Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0008752

Physical Location & Seq

Genomic Coordinates Forward (+)

46371335 .. 46375050

Gene Structure 3716 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025517

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

ATGATTTACACGGCGATAGACACGTTCTACCTGAGCGATGACGACCTGGAGAACTCGCCGTCGAGAAAGGACGGCATAGATGAAGCCACAGAGACCACGCTCAGAATCTACGGCTGTGATTTGATTCAAGAAAGCGGCATTCTGCTCAGAATGCCTCAGGCTGTGATGGCCACCGGTCAGGTTCTGTTTCACCGTTTCTATTGCAAGAAGTCTTTTGCTCGCTTCAATGTCAAGAAAGTTGCTGCTAGTTGTCTGTGGCTTGCATCAAAGCTGGAGGAATGTCCTAAGAAAGCTAGACAGGTGATTATTGTTTTCCACAGAATGGAATGTAGGAGGGAGAACTTACCAATTGAGCATTTGGATCCACAATCAAAGAAATATTCAGACTTGAAGATGGAGTTGAGTAGAACAGAGAGACATATTTTGAAAGAGATGGGTTTCATTTGCCATGTTGAGCATCCCCACAAGTTCATTTCGAATTACCTTGCTACTCTTGAATCACCTCCAGAATTAACACAAGAAGCCTGGAATTTAGCAAATGACAGTTTGCGTACAACTTTGTGTGTTCGATTCAAGAGTGAGGTTGTTGCTTGTGGTGTTGTGTATGCTGCTGCTCGGAGGTTTCGTGTCCCCCTTCCTGAGAATCCCCCGTGGTGGAAGGCATTTGATGCTGACAAATCAGGGATTGATGAGGTTTGTAGGGTTCTGGCTCATCTGTATAGTCTTCCTAAAGCTCAGTATATTCCAGTCTGTAAGGATGGAGATTCATTTACATTTTCTAGCAACAAATGGAATTCACAGTCCCAGCCAGTTTCAAAGGAAGTTCCTAAGAGTAGCCCACCAACTATCACCGATACATCTAATTCAAAGGCACTGACAGCAGCAGTCAATCCTGAATCTTCTGAATCAAAGGGTGCAAGCAAAGCAGCAATCGATAAGGTAAAGGATTCTAAAGAAAGTGATGATGAATCTAAGAGCATGCCTGTTGATTTAGAGGGAAGAGAAGATTTGAATATAAAATCCAAAGCTGAACGCAGCAAAAGCAGGGACAGGGAGAGGGATAGAGAGAGGGAGAGAGACAGGGACAGGGACAGGGATAGAATAAAGGTCCGAGATCGTGAGCGGGGAGATCGAGAGGAAGCTGAGAGGGATAGAACCAAGGACCGGGGTCATCGTTCTAAGGACAGAGCAAAAGATTCAGGCGGGCATTCCGAGAAATCAAGACATTACTCATCACGAGATCGTGACTATCACAGTTCCTCGTATTCTTCAAGGGAGAAGGATCGCTATAGACATCACCCCTATGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005911 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0008150 GO:0009506 GO:0009628 GO:0009651 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030054 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0055044 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_N

Protein Analysis

437

Amino Acids

50.31

Weight (kDa)

8.81

Isoelectric Point (pI)

