Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0008752

Physical Location & Seq

Genomic Coordinates Forward (+)

12180436 .. 12181857

Gene Structure 1422 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G087700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGATATACAGGGCGATTTTAGACACCTTCTATCTGACCGATGAGCAATTGCACAACTCGCCGTCGAGAAAGGACGGTATAGATGAGGCCACGGAGACCATGCTCAGAATCTATGGCTGTGAGTTAATCCAAGGAAGCGGAATTTTGCTCAAATTACCTCAAGCAGTTATGGCCACTGGTCAGGTTCTGTTTCACCGATTCTATTGTAAGAAGTCGTTTGCAGGCTTCAACGTCAAGAAAGTTGCTGCTAGCTGTTTGTGGCTTGCATCAAAACTGGAGGAGGAATGCCCTAAAAAAGCCAGGCAGGTTATCATTGTTTTCCACAGGGTGGAATGTAGAAGGGAGAACAAGCTAGCAATTGAGCCTTTGGACTTGAATTCAAAGAAATATTCGGACATGAAGACGGAGTTGAGTAGAGCAGAAAGACATATTTTAAAGGAGATGGGTTTCGTTTGTCATGTTGAGCATCCTCATAAGTTTATATCAAATTATCTTGCCACTCTGGAGACATCCACACCGCGGGAATTAACACAAGAAGCCTGGAATCTAGCAAATGACAGTCTGCGTACGACATTGTGTGTGCGATTCAAGAGTGAAGTTGTTGCTTGTGGTGTAGTTTACGCTGCTGCTCGGAGGTTTCGAGTTCCCCTTCCTGAGAATCCGCCATGGTGGAAGGCATTTGATGCTGAGAAATCAGGGATTGACCAAGTTTGTAGGGTGCTGGCTCATCTGTACAGCCTTCCTAAAGCAAACTACATACCAGTCTGTAAGGATGGAGGAGATTCTTCTTTTACTAACAAGTCATGGAATTCAATCTCTCAAGAACCACTTCCAAAGGAAAATAGCCCATCAGCTATTGACGATAAAAGCAAGGAGAGGGAGAAGGAGAGAGACATAGACAGATACAGAAGCATGAGGATAGAGCAGCAAAAGATTAGGGGGCATTTGGAGAAATCAAGACATCACAGAGATCGTGACTATCACAATTCCTCCTCTTCTTCACGGGATGAGGATCTCCATAGACATCATTCCTACGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005911 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0008150 GO:0009506 GO:0009628 GO:0009651 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030054 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0055044 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_N

Protein Analysis

347

Amino Acids

40.05

Weight (kDa)

8.88

Isoelectric Point (pI)

