MD04G1213300.v1.1

Belongs to the cyclin family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Forward (+)
29706358 .. 29709344
2987 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1213300.v1.1.491

Sequence Viewer

Length: 1341 bp
ATGATATACACGGCGATAGACACCTTCTACCTGACCGACGAGCAGCTACAGAATTCGCCGTCGAGAAAGGACGGGACAGATGAAGCCACGGAGACCACGCTCAGAATCTACGGCTGTGATTTGATCCAAGAGAGCGGAATTTTGCTCAAATTACCTCAAGCTGTAATGGCGACTGGTCAGGTTCTGTTTCACCGCTTCTACTGCAAGAAGTCCTTTGCACGCTTCAATGTCAAGAAAGTTGCCGCTAGTTGTGTGTGGCTTGCATCGAAACTGGAGGAGTGCCCGAAGAAAGCCAGACAGGTGATCATTGTTTTCCACAGGATGGAATCTAGGAGGGAGAACTTACCCATTGAGCATTTGGACCCATTTTCAAAGAAATATTCGGACTTGAAGATGGAGTTGAGTAGAACAGAAAGGCATATTTTGAAAGAGATGGGTTTCATCTGTCATGTTGAACATCCTCATAAGTTCATATCAAATTACCTTGCCACTTTGGAAACACCTCCGGAATTAACACAAGAAGCCTGGAATCTAGCAAATGACAGTTTGCGGACGACGTTGTGTGTTCGATTCAAGAGCGAGGTTGTTGCTTGTGGTGTGGTTTATGCTGCTGCTCGGAGATTTCAAGTACCACTTCCTGAAAATCCGCCATGGTGGAAGGCATTTGATGCTGAGAAATCAGGGGTTGACGAAGTTTGTAGGGTTCTGGCTCATTTGTACAGCCTTCCTAAAGCAAAGTACATACCGGTCTGTAAAGAGGGCGACTCTTTTACATTTTCCAACAAGTCATGGATTTCGTCTCAGCCAGTTACAAAGGAAGTTCCGAAGAATGCTCCCGAAGCTACTGACGATGCCTCTAATTCAAAGGATCCAACAGCAGTCAATCCTGAATCTGGTGGATCAAAGGGTGTCTTGGTCAAGCTATCCGTTGACAAGCTGAAGGACTCTAAAGAGAGTGGTGATGAATCCAAGAGCATGGCTGTTGAGGGAGAGGCAAGAGAAGATGTCAATACGAAATCCAAGTCTGAACGCCGCGTGGAATCAAGCAGTGATAAAAGCAAGGACAGAGAGAGGGACAGGGAGAGAGACAGGGACAGGGACAGAAAAAGGGTCCGGGATCGTGATAGGGGCAGGGATTCTGACCGGGAACGAGATCGAGAGGAGGCCGAGAGGGATAGAAACAGGGATCGAAGTCATCGTTCAAGGGATAGAGCGAAAGATTCAGGGGGGCATTCAGATAAATCAAGACATCACTCGTCACGAGATCGTGACTATCACAGTTCCTCGTATGCTTCCCGGGAGAAGGATCGTGATCGCCATAGACATCATTCGTATGCTTGA

Protein Analysis

447

Amino Acids

51.41

Weight (kDa)

8.92

Isoelectric Point (pI)

