846, 1039
FokI GGATG 2 cut(s) 334, 444
FriOI GRGCYC 1 cut(s) 1132
Fsp4HI GCNGC 5 cut(s) 243, 609, 612, 846, 1039
FspBI CTAG 3 cut(s) 246, 533, 900
FspI TGCGCA 1 cut(s) 551
GlaI GCGC 1 cut(s) 551
GluI GCNGC 5 cut(s) 243, 609, 612, 846, 1039
GsuI CTGGAG 1 cut(s) 293
HaeIII GGCC 1 cut(s) 1184
HapII CCGG 3 cut(s) 319, 1108, 1315
HhaI GCGC 1 cut(s) 552
Hin1II CATG 6 cut(s) 452, 654, 792, 985, 1045, 1349
Hin6I GCGC 1 cut(s) 550
HinP1I GCGC 1 cut(s) 550
HincII GTYRAC 1 cut(s) 937
HindII GTYRAC 1 cut(s) 937
HpaII CCGG 3 cut(s) 319, 1108, 1315
HphI GGTGA 5 cut(s) 182, 313, 773, 977, 1067
Hpy166II GTNNAC 1 cut(s) 937
Hpy188I TCNGA 7 cut(s) 104, 385, 618, 1033, 1159, 1209, 1255
Hpy8I GTNNAC 1 cut(s) 937
Hpy99I CGWCG 3 cut(s) 41, 64, 1218
HpyAV CCTTC 4 cut(s) 34, 61, 652, 734
HpyCH4III ACNGT 2 cut(s) 545, 1298
HpyCH4V TGCA 4 cut(s) 49, 204, 263, 330
HpyF10VI GCNNNNNNNGC 5 cut(s) 55, 167, 201, 668, 845
HpyF3I CTNAG 4 cut(s) 101, 285, 672, 1240
Hsp92II CATG 6 cut(s) 452, 654, 792, 985, 1045, 1349
HspAI GCGC 1 cut(s) 550
Ksp22I TGATCA 1 cut(s) 303
Kzo9I GATC 9 cut(s) 123, 303, 361, 905, 1135, 1171, 1204, 1282, 1324
LmnI GCTCC 2 cut(s) 838, 844
Lsp1109I GCAGC 3 cut(s) 595, 598, 857
LweI GCATC 3 cut(s) 272, 658, 1276
MaeI CTAG 3 cut(s) 246, 533, 900
MaeIII GTNAC 4 cut(s) 761, 808, 1275, 1286
MalI GATC 9 cut(s) 125, 305, 363, 907, 1137, 1173, 1206, 1284, 1326
MbiI CCGCTC 1 cut(s) 839
MboI GATC 9 cut(s) 123, 303, 361, 905, 1135, 1171, 1204, 1282, 1324
MboII GAAGA 3 cut(s) 403, 1019, 1302
MflI RGATCY 1 cut(s) 361
MhlI GDGCHC 1 cut(s) 1132
MluCI AATT 7 cut(s) 138, 149, 467, 478, 509, 693, 865
MlyI GAGTC 4 cut(s) 758, 944, 1219, 1232
MseI TTAA 1 cut(s) 512
MslI CAYNNNNRTG 2 cut(s) 652, 1344
MspI CCGG 3 cut(s) 319, 1108, 1315
MspR9I CCNGG 4 cut(s) 526, 1109, 1315, 1316
Mva1269I GAATGC 4 cut(s) 284, 332, 835, 1249
MvaI CCWGG 1 cut(s) 526
MvnI CGCG 1 cut(s) 1281
MwoI GCNNNNNNNGC 5 cut(s) 55, 167, 201, 668, 845
NciI CCSGG 3 cut(s) 1109, 1315, 1316
NcoI CCATGG 1 cut(s) 650
NdeII GATC 9 cut(s) 123, 303, 361, 905, 1135, 1171, 1204, 1282, 1324
NheI GCTAGC 1 cut(s) 245
NlaIII CATG 6 cut(s) 452, 654, 792, 985, 1045, 1349
NlaIV GGNNCC 2 cut(s) 363, 1106
NmeAIII GCCGAG 1 cut(s) 1210
NmuCI GTSAC 3 cut(s) 761, 1275, 1286