53.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008752)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26430 AT2G26430 AT2G26430 AT2G26430
fragaria_vesca	FvH4_6g04870 FvH4_6g04870
malus_domestica	MD04G1213300.v1.1 MD12G1227500.v1.1
prunus_persica	Prupe.6G333200_v2.0.a1 Prupe.6G333200_v2.0.a1 Prupe.7G087700_v2.0.a1
pyrus_communis	pycom04g18890 pycom12g21230
rosa_chinensis	RchiOBHm_Chr3g0453411
rosa_laevigata	RLG00000025517
rosa_multiflora	Rmu_sc0010297.1_g000002
rosa_roxburghii	Rroxscaffold_6G00430380
rosa_rugosa	Rorug02G0648700
rosa_samantha	Rh3AG051600 Rh3BG053000 Rh3CG052300 Rh3DG053100
rosa_wichuraiana	Rw3G003960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	295
AccB7I	CCANNNNNTGG	1 cut(s)	328
AccII	CGCG	1 cut(s)	520
AciI	CCGC	4 cut(s)	138, 518, 520, 662
AclWI	GGATC	1 cut(s)	1020
AcoI	YGGCCR	1 cut(s)	171
AcsI	RAATTY	3 cut(s)	141, 376, 808
AdeI	CACNNNGTG	1 cut(s)	328
AfaI	GTAC	2 cut(s)	568, 734
AfiI	CCNNNNNNNGG	2 cut(s)	328, 519
AgsI	TTSAA	5 cut(s)	229, 376, 381, 589, 813
AjnI	CCWGG	2 cut(s)	299, 539
AluBI	AGCT	3 cut(s)	252, 352, 854
AluI	AGCT	3 cut(s)	252, 352, 854
Alw26I	GTCTC	3 cut(s)	89, 500, 885
AlwI	GGATC	1 cut(s)	1020
AlwNI	CAGNNNCTG	1 cut(s)	187
AoxI	GGCC	2 cut(s)	87, 171
ApeKI	GCWGC	4 cut(s)	245, 623, 626, 925
ApoI	RAATTY	3 cut(s)	141, 376, 808
Asp700I	GAANNNNTTC	1 cut(s)	828
AsuHPI	GGTGA	1 cut(s)	185
AsuNHI	GCTAGC	2 cut(s)	248, 352
BalI	TGGCCA	1 cut(s)	173
BbsI	GAAGAC	1 cut(s)	407
BbvI	GCAGC	4 cut(s)	232, 610, 613, 937
BccI	CCATC	3 cut(s)	436, 767, 856
BceAI	ACGGC	1 cut(s)	46
BciT130I	CCWGG	2 cut(s)	301, 541
BcoDI	GTCTC	3 cut(s)	89, 500, 885
BfaI	CTAG	3 cut(s)	249, 353, 548
BfuAI	ACCTGC	1 cut(s)	295
BisI	GCNGC	4 cut(s)	246, 624, 627, 926
BlsI	GCNGC	4 cut(s)	247, 625, 628, 927
Bme1390I	CCNGG	2 cut(s)	301, 541
BmrFI	CCNGG	2 cut(s)	301, 541
BmsI	GCATC	3 cut(s)	275, 475, 673
BmtI	GCTAGC	2 cut(s)	252, 356
BpiI	GAAGAC	1 cut(s)	407
BpmI	CTGGAG	2 cut(s)	296, 524
BpuEI	CTTGAG	2 cut(s)	144, 804
BsaBI	GATNNNNATC	1 cut(s)	1011
BsaI	GGTCTC	1 cut(s)	89
BsaJI	CCNNGG	4 cut(s)	90, 130, 518, 665
BsaXI	ACNNNNNCTCC	2 cut(s)	974, 1004
Bsc4I	CCNNNNNNNGG	2 cut(s)	328, 519
Bse1I	ACTGG	3 cut(s)	181, 279, 761
Bse8I	GATNNNNATC	1 cut(s)	1011
BseBI	CCWGG	2 cut(s)	301, 541
BseDI	CCNNGG	4 cut(s)	90, 130, 518, 665
BseGI	GGATG	4 cut(s)	466, 509, 778, 1012
BseJI	GATNNNNATC	1 cut(s)	1011
BseLI	CCNNNNNNNGG	2 cut(s)	328, 519
BseMII	CTCAG	3 cut(s)	118, 645, 678
BseNI	ACTGG	3 cut(s)	181, 279, 761
BseRI	GAGGAG	3 cut(s)	293, 792, 982
BseXI	GCAGC	4 cut(s)	232, 610, 613, 937
Bsh1236I	CGCG	1 cut(s)	520
BshFI	GGCC	2 cut(s)	89, 173
BsiWI	CGTACG	1 cut(s)	566
BslI	CCNNNNNNNGG	2 cut(s)	328, 519
BsmAI	GTCTC	3 cut(s)	89, 500, 885
BsmI	GAATGC	1 cut(s)	290
BsnI	GGCC	2 cut(s)	89, 173
Bso31I	GGTCTC	1 cut(s)	89
Bsp1407I	TGTACA	1 cut(s)	732
Bsp143I	GATC	2 cut(s)	970, 1012