49.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 10 - 147 1.7e-11 Cyclin, N-terminal domain
CycT2-like_C PF21797 153 - 224 3.2e-08 Cyclin-T2-like, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 322
AccBSI CCGCTC 1 cut(s) 135
AccII CGCG 1 cut(s) 1035
AccIII TCCGGA 1 cut(s) 505
AciI CCGC 6 cut(s) 135, 193, 243, 550, 647, 1033
AclWI GGATC 7 cut(s) 118, 863, 876, 907, 1125, 1194, 1314
AcsI RAATTY 2 cut(s) 52, 138
AcuI CTGAAG 1 cut(s) 959
AfaI GTAC 3 cut(s) 630, 719, 740
AfiI CCNNNNNNNGG 3 cut(s) 322, 893, 1303
AgeI ACCGGT 1 cut(s) 745
AgsI TTSAA 9 cut(s) 226, 372, 391, 427, 455, 574, 626, 864, 1203
AjnI CCWGG 1 cut(s) 524
AluBI AGCT 5 cut(s) 46, 161, 842, 922, 937
AluI AGCT 5 cut(s) 46, 161, 842, 922, 937
Alw26I GTCTC 3 cut(s) 86, 804, 1080
AlwI GGATC 7 cut(s) 118, 863, 876, 907, 1125, 1194, 1314
AlwNI CAGNNNCTG 1 cut(s) 184
Ama87I CYCGRG 1 cut(s) 1296
Aor13HI TCCGGA 1 cut(s) 505
AoxI GGCC 1 cut(s) 1164
ApeKI GCWGC 3 cut(s) 43, 608, 611
ApoI RAATTY 2 cut(s) 52, 138
ArsI GACNNNNNNTTYG 2 cut(s) 1007, 1039
AsiGI ACCGGT 1 cut(s) 745
AspS9I GGNCC 2 cut(s) 361, 1111
AsuC2I CCSGG 4 cut(s) 1115, 1145, 1297, 1298
AsuHPI GGTGA 3 cut(s) 182, 313, 971
AvaI CYCGRG 1 cut(s) 1296
AvaII GGWCC 2 cut(s) 361, 1111
BaeGI GKGCMC 1 cut(s) 284
BamHI GGATCC 1 cut(s) 868
BauI CACGAG 1 cut(s) 1260
BbvI GCAGC 3 cut(s) 55, 595, 598
BccI CCATC 3 cut(s) 316, 388, 427
BceAI ACGGC 3 cut(s) 27, 43, 127
BcgI CGANNNNNNTGC 2 cut(s) 569, 603
BciT130I CCWGG 1 cut(s) 526
BclI TGATCA 1 cut(s) 303
BcnI CCSGG 4 cut(s) 1115, 1145, 1297, 1298
BcoDI GTCTC 3 cut(s) 86, 804, 1080
BfaI CTAG 3 cut(s) 246, 330, 533
BfmI CTRYAG 1 cut(s) 47
BisI GCNGC 5 cut(s) 44, 243, 609, 612, 1033
BlsI GCNGC 5 cut(s) 45, 244, 610, 613, 1034
Bme1390I CCNGG 5 cut(s) 526, 1115, 1145, 1297, 1298
Bme18I GGWCC 2 cut(s) 361, 1111
BmeT110I CYCGRG 1 cut(s) 1296
BmgT120I GGNCC 2 cut(s) 361, 1111
BmiI GGNNCC 3 cut(s) 363, 870, 1112
BmrFI CCNGG 5 cut(s) 526, 1115, 1145, 1297, 1298
BmsI GCATC 3 cut(s) 272, 658, 841
BplI GAGNNNNNCTC 2 cut(s) 749, 781
BpmI CTGGAG 1 cut(s) 293
BpuEI CTTGAG 1 cut(s) 141
BpuMI CCSGG 4 cut(s) 1115, 1145, 1297, 1298
BsaBI GATNNNNATC 1 cut(s) 1311
BsaI GGTCTC 1 cut(s) 86
BsaJI CCNNGG 3 cut(s) 87, 650, 1296
BsaWI WCCGGW 2 cut(s) 505, 745
Bsc4I CCNNNNNNNGG 3 cut(s) 322, 893, 1303
Bse118I RCCGGY 1 cut(s) 745
Bse1I ACTGG 3 cut(s) 178, 276, 806
