Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0008752

Physical Location & Seq

Genomic Coordinates Forward (+)

28985591 .. 28988730

Gene Structure 3140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G333200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1425 bp

ATGATATACACGGCGATAGACACGTTCTATCTGACCGATGAGCAATTGCAGAACTCGCCGTCGAGAAAGGACGGCATAGATGAGGCCACGGAGACCACGCTCAGAATCTATGGCTGTGATTTAATCCAAGAAAGCGGAATTTTGCTCAGATTACCTCAAGCTGTTATGGCCACTGGTCAGGTTCTGTTTCACCGATTCTATTGTAAGAAGTCCTTTGCACGCTTCAACGTCAAGAAAGTTGCTGCTAGCTGTTTGTGGCTTGCATCAAAACTGGAGGAATGCCCTAAAAAAGCCAGGCAGGTTATCATTGTTTTCCACAGGATGGAATGTAGGAGGGAGAACCTACCCATTGAGCCATTGGACCCGTATTCAAAGAAATATTCGGACTTGAAGATGGAGTTGAGTAAAGCAGAAAGACATATTTTAAAGGAGATGGGTTTCATTTGTCATGTTGAGCATCCTCATAAGTTTATATCAAATTATCTTGCCACTCTGGAGACACCACCAGAATTAACACAAGAAGCCTGGAATCTAGCAAATGACAGTTTGCGTACAACATTGTGTGTGCGATTCAAGAGTGAGGTTGTTGCTTGTGGTGTAGTTTATGCTGCTGCTCGGAGGTTTCAAGTGCCCCTTCCTGAGAATCCGCCATGGTGGAAGGCATTTGATGCTGAAAAATCAGGGATTGACGAAGTTTGTAGGGTGCTGGCTCATCTGTACAGCCTTCCTAAAGCAAAGTACGTACCAGTCTGTAAGGATGGAGATTCTTTTACATTTTCTAACAAATCATGGAATTCACAGTCTCAGCCAAATCCAAAGGAAGTTCCTACGAATAGCCCATCAGCTATTGACAATACCTCTAATATAAAGGCTGCAGCAGAAGTCAATCCTGAATCTGGTGGATCAAAGGGTGTGTTGGCCAAGCTAGCCACGGACAAGCTGAAGGACTCTAAAGAGAGTGATGAAAGTATGCCTATTGAGGGAGAGGCAAAAGAAGATTTCAGTATGAAATCCAAGTCTGAACGCAGAACGGAATCTAGTGGTGATAAAAGCAAGGACAGAGACAGGGAGAGGGAGAGGGAGAGAGACAGAGACAGGGACAGGGATAGGGATAGAATGAAGGTCCGGGATCGTGATAGGGGCAGGGATTCTGACCGGGAACGAGATCGAGAGGAGGCTGAGAGGGACAGAACCAAGGACCGAGGTTATCGTTCCAAGGATAGAGCAAAAGATTCAGGTTGGTTATGGGTTTTAATTTCCCCCCACCACATTGTTAAAATTGGATTTATGAACTTGCGTCATTTCAAATTTTCTCATCTCCGAAATTCTTTTAACTTGAATTTCTATGTTGAATGCACAATATTAATGCAGGGGGCCATTTGGAGAAATCAAGACATCACTCGTCACGAGGTAATGTATATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005911 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0008150 GO:0009506 GO:0009628 GO:0009651 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030054 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0055044 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_N

Protein Analysis

475

Amino Acids

54.96

Weight (kDa)

8.77

Isoelectric Point (pI)