Bsp19I	CCATGG	1 cut(s)	665
BspACI	CCGC	4 cut(s)	138, 518, 520, 662
BspANI	GGCC	2 cut(s)	89, 173
BspCNI	CTCAG	3 cut(s)	117, 646, 679
BspFNI	CGCG	1 cut(s)	520
BspMI	ACCTGC	1 cut(s)	295
BspOI	GCTAGC	2 cut(s)	252, 356
BspPI	GGATC	1 cut(s)	1020
BspTNI	GGTCTC	1 cut(s)	89
BsrGI	TGTACA	1 cut(s)	732
BsrI	ACTGG	3 cut(s)	181, 279, 761
BssECI	CCNNGG	4 cut(s)	90, 130, 518, 665
BssMI	GATC	2 cut(s)	970, 1012
BssT1I	CCWWGG	2 cut(s)	130, 665
Bst2UI	CCWGG	2 cut(s)	301, 541
Bst4CI	ACNGT	2 cut(s)	77, 560
Bst6I	CTCTTC	1 cut(s)	1000
BstAPI	GCANNNNNTGC	1 cut(s)	683
BstAUI	TGTACA	1 cut(s)	732
BstC8I	GCNNGC	5 cut(s)	223, 250, 264, 354, 723
BstDEI	CTNAG	3 cut(s)	104, 654, 687
BstDSI	CCRYGG	3 cut(s)	90, 518, 665
BstF5I	GGATG	4 cut(s)	466, 509, 778, 1012
BstFNI	CGCG	1 cut(s)	520
BstKTI	GATC	2 cut(s)	973, 1015
BstMAI	GTCTC	3 cut(s)	89, 500, 885
BstMBI	GATC	2 cut(s)	970, 1012
BstMWI	GCNNNNNNNGC	3 cut(s)	58, 170, 683
BstNI	CCWGG	2 cut(s)	301, 541
BstSCI	CCNGG	2 cut(s)	299, 539
BstUI	CGCG	1 cut(s)	520
BstV1I	GCAGC	4 cut(s)	232, 610, 613, 937
BstV2I	GAAGAC	1 cut(s)	407
BstX2I	RGATCY	1 cut(s)	1012
BstYI	RGATCY	1 cut(s)	1012
BsuRI	GGCC	2 cut(s)	89, 173
BtgI	CCRYGG	3 cut(s)	90, 518, 665
BtsCI	GGATG	4 cut(s)	466, 509, 778, 1012
BtsIMutI	CAGTG	1 cut(s)	174
BveI	ACCTGC	1 cut(s)	295
Cac8I	GCNNGC	5 cut(s)	223, 250, 264, 354, 723
CaiI	CAGNNNCTG	1 cut(s)	187
Cfr42I	CCGCGG	1 cut(s)	521
Csp6I	GTAC	2 cut(s)	567, 733
CviAII	CATG	6 cut(s)	100, 397, 458, 666, 804, 913
CviQI	GTAC	2 cut(s)	567, 733
DdeI	CTNAG	3 cut(s)	104, 654, 687
DpnI	GATC	2 cut(s)	972, 1014
DpnII	GATC	2 cut(s)	970, 1012
DraI	TTTAAA	1 cut(s)	435
DraIII	CACNNNGTG	1 cut(s)	328
EaeI	YGGCCR	1 cut(s)	171
Eam1104I	CTCTTC	1 cut(s)	1000
EarI	CTCTTC	1 cut(s)	1000
EciI	GGCGGA	1 cut(s)	651
Eco130I	CCWWGG	2 cut(s)	130, 665
Eco31I	GGTCTC	1 cut(s)	89
EcoRI	GAATTC	2 cut(s)	376, 808
EcoRII	CCWGG	2 cut(s)	299, 539
EcoT14I	CCWWGG	2 cut(s)	130, 665
ErhI	CCWWGG	2 cut(s)	130, 665
FaeI	CATG	6 cut(s)	103, 400, 461, 669, 807, 916
FalI	AAGNNNNNCTT	2 cut(s)	813, 845
FatI	CATG	6 cut(s)	99, 396, 457, 665, 803, 912
FauI	CCCGC	1 cut(s)	513
Fnu4HI	GCNGC	4 cut(s)	246, 624, 627, 926
FokI	GGATG	4 cut(s)	453, 496, 785, 1019
Fsp4HI	GCNGC	4 cut(s)	246, 624, 627, 926
FspBI	CTAG	3 cut(s)	249, 353, 548
GluI	GCNGC	4 cut(s)	246, 624, 627, 926
GsuI	CTGGAG	2 cut(s)	296, 524
HaeIII	GGCC	2 cut(s)	89, 173
Hin1II	CATG	6 cut(s)	103, 400, 461, 669, 807, 916
HinfI	GANTC	6 cut(s)	108, 198, 544, 585, 658, 782
HphI	GGTGA	1 cut(s)	185
Hpy166II	GTNNAC	1 cut(s)	619
Hpy188I	TCNGA	4 cut(s)	36, 107, 394, 633
Hpy188III	TCNNGA	8 cut(s)	66, 235, 503, 589, 653, 821, 957, 974
Hpy8I	GTNNAC	1 cut(s)	619
Hpy99I	CGWCG	1 cut(s)	67
HpyAV	CCTTC	6 cut(s)	37, 333, 659, 667, 749, 877
HpyCH4III	ACNGT	2 cut(s)	77, 560
HpyCH4IV	ACGT	2 cut(s)	231, 1035
HpyCH4V	TGCA	3 cut(s)	52, 221, 266