Bse8I GATNNNNATC 1 cut(s) 1311
BseAI TCCGGA 1 cut(s) 505
BseBI CCWGG 1 cut(s) 526
BseDI CCNNGG 3 cut(s) 87, 650, 1296
BseGI GGATG 2 cut(s) 327, 457
BseJI GATNNNNATC 1 cut(s) 1311
BseLI CCNNNNNNNGG 3 cut(s) 322, 893, 1303
BseMII CTCAG 3 cut(s) 115, 663, 815
BseNI ACTGG 3 cut(s) 178, 276, 806
BseRI GAGGAG 2 cut(s) 290, 1175
BseSI GKGCMC 1 cut(s) 284
BseXI GCAGC 3 cut(s) 55, 595, 598
Bsh1236I CGCG 1 cut(s) 1035
BshFI GGCC 1 cut(s) 1166
BshTI ACCGGT 1 cut(s) 745
BsiHKCI CYCGRG 1 cut(s) 1296
BsiSI CCGG 5 cut(s) 506, 746, 1114, 1144, 1297
BslFI GGGAC 4 cut(s) 88, 1088, 1106, 1112
BslI CCNNNNNNNGG 3 cut(s) 322, 893, 1303
BsmAI GTCTC 3 cut(s) 86, 804, 1080
BsmBI CGTCTC 1 cut(s) 804
BsmFI GGGAC 4 cut(s) 88, 1088, 1106, 1112
BsmI GAATGC 2 cut(s) 835, 1231
BsnI GGCC 1 cut(s) 1166
Bso31I GGTCTC 1 cut(s) 86
BsoBI CYCGRG 1 cut(s) 1296
Bsp1286I GDGCHC 1 cut(s) 284
Bsp13I TCCGGA 1 cut(s) 505
Bsp1407I TGTACA 1 cut(s) 717
Bsp19I CCATGG 1 cut(s) 650
BspACI CCGC 6 cut(s) 135, 193, 243, 550, 647, 1033
BspANI GGCC 1 cut(s) 1166
BspCNI CTCAG 3 cut(s) 114, 664, 814
BspEI TCCGGA 1 cut(s) 505
BspFNI CGCG 1 cut(s) 1035
BspLI GGNNCC 3 cut(s) 363, 870, 1112
BspPI GGATC 7 cut(s) 118, 863, 876, 907, 1125, 1194, 1314
BspTNI GGTCTC 1 cut(s) 86
BsrBI CCGCTC 1 cut(s) 135
BsrFI RCCGGY 1 cut(s) 745
BsrGI TGTACA 1 cut(s) 717
BsrI ACTGG 3 cut(s) 178, 276, 806
BssAI RCCGGY 1 cut(s) 745
BssECI CCNNGG 3 cut(s) 87, 650, 1296
BssSI CACGAG 1 cut(s) 1260
BssT1I CCWWGG 1 cut(s) 650
Bst2BI CACGAG 1 cut(s) 1260
Bst2UI CCWGG 1 cut(s) 526
Bst4CI ACNGT 2 cut(s) 545, 1280
BstAPI GCANNNNNTGC 1 cut(s) 668
BstAUI TGTACA 1 cut(s) 717
BstC8I GCNNGC 2 cut(s) 220, 261
BstDEI CTNAG 3 cut(s) 101, 672, 801
BstDSI CCRYGG 2 cut(s) 87, 650
BstF5I GGATG 2 cut(s) 327, 457
BstFNI CGCG 1 cut(s) 1035
BstMAI GTCTC 3 cut(s) 86, 804, 1080
BstMWI GCNNNNNNNGC 4 cut(s) 167, 201, 668, 839
BstNI CCWGG 1 cut(s) 526
BstSCI CCNGG 5 cut(s) 524, 1113, 1143, 1295, 1296
BstSFI CTRYAG 1 cut(s) 47
BstSLI GKGCMC 1 cut(s) 284
BstUI CGCG 1 cut(s) 1035
BstV1I GCAGC 3 cut(s) 55, 595, 598
BstX2I RGATCY 1 cut(s) 868
BstXI CCANNNNNNTGG 1 cut(s) 976
BstYI RGATCY 1 cut(s) 868
BsuRI GGCC 1 cut(s) 1166
BtgI CCRYGG 2 cut(s) 87, 650
BtsCI GGATG 2 cut(s) 327, 457
BtsI GCAGTG 1 cut(s) 1054
BtsIMutI CAGTG 1 cut(s) 1054
Cac8I GCNNGC 2 cut(s) 220, 261
CaiI CAGNNNCTG 1 cut(s) 184
Cfr10I RCCGGY 1 cut(s) 745