51.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008752)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26430 AT2G26430 AT2G26430 AT2G26430
fragaria_vesca	FvH4_6g04870 FvH4_6g04870
malus_domestica	MD04G1213300.v1.1 MD12G1227500.v1.1
prunus_persica	Prupe.6G333200_v2.0.a1 Prupe.6G333200_v2.0.a1 Prupe.7G087700_v2.0.a1
pyrus_communis	pycom04g18890 pycom12g21230
rosa_chinensis	RchiOBHm_Chr3g0453411
rosa_laevigata	RLG00000025517
rosa_multiflora	Rmu_sc0010297.1_g000002
rosa_roxburghii	Rroxscaffold_6G00430380
rosa_rugosa	Rorug02G0648700
rosa_samantha	Rh3AG051600 Rh3BG053000 Rh3CG052300 Rh3DG053100
rosa_wichuraiana	Rw3G003960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	289
AccB7I	CCANNNNNTGG	1 cut(s)	322
AciI	CCGC	2 cut(s)	135, 647
AclWI	GGATC	2 cut(s)	910, 1137
AcoI	YGGCCR	2 cut(s)	168, 918
AcsI	RAATTY	5 cut(s)	138, 793, 1307, 1324, 1339
AcuI	CTGAAG	1 cut(s)	962
AfaI	GTAC	4 cut(s)	553, 719, 740, 744
AfiI	CCNNNNNNNGG	3 cut(s)	322, 896, 980
AflIII	ACRYGT	1 cut(s)	21
AgsI	TTSAA	8 cut(s)	226, 372, 391, 574, 626, 1306, 1339, 1352
AjnI	CCWGG	2 cut(s)	293, 524
AluBI	AGCT	5 cut(s)	161, 249, 845, 925, 940
AluI	AGCT	5 cut(s)	161, 249, 845, 925, 940
Alw26I	GTCTC	6 cut(s)	86, 491, 807, 1056, 1080, 1086
AlwI	GGATC	2 cut(s)	910, 1137
AlwNI	CAGNNNCTG	1 cut(s)	184
AoxI	GGCC	4 cut(s)	84, 168, 918, 1374
ApeKI	GCWGC	5 cut(s)	242, 608, 611, 872, 875
ApoI	RAATTY	5 cut(s)	138, 793, 1307, 1324, 1339
AseI	ATTAAT	1 cut(s)	1364
AspS9I	GGNCC	4 cut(s)	361, 1123, 1198, 1374
AsuC2I	CCSGG	2 cut(s)	1127, 1157
AsuHPI	GGTGA	2 cut(s)	182, 1055
AsuNHI	GCTAGC	2 cut(s)	245, 925
AvaII	GGWCC	3 cut(s)	361, 1123, 1198
BaeGI	GKGCMC	1 cut(s)	633
BalI	TGGCCA	2 cut(s)	170, 920
BauI	CACGAG	1 cut(s)	1406
BbvI	GCAGC	5 cut(s)	229, 595, 598, 859, 887
BccI	CCATC	5 cut(s)	316, 388, 427, 752, 847
BceAI	ACGGC	3 cut(s)	27, 43, 88
BciT130I	CCWGG	2 cut(s)	295, 526
BcnI	CCSGG	2 cut(s)	1127, 1157
BcoDI	GTCTC	6 cut(s)	86, 491, 807, 1056, 1080, 1086
BfaI	CTAG	4 cut(s)	246, 533, 926, 1038
BfmI	CTRYAG	1 cut(s)	873
BfuAI	ACCTGC	1 cut(s)	289
BisI	GCNGC	5 cut(s)	243, 609, 612, 873, 876
BlsI	GCNGC	5 cut(s)	244, 610, 613, 874, 877
Bme1390I	CCNGG	4 cut(s)	295, 526, 1127, 1157
Bme18I	GGWCC	3 cut(s)	361, 1123, 1198
BmgT120I	GGNCC	4 cut(s)	361, 1123, 1198, 1374
BmiI	GGNNCC	2 cut(s)	363, 1375
BmrFI	CCNGG	4 cut(s)	295, 526, 1127, 1157
BmsI	GCATC	3 cut(s)	272, 466, 658
BmtI	GCTAGC	2 cut(s)	249, 929