HpyF10VI	GCNNNNNNNGC	3 cut(s)	58, 170, 683
HpyF3I	CTNAG	3 cut(s)	104, 654, 687
HpySE526I	ACGT	2 cut(s)	231, 1035
Hsp92II	CATG	6 cut(s)	103, 400, 461, 669, 807, 916
KspI	CCGCGG	1 cut(s)	521
Kzo9I	GATC	2 cut(s)	970, 1012
Lsp1109I	GCAGC	4 cut(s)	232, 610, 613, 937
LweI	GCATC	3 cut(s)	275, 475, 673
MaeI	CTAG	3 cut(s)	249, 353, 548
MaeII	ACGT	2 cut(s)	231, 1035
MaeIII	GTNAC	1 cut(s)	974
MalI	GATC	2 cut(s)	972, 1014
MboI	GATC	2 cut(s)	970, 1012
MboII	GAAGA	4 cut(s)	412, 777, 987, 990
MfeI	CAATTG	2 cut(s)	47, 357
MflI	RGATCY	1 cut(s)	1012
MlsI	TGGCCA	1 cut(s)	173
MluCI	AATT	9 cut(s)	47, 141, 152, 357, 376, 487, 524, 808, 985
MluNI	TGGCCA	1 cut(s)	173
Mox20I	TGGCCA	1 cut(s)	173
MroXI	GAANNNNTTC	1 cut(s)	828
MscI	TGGCCA	1 cut(s)	173
MseI	TTAA	3 cut(s)	125, 434, 527
Msp20I	TGGCCA	1 cut(s)	173
MspA1I	CMGCKG	1 cut(s)	520
MspR9I	CCNGG	2 cut(s)	301, 541
MunI	CAATTG	2 cut(s)	47, 357
Mva1269I	GAATGC	1 cut(s)	290
MvaI	CCWGG	2 cut(s)	301, 541
MvnI	CGCG	1 cut(s)	520
MwoI	GCNNNNNNNGC	3 cut(s)	58, 170, 683
NcoI	CCATGG	1 cut(s)	665
NdeII	GATC	2 cut(s)	970, 1012
NheI	GCTAGC	2 cut(s)	248, 352
NlaIII	CATG	6 cut(s)	103, 400, 461, 669, 807, 916
NmuCI	GTSAC	1 cut(s)	974
PcsI	WCGNNNNNNNCGW	1 cut(s)	637
PctI	GAATGC	1 cut(s)	290
PdmI	GAANNNNTTC	1 cut(s)	828
PfeI	GAWTC	6 cut(s)	108, 198, 544, 585, 658, 782
Pfl23II	CGTACG	1 cut(s)	566
PflMI	CCANNNNNTGG	1 cut(s)	328
PkrI	GCNGC	4 cut(s)	247, 625, 628, 927
Psp6I	CCWGG	2 cut(s)	299, 539
PspGI	CCWGG	2 cut(s)	299, 539
PspLI	CGTACG	1 cut(s)	566
PstNI	CAGNNNCTG	1 cut(s)	187
PsuI	RGATCY	1 cut(s)	1012
RsaI	GTAC	2 cut(s)	568, 734
RsaNI	GTAC	2 cut(s)	567, 733
SacII	CCGCGG	1 cut(s)	521
SaqAI	TTAA	3 cut(s)	125, 434, 527
SatI	GCNGC	4 cut(s)	246, 624, 627, 926
Sau3AI	GATC	2 cut(s)	970, 1012
ScrFI	CCNGG	2 cut(s)	301, 541
SfaNI	GCATC	3 cut(s)	275, 475, 673
Sfr303I	CCGCGG	1 cut(s)	521
SgrBI	CCGCGG	1 cut(s)	521
SmlI	CTYRAG	2 cut(s)	159, 819
SmoI	CTYRAG	2 cut(s)	159, 819
Sse9I	AATT	9 cut(s)	47, 141, 152, 357, 376, 487, 524, 808, 985
SsiI	CCGC	4 cut(s)	138, 518, 520, 662
SspI	AATATT	1 cut(s)	389
SspMI	CTAG	3 cut(s)	249, 353, 548
StyD4I	CCNGG	2 cut(s)	299, 539
StyI	CCWWGG	2 cut(s)	130, 665
TaaI	ACNGT	2 cut(s)	77, 560
TaiI	ACGT	2 cut(s)	234, 1038
TaqI	TCGA	2 cut(s)	65, 640
TaqII	GACCGA	1 cut(s)	53
TasI	AATT	9 cut(s)	47, 141, 152, 357, 376, 487, 524, 808, 985
TatI	WGTACW	1 cut(s)	732
TfiI	GAWTC	6 cut(s)	108, 198, 544, 585, 658, 782
Tru1I	TTAA	3 cut(s)	125, 434, 527
Tru9I	TTAA	3 cut(s)	125, 434, 527
TscAI	CASTG	1 cut(s)	181
TseFI	GTSAC	1 cut(s)	974
TseI	GCWGC	4 cut(s)	245, 623, 626, 925
Tsp45I	GTSAC	1 cut(s)	974
TspDTI	ATGAA	1 cut(s)	413
TspGWI	ACGGA	2 cut(s)	107, 419
TspRI	CASTG	1 cut(s)	181
Van91I	CCANNNNNTGG	1 cut(s)	328
XapI	RAATTY	3 cut(s)	141, 376, 808
XmnI	GAANNNNTTC	1 cut(s)	828
XspI	CTAG	3 cut(s)	249, 353, 548

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.