Cfr13I GGNCC 2 cut(s) 361, 1111
Cfr9I CCCGGG 1 cut(s) 1296
Csp6I GTAC 3 cut(s) 629, 718, 739
CspAI ACCGGT 1 cut(s) 745
CviAII CATG 4 cut(s) 449, 651, 789, 976
CviQI GTAC 3 cut(s) 629, 718, 739
DdeI CTNAG 3 cut(s) 101, 672, 801
EciI GGCGGA 1 cut(s) 636
Eco130I CCWWGG 1 cut(s) 650
Eco31I GGTCTC 1 cut(s) 86
Eco47I GGWCC 2 cut(s) 361, 1111
Eco57I CTGAAG 1 cut(s) 959
Eco88I CYCGRG 1 cut(s) 1296
EcoRI GAATTC 1 cut(s) 52
EcoRII CCWGG 1 cut(s) 524
EcoT14I CCWWGG 1 cut(s) 650
ErhI CCWWGG 1 cut(s) 650
Esp3I CGTCTC 1 cut(s) 804
FaeI CATG 4 cut(s) 452, 654, 792, 979
FalI AAGNNNNNCTT 6 cut(s) 197, 229, 618, 650, 896, 928
FaqI GGGAC 4 cut(s) 88, 1088, 1106, 1112
FatI CATG 4 cut(s) 448, 650, 788, 975
FbaI TGATCA 1 cut(s) 303
Fnu4HI GCNGC 5 cut(s) 44, 243, 609, 612, 1033
FokI GGATG 2 cut(s) 334, 444
Fsp4HI GCNGC 5 cut(s) 44, 243, 609, 612, 1033
FspBI CTAG 3 cut(s) 246, 330, 533
GluI GCNGC 5 cut(s) 44, 243, 609, 612, 1033
GsuI CTGGAG 1 cut(s) 293
HaeIII GGCC 1 cut(s) 1166
HapII CCGG 5 cut(s) 506, 746, 1114, 1144, 1297
Hin1II CATG 4 cut(s) 452, 654, 792, 979
HincII GTYRAC 2 cut(s) 688, 931
HindII GTYRAC 2 cut(s) 688, 931
HpaII CCGG 5 cut(s) 506, 746, 1114, 1144, 1297
HphI GGTGA 3 cut(s) 182, 313, 971
Hpy166II GTNNAC 2 cut(s) 688, 931
Hpy188I TCNGA 7 cut(s) 104, 385, 618, 825, 1027, 1141, 1237
Hpy8I GTNNAC 2 cut(s) 688, 931
Hpy99I CGWCG 3 cut(s) 41, 64, 559
HpyAV CCTTC 5 cut(s) 34, 652, 734, 934, 1297
HpyCH4III ACNGT 2 cut(s) 545, 1280
HpyCH4IV ACGT 1 cut(s) 557
HpyCH4V TGCA 3 cut(s) 204, 218, 263
HpyF10VI GCNNNNNNNGC 4 cut(s) 167, 201, 668, 839
HpyF3I CTNAG 3 cut(s) 101, 672, 801
HpySE526I ACGT 1 cut(s) 557
Hsp92II CATG 4 cut(s) 452, 654, 792, 979
Kpn2I TCCGGA 1 cut(s) 505
Ksp22I TGATCA 1 cut(s) 303
LmnI GCTCC 1 cut(s) 838
Lsp1109I GCAGC 3 cut(s) 55, 595, 598
LweI GCATC 3 cut(s) 272, 658, 841
MaeI CTAG 3 cut(s) 246, 330, 533
MaeII ACGT 1 cut(s) 557
MaeIII GTNAC 3 cut(s) 808, 1257, 1268
MbiI CCGCTC 1 cut(s) 135
MboII GAAGA 4 cut(s) 298, 403, 838, 1013
MflI RGATCY 1 cut(s) 868
MhlI GDGCHC 1 cut(s) 284
MluCI AATT 6 cut(s) 52, 138, 149, 478, 509, 859
MlyI GAGTC 2 cut(s) 758, 938
MmeI TCCRAC 2 cut(s) 804, 896
MroI TCCGGA 1 cut(s) 505
MseI TTAA 1 cut(s) 512
MslI CAYNNNNRTG 1 cut(s) 1332
MspI CCGG 5 cut(s) 506, 746, 1114, 1144, 1297
MspR9I CCNGG 5 cut(s) 526, 1115, 1145, 1297, 1298
Mva1269I GAATGC 2 cut(s) 835, 1231