BpmI	CTGGAG	2 cut(s)	293, 515
BpuEI	CTTGAG	1 cut(s)	141
BpuMI	CCSGG	2 cut(s)	1127, 1157
BsaAI	YACGTR	1 cut(s)	742
BsaI	GGTCTC	1 cut(s)	86
BsaJI	CCNNGG	6 cut(s)	87, 650, 930, 1194, 1201, 1215
Bsc4I	CCNNNNNNNGG	3 cut(s)	322, 896, 980
Bse1I	ACTGG	3 cut(s)	178, 276, 746
BseBI	CCWGG	2 cut(s)	295, 526
BseDI	CCNNGG	6 cut(s)	87, 650, 930, 1194, 1201, 1215
BseGI	GGATG	3 cut(s)	327, 457, 763
BseLI	CCNNNNNNNGG	3 cut(s)	322, 896, 980
BseMII	CTCAG	5 cut(s)	115, 160, 630, 818, 1170
BseNI	ACTGG	3 cut(s)	178, 276, 746
BseRI	GAGGAG	1 cut(s)	1187
BseSI	GKGCMC	1 cut(s)	633
BseXI	GCAGC	5 cut(s)	229, 595, 598, 859, 887
BshFI	GGCC	4 cut(s)	86, 170, 920, 1376
BsiSI	CCGG	2 cut(s)	1126, 1156
BslFI	GGGAC	2 cut(s)	1112, 1199
BslI	CCNNNNNNNGG	3 cut(s)	322, 896, 980
BsmAI	GTCTC	6 cut(s)	86, 491, 807, 1056, 1080, 1086
BsmFI	GGGAC	2 cut(s)	1112, 1199
BsmI	GAATGC	2 cut(s)	284, 1358
BsnI	GGCC	4 cut(s)	86, 170, 920, 1376
Bso31I	GGTCTC	1 cut(s)	86
Bsp1286I	GDGCHC	1 cut(s)	633
Bsp1407I	TGTACA	1 cut(s)	717
Bsp143I	GATC	3 cut(s)	902, 1129, 1165
Bsp19I	CCATGG	1 cut(s)	650
BspACI	CCGC	2 cut(s)	135, 647
BspANI	GGCC	4 cut(s)	86, 170, 920, 1376
BspCNI	CTCAG	5 cut(s)	114, 159, 631, 817, 1171
BspLI	GGNNCC	2 cut(s)	363, 1375
BspMAI	CTGCAG	1 cut(s)	877
BspMI	ACCTGC	1 cut(s)	289
BspOI	GCTAGC	2 cut(s)	249, 929
BspPI	GGATC	2 cut(s)	910, 1137
BspTNI	GGTCTC	1 cut(s)	86
BsrGI	TGTACA	1 cut(s)	717
BsrI	ACTGG	3 cut(s)	178, 276, 746
BssECI	CCNNGG	6 cut(s)	87, 650, 930, 1194, 1201, 1215
BssMI	GATC	3 cut(s)	902, 1129, 1165
BssSI	CACGAG	1 cut(s)	1406
BssT1I	CCWWGG	3 cut(s)	650, 1194, 1215
Bst2BI	CACGAG	1 cut(s)	1406
Bst2UI	CCWGG	2 cut(s)	295, 526
Bst4CI	ACNGT	2 cut(s)	545, 801
BstAPI	GCANNNNNTGC	1 cut(s)	668
BstAUI	TGTACA	1 cut(s)	717
BstBAI	YACGTR	1 cut(s)	742
BstC8I	GCNNGC	5 cut(s)	220, 247, 261, 708, 927
BstDEI	CTNAG	5 cut(s)	101, 146, 639, 804, 1179
BstDSI	CCRYGG	3 cut(s)	87, 650, 930
BstF5I	GGATG	3 cut(s)	327, 457, 763
BstKTI	GATC	3 cut(s)	905, 1132, 1168
BstMAI	GTCTC	6 cut(s)	86, 491, 807, 1056, 1080, 1086
BstMBI	GATC	3 cut(s)	902, 1129, 1165
BstMWI	GCNNNNNNNGC	4 cut(s)	55, 167, 668, 926
BstNI	CCWGG	2 cut(s)	295, 526
BstSCI	CCNGG	4 cut(s)	293, 524, 1125, 1155
BstSFI	CTRYAG	1 cut(s)	873
BstSLI	GKGCMC	1 cut(s)	633
BstSNI	TACGTA	1 cut(s)	742
BstV1I	GCAGC	5 cut(s)	229, 595, 598, 859, 887
BsuRI	GGCC	4 cut(s)	86, 170, 920, 1376
BtgI	CCRYGG	3 cut(s)	87, 650, 930
