Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0008752

Physical Location & Seq

Genomic Coordinates Reverse (-)

50542048 .. 50545845

Gene Structure 3798 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00430380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGATTTACACGGCGATAGACACGTTCTACCTGAGCGATGACGACCTGGAGAACTCGCCGTCGAGAAAGGACGGCATAGATGAAGCCACAGAGACCACGCTCAGAATCTACGGCTGTGATTTGATTCAAGAAAGCGGCATTCTGCTCAGAATGCCTCAGGCTGTGATGGCCACCGGTCAGGTTCTGTTTCACCGTTTCTATTGCAAGAAGTCTTTTGCTCGCTTCAATGTCAAGAAAGTTGCTGCTAGTTGTCTGTGGCTTGCATCAAAGCTGGAGGAATGTCCTAAGAAAGCTAGACAGGTGATTATTGTTTTCCACAGAATGGAATGTAGGAGGGAGAACTTACCAATTGAGCATTTGGATCCACAATCAAAGAAATATTCAGACTTGAAGATGGAGTTGAGTAGAACAGAGAGACATATTTTGAAAGAGATGGGTTTCATTTGCCATGTTGAGCATCCCCACAAGTTCATTTCGAATTACCTTGCCACTCTTGAATCACCTCCAGAATTAACACAAGAAGCCTGGAATTTAGCAAATGACAGGTGTTTGTTTCTTTACAATTATCTGTTTACCTGGAGATGTTGTCTATCACTCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005911 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0008150 GO:0009506 GO:0009628 GO:0009651 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030054 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0055044 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_N

Protein Analysis

200

Amino Acids

23.48

Weight (kDa)

7.03

Isoelectric Point (pI)