MvaI CCWGG 1 cut(s) 526
MvnI CGCG 1 cut(s) 1035
MwoI GCNNNNNNNGC 4 cut(s) 167, 201, 668, 839
NciI CCSGG 4 cut(s) 1115, 1145, 1297, 1298
NcoI CCATGG 1 cut(s) 650
NlaIII CATG 4 cut(s) 452, 654, 792, 979
NlaIV GGNNCC 3 cut(s) 363, 870, 1112
NmeAIII GCCGAG 1 cut(s) 1192
NmuCI GTSAC 2 cut(s) 1257, 1268
PcsI WCGNNNNNNNCGW 1 cut(s) 1195
PctI GAATGC 2 cut(s) 835, 1231
PfeI GAWTC 9 cut(s) 105, 326, 529, 570, 890, 965, 1040, 1136, 1220
PflMI CCANNNNNTGG 1 cut(s) 322
PfoI TCCNGGA 1 cut(s) 1113
PinAI ACCGGT 1 cut(s) 745
PkrI GCNGC 5 cut(s) 45, 244, 610, 613, 1034
PleI GAGTC 2 cut(s) 758, 938
PpsI GAGTC 2 cut(s) 758, 938
Psp6I CCWGG 1 cut(s) 524
PspGI CCWGG 1 cut(s) 524
PspN4I GGNNCC 3 cut(s) 363, 870, 1112
PspPI GGNCC 2 cut(s) 361, 1111
PstNI CAGNNNCTG 1 cut(s) 184
PsuI RGATCY 1 cut(s) 868
RsaI GTAC 3 cut(s) 630, 719, 740
RsaNI GTAC 3 cut(s) 629, 718, 739
RseI CAYNNNNRTG 1 cut(s) 1332
SaqAI TTAA 1 cut(s) 512
SatI GCNGC 5 cut(s) 44, 243, 609, 612, 1033
Sau96I GGNCC 2 cut(s) 361, 1111
SchI GAGTC 2 cut(s) 758, 938
ScrFI CCNGG 5 cut(s) 526, 1115, 1145, 1297, 1298
SduI GDGCHC 1 cut(s) 284
SfaNI GCATC 3 cut(s) 272, 658, 841
SfcI CTRYAG 1 cut(s) 47
SinI GGWCC 2 cut(s) 361, 1111
SmaI CCCGGG 1 cut(s) 1298
SmiMI CAYNNNNRTG 1 cut(s) 1332
SmlI CTYRAG 1 cut(s) 156
SmoI CTYRAG 1 cut(s) 156
Sse9I AATT 6 cut(s) 52, 138, 149, 478, 509, 859
SsiI CCGC 6 cut(s) 135, 193, 243, 550, 647, 1033
SspI AATATT 1 cut(s) 380
SspMI CTAG 3 cut(s) 246, 330, 533
StyD4I CCNGG 5 cut(s) 524, 1113, 1143, 1295, 1296
StyI CCWWGG 1 cut(s) 650
TaaI ACNGT 2 cut(s) 545, 1280
TaiI ACGT 1 cut(s) 560
TaqI TCGA 5 cut(s) 62, 266, 568, 1156, 1189
TaqII GACCGA 1 cut(s) 50
TasI AATT 6 cut(s) 52, 138, 149, 478, 509, 859
TatI WGTACW 2 cut(s) 717, 738
TauI GCSGC 2 cut(s) 245, 1035
TfiI GAWTC 9 cut(s) 105, 326, 529, 570, 890, 965, 1040, 1136, 1220
Tru1I TTAA 1 cut(s) 512
Tru9I TTAA 1 cut(s) 512
TscAI CASTG 1 cut(s) 1054
TseFI GTSAC 2 cut(s) 1257, 1268
TseI GCWGC 3 cut(s) 43, 608, 611
Tsp45I GTSAC 2 cut(s) 1257, 1268
TspDTI ATGAA 4 cut(s) 96, 430, 460, 978
TspGWI ACGGA 2 cut(s) 104, 916
TspMI CCCGGG 1 cut(s) 1296
TspRI CASTG 1 cut(s) 1054
Van91I CCANNNNNTGG 1 cut(s) 322
VpaK11BI GGWCC 2 cut(s) 361, 1111
XapI RAATTY 2 cut(s) 52, 138
XcmI CCANNNNNNNNNTGG 1 cut(s) 355
XmaI CCCGGG 1 cut(s) 1296
XspI CTAG 3 cut(s) 246, 330, 533
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.