BtsCI	GGATG	3 cut(s)	327, 457, 763
BtsIMutI	CAGTG	1 cut(s)	171
BveI	ACCTGC	1 cut(s)	289
Cac8I	GCNNGC	5 cut(s)	220, 247, 261, 708, 927
CaiI	CAGNNNCTG	1 cut(s)	184
Cfr13I	GGNCC	4 cut(s)	361, 1123, 1198, 1374
CseI	GACGC	1 cut(s)	1286
Csp6I	GTAC	4 cut(s)	552, 718, 739, 743
CviAII	CATG	3 cut(s)	449, 651, 789
CviQI	GTAC	4 cut(s)	552, 718, 739, 743
DdeI	CTNAG	5 cut(s)	101, 146, 639, 804, 1179
DpnI	GATC	3 cut(s)	904, 1131, 1167
DpnII	GATC	3 cut(s)	902, 1129, 1165
DraI	TTTAAA	1 cut(s)	426
EaeI	YGGCCR	2 cut(s)	168, 918
EciI	GGCGGA	1 cut(s)	636
Eco105I	TACGTA	1 cut(s)	742
Eco130I	CCWWGG	3 cut(s)	650, 1194, 1215
Eco31I	GGTCTC	1 cut(s)	86
Eco47I	GGWCC	3 cut(s)	361, 1123, 1198
Eco57I	CTGAAG	1 cut(s)	962
EcoRI	GAATTC	1 cut(s)	793
EcoRII	CCWGG	2 cut(s)	293, 524
EcoT14I	CCWWGG	3 cut(s)	650, 1194, 1215
ErhI	CCWWGG	3 cut(s)	650, 1194, 1215
FaeI	CATG	3 cut(s)	452, 654, 792
FalI	AAGNNNNNCTT	4 cut(s)	197, 229, 618, 650
FaqI	GGGAC	2 cut(s)	1112, 1199
FatI	CATG	3 cut(s)	448, 650, 788
Fnu4HI	GCNGC	5 cut(s)	243, 609, 612, 873, 876
FokI	GGATG	3 cut(s)	334, 444, 770
Fsp4HI	GCNGC	5 cut(s)	243, 609, 612, 873, 876
FspBI	CTAG	4 cut(s)	246, 533, 926, 1038
GluI	GCNGC	5 cut(s)	243, 609, 612, 873, 876
GsuI	CTGGAG	2 cut(s)	293, 515
HaeIII	GGCC	4 cut(s)	86, 170, 920, 1376
HapII	CCGG	2 cut(s)	1126, 1156
HgaI	GACGC	1 cut(s)	1286
Hin1II	CATG	3 cut(s)	452, 654, 792
HpaII	CCGG	2 cut(s)	1126, 1156
HphI	GGTGA	2 cut(s)	182, 1055
Hpy188I	TCNGA	8 cut(s)	33, 104, 149, 385, 618, 1021, 1153, 1322
Hpy99I	CGWCG	1 cut(s)	64
HpyAV	CCTTC	5 cut(s)	644, 652, 734, 937, 1114
HpyCH4III	ACNGT	2 cut(s)	545, 801
HpyCH4IV	ACGT	3 cut(s)	23, 228, 741
HpyCH4V	TGCA	6 cut(s)	49, 218, 263, 875, 1356, 1369
HpyF10VI	GCNNNNNNNGC	4 cut(s)	55, 167, 668, 926
HpyF3I	CTNAG	5 cut(s)	101, 146, 639, 804, 1179
HpySE526I	ACGT	3 cut(s)	23, 228, 741
Hsp92II	CATG	3 cut(s)	452, 654, 792
Kzo9I	GATC	3 cut(s)	902, 1129, 1165
Lsp1109I	GCAGC	5 cut(s)	229, 595, 598, 859, 887
LweI	GCATC	3 cut(s)	272, 466, 658
MaeI	CTAG	4 cut(s)	246, 533, 926, 1038
MaeII	ACGT	3 cut(s)	23, 228, 741
MaeIII	GTNAC	1 cut(s)	1403
MalI	GATC	3 cut(s)	904, 1131, 1167
MboI	GATC	3 cut(s)	902, 1129, 1165
MboII	GAAGA	2 cut(s)	403, 1007
MfeI	CAATTG	1 cut(s)	44
MhlI	GDGCHC	1 cut(s)	633
MlsI	TGGCCA	2 cut(s)	170, 920
MluNI	TGGCCA	2 cut(s)	170, 920
MlyI	GAGTC	1 cut(s)	941
Mox20I	TGGCCA	2 cut(s)	170, 920
MscI	TGGCCA	2 cut(s)	170, 920
MseI	TTAA	7 cut(s)	122, 425, 512, 1253, 1275, 1332, 1364