60.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	18 - 147	8.2e-12	Cyclin, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008752)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26430 AT2G26430 AT2G26430 AT2G26430
fragaria_vesca	FvH4_6g04870 FvH4_6g04870
malus_domestica	MD04G1213300.v1.1 MD12G1227500.v1.1
prunus_persica	Prupe.6G333200_v2.0.a1 Prupe.6G333200_v2.0.a1 Prupe.7G087700_v2.0.a1
pyrus_communis	pycom04g18890 pycom12g21230
rosa_chinensis	RchiOBHm_Chr3g0453411
rosa_laevigata	RLG00000025517
rosa_multiflora	Rmu_sc0010297.1_g000002
rosa_roxburghii	Rroxscaffold_6G00430380
rosa_rugosa	Rorug02G0648700
rosa_samantha	Rh3AG051600 Rh3BG053000 Rh3CG052300 Rh3DG053100
rosa_wichuraiana	Rw3G003960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	322
AciI	CCGC	1 cut(s)	135
AclWI	GGATC	2 cut(s)	356, 369
AcoI	YGGCCR	1 cut(s)	168
AcsI	RAATTY	1 cut(s)	529
AfiI	CCNNNNNNNGG	1 cut(s)	322
AflIII	ACRYGT	1 cut(s)	21
AgeI	ACCGGT	1 cut(s)	173
AgsI	TTSAA	5 cut(s)	128, 226, 391, 427, 497
AjnI	CCWGG	3 cut(s)	45, 524, 575
AluBI	AGCT	2 cut(s)	271, 293
AluI	AGCT	2 cut(s)	271, 293
Alw26I	GTCTC	2 cut(s)	86, 409
AlwI	GGATC	2 cut(s)	356, 369
AlwNI	CAGNNNCTG	1 cut(s)	184
AoxI	GGCC	1 cut(s)	168
ApeKI	GCWGC	1 cut(s)	242
ApoI	RAATTY	1 cut(s)	529
AsiGI	ACCGGT	1 cut(s)	173
AsuHPI	GGTGA	3 cut(s)	182, 313, 492
AsuII	TTCGAA	1 cut(s)	476
AxyI	CCTNAGG	1 cut(s)	156
BalI	TGGCCA	1 cut(s)	170
BamHI	GGATCC	1 cut(s)	361
BbvI	GCAGC	1 cut(s)	229
BccI	CCATC	3 cut(s)	160, 388, 427
BceAI	ACGGC	4 cut(s)	27, 43, 88, 127
BciT130I	CCWGG	3 cut(s)	47, 526, 577
BcoDI	GTCTC	2 cut(s)	86, 409
BfaI	CTAG	2 cut(s)	246, 294
BisI	GCNGC	2 cut(s)	136, 243
BlsI	GCNGC	2 cut(s)	137, 244
Bme1390I	CCNGG	3 cut(s)	47, 526, 577
BmiI	GGNNCC	1 cut(s)	363
BmrFI	CCNGG	3 cut(s)	47, 526, 577
BmsI	GCATC	2 cut(s)	272, 466
BpmI	CTGGAG	4 cut(s)	68, 293, 489, 598
Bpu10I	CCTNAGC	1 cut(s)	32
Bpu14I	TTCGAA	1 cut(s)	476
BsaI	GGTCTC	1 cut(s)	86
BsaWI	WCCGGW	1 cut(s)	173
BsaXI	ACNNNNNCTCC	2 cut(s)	571, 601
Bsc4I	CCNNNNNNNGG	1 cut(s)	322
Bse118I	RCCGGY	1 cut(s)	173
Bse21I	CCTNAGG	1 cut(s)	156
BseBI	CCWGG	3 cut(s)	47, 526, 577
BseGI	GGATG	1 cut(s)	457
BseLI	CCNNNNNNNGG	1 cut(s)	322
BseMII	CTCAG	4 cut(s)	23, 115, 160, 170
BseXI	GCAGC	1 cut(s)	229
BshFI	GGCC	1 cut(s)	170
BshTI	ACCGGT	1 cut(s)	173
BsiSI	CCGG	1 cut(s)	174
BslI	CCNNNNNNNGG	1 cut(s)	322
BsmAI	GTCTC	2 cut(s)	86, 409
BsmI	GAATGC	2 cut(s)	138, 156
BsnI	GGCC	1 cut(s)	170
Bso31I	GGTCTC	1 cut(s)	86
Bsp119I	TTCGAA	1 cut(s)	476
Bsp143I	GATC	1 cut(s)	361
BspACI	CCGC	1 cut(s)	135
BspANI	GGCC	1 cut(s)	170
BspCNI	CTCAG	4 cut(s)	24, 114, 159, 169
BspLI	GGNNCC	1 cut(s)	363
BspPI	GGATC	2 cut(s)	356, 369
BspT104I	TTCGAA	1 cut(s)	476
BspTNI	GGTCTC	1 cut(s)	86
BsrFI	RCCGGY	1 cut(s)	173
BssAI	RCCGGY	1 cut(s)	173
BssMI	GATC	1 cut(s)	361
Bst2UI	CCWGG	3 cut(s)	47, 526, 577
Bst4CI	ACNGT	1 cut(s)	194
BstBI	TTCGAA	1 cut(s)	476
BstC8I	GCNNGC	2 cut(s)	220, 261
BstDEI	CTNAG	5 cut(s)	32, 101, 146, 156, 285
BstF5I	GGATG	1 cut(s)	457
BstKTI	GATC	1 cut(s)	364
BstMAI	GTCTC	2 cut(s)	86, 409
BstMBI	GATC	1 cut(s)	361
BstMWI	GCNNNNNNNGC	2 cut(s)	151, 167
BstNI	CCWGG	3 cut(s)	47, 526, 577
BstSCI	CCNGG	3 cut(s)	45, 524, 575
BstV1I	GCAGC	1 cut(s)	229
BstX2I	RGATCY	1 cut(s)	361
BstYI	RGATCY	1 cut(s)	361