NsbI TGCGCA 1 cut(s) 551
NspI RCATGY 1 cut(s) 1349
OliI CACNNNNGTG 1 cut(s) 652
PaeI GCATGC 1 cut(s) 1349
PcsI WCGNNNNNNNCGW 1 cut(s) 1213
PctI GAATGC 4 cut(s) 284, 332, 835, 1249
PfeI GAWTC 7 cut(s) 105, 529, 570, 889, 896, 1046, 1154
PflMI CCANNNNNTGG 1 cut(s) 322
PkrI GCNGC 5 cut(s) 244, 610, 613, 847, 1040
Ple19I CGATCG 1 cut(s) 1285
PleI GAGTC 4 cut(s) 758, 944, 1218, 1232
PpsI GAGTC 4 cut(s) 758, 944, 1218, 1232
Psp6I CCWGG 1 cut(s) 524
PspGI CCWGG 1 cut(s) 524
PspN4I GGNNCC 2 cut(s) 363, 1106
PspPI GGNCC 1 cut(s) 1105
PstNI CAGNNNCTG 1 cut(s) 184
PsuI RGATCY 1 cut(s) 361
PvuI CGATCG 1 cut(s) 1285
RsaI GTAC 3 cut(s) 630, 719, 740
RsaNI GTAC 3 cut(s) 629, 718, 739
RseI CAYNNNNRTG 2 cut(s) 652, 1344
SaqAI TTAA 1 cut(s) 512
SatI GCNGC 5 cut(s) 243, 609, 612, 846, 1039
Sau3AI GATC 9 cut(s) 123, 303, 361, 905, 1135, 1171, 1204, 1282, 1324
Sau96I GGNCC 1 cut(s) 1105
SchI GAGTC 4 cut(s) 758, 944, 1219, 1232
ScrFI CCNGG 4 cut(s) 526, 1109, 1315, 1316
SduI GDGCHC 1 cut(s) 1132
SfaNI GCATC 3 cut(s) 272, 658, 1276
SinI GGWCC 1 cut(s) 1105
SmaI CCCGGG 1 cut(s) 1316
SmiMI CAYNNNNRTG 2 cut(s) 652, 1344
SmlI CTYRAG 1 cut(s) 156
SmoI CTYRAG 1 cut(s) 156
SphI GCATGC 1 cut(s) 1349
Sse9I AATT 7 cut(s) 138, 149, 467, 478, 509, 693, 865
SsiI CCGC 8 cut(s) 135, 193, 242, 594, 837, 843, 1039, 1053
SspI AATATT 1 cut(s) 380
SspMI CTAG 3 cut(s) 246, 533, 900
StyD4I CCNGG 4 cut(s) 524, 1107, 1313, 1314
StyI CCWWGG 2 cut(s) 87, 650
TaaI ACNGT 2 cut(s) 545, 1298
TaqI TCGA 5 cut(s) 62, 266, 568, 1174, 1262
TaqII GACCGA 2 cut(s) 50, 1176
TasI AATT 7 cut(s) 138, 149, 467, 478, 509, 693, 865
TatI WGTACW 2 cut(s) 717, 738
TauI GCSGC 2 cut(s) 245, 1041
TfiI GAWTC 7 cut(s) 105, 529, 570, 889, 896, 1046, 1154
Tru1I TTAA 1 cut(s) 512
Tru9I TTAA 1 cut(s) 512
TseFI GTSAC 3 cut(s) 761, 1275, 1286
TseI GCWGC 3 cut(s) 608, 611, 845
Tsp45I GTSAC 3 cut(s) 761, 1275, 1286
TspDTI ATGAA 5 cut(s) 96, 430, 460, 984, 1034
TspMI CCCGGG 1 cut(s) 1314
Van91I CCANNNNNTGG 1 cut(s) 322
VpaK11BI GGWCC 1 cut(s) 1105
XapI RAATTY 3 cut(s) 138, 467, 693
XceI RCATGY 1 cut(s) 1349
XcmI CCANNNNNNNNNTGG 1 cut(s) 355
XmaI CCCGGG 1 cut(s) 1314
XspI CTAG 3 cut(s) 246, 533, 900
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.