Msp20I	TGGCCA	2 cut(s)	170, 920
MspI	CCGG	2 cut(s)	1126, 1156
MspR9I	CCNGG	4 cut(s)	295, 526, 1127, 1157
MunI	CAATTG	1 cut(s)	44
Mva1269I	GAATGC	2 cut(s)	284, 1358
MvaI	CCWGG	2 cut(s)	295, 526
MwoI	GCNNNNNNNGC	4 cut(s)	55, 167, 668, 926
NciI	CCSGG	2 cut(s)	1127, 1157
NcoI	CCATGG	1 cut(s)	650
NdeII	GATC	3 cut(s)	902, 1129, 1165
NheI	GCTAGC	2 cut(s)	245, 925
NlaIII	CATG	3 cut(s)	452, 654, 792
NlaIV	GGNNCC	2 cut(s)	363, 1375
NmuCI	GTSAC	1 cut(s)	1403
PctI	GAATGC	2 cut(s)	284, 1358
PflMI	CCANNNNNTGG	1 cut(s)	322
PfoI	TCCNGGA	1 cut(s)	1125
PkrI	GCNGC	5 cut(s)	244, 610, 613, 874, 877
PleI	GAGTC	1 cut(s)	941
PpsI	GAGTC	1 cut(s)	941
Ppu21I	YACGTR	1 cut(s)	742
PshBI	ATTAAT	1 cut(s)	1364
Psp6I	CCWGG	2 cut(s)	293, 524
PspGI	CCWGG	2 cut(s)	293, 524
PspN4I	GGNNCC	2 cut(s)	363, 1375
PspPI	GGNCC	4 cut(s)	361, 1123, 1198, 1374
PstI	CTGCAG	1 cut(s)	877
PstNI	CAGNNNCTG	1 cut(s)	184
RsaI	GTAC	4 cut(s)	553, 719, 740, 744
RsaNI	GTAC	4 cut(s)	552, 718, 739, 743
SaqAI	TTAA	7 cut(s)	122, 425, 512, 1253, 1275, 1332, 1364
SatI	GCNGC	5 cut(s)	243, 609, 612, 873, 876
Sau3AI	GATC	3 cut(s)	902, 1129, 1165
Sau96I	GGNCC	4 cut(s)	361, 1123, 1198, 1374
SchI	GAGTC	1 cut(s)	941
ScrFI	CCNGG	4 cut(s)	295, 526, 1127, 1157
SduI	GDGCHC	1 cut(s)	633
SfaNI	GCATC	3 cut(s)	272, 466, 658
SfcI	CTRYAG	1 cut(s)	873
SinI	GGWCC	3 cut(s)	361, 1123, 1198
SmlI	CTYRAG	1 cut(s)	156
SmoI	CTYRAG	1 cut(s)	156
SnaBI	TACGTA	1 cut(s)	742
SsiI	CCGC	2 cut(s)	135, 647
SspI	AATATT	2 cut(s)	380, 1362
SspMI	CTAG	4 cut(s)	246, 533, 926, 1038
StyD4I	CCNGG	4 cut(s)	293, 524, 1125, 1155
StyI	CCWWGG	3 cut(s)	650, 1194, 1215
TaaI	ACNGT	2 cut(s)	545, 801
TaiI	ACGT	3 cut(s)	26, 231, 744
TaqI	TCGA	2 cut(s)	62, 1168
TaqII	GACCGA	2 cut(s)	50, 1215
TatI	WGTACW	1 cut(s)	717
Tru1I	TTAA	7 cut(s)	122, 425, 512, 1253, 1275, 1332, 1364
Tru9I	TTAA	7 cut(s)	122, 425, 512, 1253, 1275, 1332, 1364
TscAI	CASTG	1 cut(s)	178
TseFI	GTSAC	1 cut(s)	1403
TseI	GCWGC	5 cut(s)	242, 608, 611, 872, 875
Tsp45I	GTSAC	1 cut(s)	1403
TspDTI	ATGAA	5 cut(s)	430, 978, 1022, 1133, 1304
TspGWI	ACGGA	3 cut(s)	104, 947, 1046
TspRI	CASTG	1 cut(s)	178
Van91I	CCANNNNNTGG	1 cut(s)	322
VpaK11BI	GGWCC	3 cut(s)	361, 1123, 1198
VspI	ATTAAT	1 cut(s)	1364
XapI	RAATTY	5 cut(s)	138, 793, 1307, 1324, 1339
XcmI	CCANNNNNNNNNTGG	1 cut(s)	355
XspI	CTAG	4 cut(s)	246, 533, 926, 1038

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.