Bsu36I	CCTNAGG	1 cut(s)	156
BsuRI	GGCC	1 cut(s)	170
BtgZI	GCGATG	1 cut(s)	51
BtsCI	GGATG	1 cut(s)	457
Cac8I	GCNNGC	2 cut(s)	220, 261
CaiI	CAGNNNCTG	1 cut(s)	184
Cfr10I	RCCGGY	1 cut(s)	173
CspAI	ACCGGT	1 cut(s)	173
CviAII	CATG	1 cut(s)	449
CviJI	RGCY	8 cut(s)	86, 114, 161, 170, 259, 271, 293, 524
CviKI_1	RGCY	8 cut(s)	86, 114, 161, 170, 259, 271, 293, 524
DdeI	CTNAG	5 cut(s)	32, 101, 146, 156, 285
DpnI	GATC	1 cut(s)	363
DpnII	GATC	1 cut(s)	361
EaeI	YGGCCR	1 cut(s)	168
Eco31I	GGTCTC	1 cut(s)	86
Eco81I	CCTNAGG	1 cut(s)	156
EcoRII	CCWGG	3 cut(s)	45, 524, 575
FaeI	CATG	1 cut(s)	452
FaiI	YATR	3 cut(s)	77, 420, 450
FatI	CATG	1 cut(s)	448
Fnu4HI	GCNGC	2 cut(s)	136, 243
FokI	GGATG	1 cut(s)	444
Fsp4HI	GCNGC	2 cut(s)	136, 243
FspBI	CTAG	2 cut(s)	246, 294
GluI	GCNGC	2 cut(s)	136, 243
GsuI	CTGGAG	4 cut(s)	68, 293, 489, 598
HaeIII	GGCC	1 cut(s)	170
HapII	CCGG	1 cut(s)	174
Hin1II	CATG	1 cut(s)	452
HinfI	GANTC	3 cut(s)	105, 124, 497
HpaII	CCGG	1 cut(s)	174
HphI	GGTGA	3 cut(s)	182, 313, 492
Hpy166II	GTNNAC	1 cut(s)	573
Hpy188I	TCNGA	3 cut(s)	104, 149, 385
Hpy188III	TCNNGA	5 cut(s)	63, 128, 232, 494, 506
Hpy8I	GTNNAC	1 cut(s)	573
Hpy99I	CGWCG	1 cut(s)	64
HpyCH4III	ACNGT	1 cut(s)	194
HpyCH4IV	ACGT	1 cut(s)	23
HpyCH4V	TGCA	2 cut(s)	204, 263
HpyF10VI	GCNNNNNNNGC	2 cut(s)	151, 167
HpyF3I	CTNAG	5 cut(s)	32, 101, 146, 156, 285
HpySE526I	ACGT	1 cut(s)	23
Hsp92II	CATG	1 cut(s)	452
Kzo9I	GATC	1 cut(s)	361
Lsp1109I	GCAGC	1 cut(s)	229
LweI	GCATC	2 cut(s)	272, 466
MaeI	CTAG	2 cut(s)	246, 294
MaeII	ACGT	1 cut(s)	23
MalI	GATC	1 cut(s)	363
MboI	GATC	1 cut(s)	361
MboII	GAAGA	2 cut(s)	403, 589
MfeI	CAATTG	1 cut(s)	348
MflI	RGATCY	1 cut(s)	361
MlsI	TGGCCA	1 cut(s)	170
MluCI	AATT	5 cut(s)	348, 478, 509, 529, 562
MluNI	TGGCCA	1 cut(s)	170
MnlI	CCTC	4 cut(s)	165, 268, 327, 513
Mox20I	TGGCCA	1 cut(s)	170
MscI	TGGCCA	1 cut(s)	170
MseI	TTAA	1 cut(s)	512
Msp20I	TGGCCA	1 cut(s)	170
MspI	CCGG	1 cut(s)	174
MspR9I	CCNGG	3 cut(s)	47, 526, 577
MunI	CAATTG	1 cut(s)	348
Mva1269I	GAATGC	2 cut(s)	138, 156
MvaI	CCWGG	3 cut(s)	47, 526, 577
MwoI	GCNNNNNNNGC	2 cut(s)	151, 167
NdeII	GATC	1 cut(s)	361
NlaIII	CATG	1 cut(s)	452
NlaIV	GGNNCC	1 cut(s)	363
NspV	TTCGAA	1 cut(s)	476
PctI	GAATGC	2 cut(s)	138, 156
PfeI	GAWTC	3 cut(s)	105, 124, 497
PflMI	CCANNNNNTGG	1 cut(s)	322
PinAI	ACCGGT	1 cut(s)	173
PkrI	GCNGC	2 cut(s)	137, 244
Psp6I	CCWGG	3 cut(s)	45, 524, 575
PspGI	CCWGG	3 cut(s)	45, 524, 575
PspN4I	GGNNCC	1 cut(s)	363
PstNI	CAGNNNCTG	1 cut(s)	184
PsuI	RGATCY	1 cut(s)	361
SaqAI	TTAA	1 cut(s)	512
SatI	GCNGC	2 cut(s)	136, 243
Sau3AI	GATC	1 cut(s)	361
ScrFI	CCNGG	3 cut(s)	47, 526, 577
SfaNI	GCATC	2 cut(s)	272, 466
SfuI	TTCGAA	1 cut(s)	476
Sse9I	AATT	5 cut(s)	348, 478, 509, 529, 562
SsiI	CCGC	1 cut(s)	135
SspI	AATATT	1 cut(s)	380
SspMI	CTAG	2 cut(s)	246, 294
StyD4I	CCNGG	3 cut(s)	45, 524, 575
TaaI	ACNGT	1 cut(s)	194
TaiI	ACGT	1 cut(s)	26
TaqI	TCGA	2 cut(s)	62, 476
TasI	AATT	5 cut(s)	348, 478, 509, 529, 562
TauI	GCSGC	1 cut(s)	138
TfiI	GAWTC	3 cut(s)	105, 124, 497
Tru1I	TTAA	1 cut(s)	512
Tru9I	TTAA	1 cut(s)	512
TseI	GCWGC	1 cut(s)	242
TspDTI	ATGAA	3 cut(s)	96, 430, 460
Van91I	CCANNNNNTGG	1 cut(s)	322
XapI	RAATTY	1 cut(s)	529
XspI	CTAG	2 cut(s)	246, 294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.