56.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	18 - 147	5.4e-11	Cyclin, N-terminal domain
CycT2-like_C	PF21797	153 - 225	4.2e-08	Cyclin-T2-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008752)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26430 AT2G26430 AT2G26430 AT2G26430
fragaria_vesca	FvH4_6g04870 FvH4_6g04870
malus_domestica	MD04G1213300.v1.1 MD12G1227500.v1.1
prunus_persica	Prupe.6G333200_v2.0.a1 Prupe.6G333200_v2.0.a1 Prupe.7G087700_v2.0.a1
pyrus_communis	pycom04g18890 pycom12g21230
rosa_chinensis	RchiOBHm_Chr3g0453411
rosa_laevigata	RLG00000025517
rosa_multiflora	Rmu_sc0010297.1_g000002
rosa_roxburghii	Rroxscaffold_6G00430380
rosa_rugosa	Rorug02G0648700
rosa_samantha	Rh3AG051600 Rh3BG053000 Rh3CG052300 Rh3DG053100
rosa_wichuraiana	Rw3G003960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	322
AccBSI	CCGCTC	1 cut(s)	1123
AciI	CCGC	3 cut(s)	135, 1123, 1203
AclWI	GGATC	3 cut(s)	356, 369, 1290
AcoI	YGGCCR	1 cut(s)	168
AcsI	RAATTY	2 cut(s)	529, 793
AfaI	GTAC	1 cut(s)	553
AfiI	CCNNNNNNNGG	3 cut(s)	322, 654, 1164
AflIII	ACRYGT	1 cut(s)	21
AgeI	ACCGGT	1 cut(s)	173
AjnI	CCWGG	2 cut(s)	45, 524
AluBI	AGCT	5 cut(s)	271, 293, 734, 1028, 1142
AluI	AGCT	5 cut(s)	271, 293, 734, 1028, 1142
Alw26I	GTCTC	3 cut(s)	86, 409, 1071
AlwI	GGATC	3 cut(s)	356, 369, 1290
AlwNI	CAGNNNCTG	1 cut(s)	184
AoxI	GGCC	1 cut(s)	168
ApeKI	GCWGC	6 cut(s)	242, 608, 611, 881, 926, 1035
ApoI	RAATTY	2 cut(s)	529, 793
AsiGI	ACCGGT	1 cut(s)	173
AspS9I	GGNCC	2 cut(s)	1108, 1162
AsuC2I	CCSGG	1 cut(s)	1166
AsuHPI	GGTGA	5 cut(s)	182, 313, 492, 841, 1289
AsuII	TTCGAA	1 cut(s)	476
AvaII	GGWCC	2 cut(s)	1108, 1162
AxyI	CCTNAGG	1 cut(s)	156
BalI	TGGCCA	1 cut(s)	170
BamHI	GGATCC	1 cut(s)	361
BauI	CACGAG	1 cut(s)	1236
BbsI	GAAGAC	1 cut(s)	716
BbvI	GCAGC	6 cut(s)	229, 595, 598, 893, 938, 1047
BccI	CCATC	4 cut(s)	160, 388, 427, 752
BceAI	ACGGC	4 cut(s)	27, 43, 88, 127
BciT130I	CCWGG	2 cut(s)	47, 526
BcnI	CCSGG	1 cut(s)	1166
BcoDI	GTCTC	3 cut(s)	86, 409, 1071
BfaI	CTAG	3 cut(s)	246, 294, 780
BfmI	CTRYAG	1 cut(s)	1288
BisI	GCNGC	7 cut(s)	136, 243, 609, 612, 882, 927, 1036
BlsI	GCNGC	7 cut(s)	137, 244, 610, 613, 883, 928, 1037
Bme1390I	CCNGG	3 cut(s)	47, 526, 1166
Bme18I	GGWCC	2 cut(s)	1108, 1162
BmgT120I	GGNCC	2 cut(s)	1108, 1162
BmiI	GGNNCC	1 cut(s)	363
BmrFI	CCNGG	3 cut(s)	47, 526, 1166
BmsI	GCATC	3 cut(s)	272, 466, 658
BoxI	GACNNNNGTC	1 cut(s)	1167
BpiI	GAAGAC	1 cut(s)	716
BpmI	CTGGAG	3 cut(s)	68, 293, 489
Bpu10I	CCTNAGC	1 cut(s)	32
Bpu14I	TTCGAA	1 cut(s)	476
BpuMI	CCSGG	1 cut(s)	1166
Bsa29I	ATCGAT	1 cut(s)	933
BsaI	GGTCTC	1 cut(s)	86
BsaJI	CCNNGG	3 cut(s)	650, 1158, 1165
BsaWI	WCCGGW	1 cut(s)	173
BsaXI	ACNNNNNCTCC	2 cut(s)	610, 640
Bsc4I	CCNNNNNNNGG	3 cut(s)	322, 654, 1164
Bse118I	RCCGGY	1 cut(s)	173
Bse1I	ACTGG	2 cut(s)	746, 809
Bse21I	CCTNAGG	1 cut(s)	156
BseBI	CCWGG	2 cut(s)	47, 526
BseCI	ATCGAT	1 cut(s)	933
BseDI	CCNNGG	3 cut(s)	650, 1158, 1165
BseGI	GGATG	2 cut(s)	457, 763
BseLI	CCNNNNNNNGG	3 cut(s)	322, 654, 1164
BseMII	CTCAG	7 cut(s)	23, 115, 160, 170, 630, 749, 1134
BseNI	ACTGG	2 cut(s)	746, 809
BseXI	GCAGC	6 cut(s)	229, 595, 598, 893, 938, 1047
BseYI	CCCAGC	1 cut(s)	804
BshFI	GGCC	1 cut(s)	170
BshTI	ACCGGT	1 cut(s)	173
BshVI	ATCGAT	1 cut(s)	933
BsiSI	CCGG	2 cut(s)	174, 1165
BslFI	GGGAC	5 cut(s)	614, 787, 1061, 1097, 1103
BslI	CCNNNNNNNGG	3 cut(s)	322, 654, 1164
BsmAI	GTCTC	3 cut(s)	86, 409, 1071
BsmFI	GGGAC	5 cut(s)	614, 787, 1061, 1097, 1103
BsmI	GAATGC	3 cut(s)	138, 156, 1207
BsnI	GGCC	1 cut(s)	170
Bso31I	GGTCTC	1 cut(s)	86
Bsp119I	TTCGAA	1 cut(s)	476
Bsp143I	GATC	5 cut(s)	361, 1114, 1129, 1240, 1282
BspACI	CCGC	3 cut(s)	135, 1123, 1203
BspANI	GGCC	1 cut(s)	170
BspCNI	CTCAG	7 cut(s)	24, 114, 159, 169, 631, 748, 1135
BspDI	ATCGAT	1 cut(s)	933
BspLI	GGNNCC	1 cut(s)	363
BspPI	GGATC	3 cut(s)	356, 369, 1290
BspT104I	TTCGAA	1 cut(s)	476
BspTNI	GGTCTC	1 cut(s)	86
BsrBI	CCGCTC	1 cut(s)	1123
BsrFI	RCCGGY	1 cut(s)	173
BsrI	ACTGG	2 cut(s)	746, 809
BssAI	RCCGGY	1 cut(s)	173
BssECI	CCNNGG	3 cut(s)	650, 1158, 1165
BssMI	GATC	5 cut(s)	361, 1114, 1129, 1240, 1282
BssSI	CACGAG	1 cut(s)	1236
BssT1I	CCWWGG	1 cut(s)	1158
Bst2BI	CACGAG	1 cut(s)	1236
Bst2UI	CCWGG	2 cut(s)	47, 526
Bst4CI	ACNGT	4 cut(s)	194, 545, 801, 1256
Bst6I	CTCTTC	1 cut(s)	994
BstAPI	GCANNNNNTGC	1 cut(s)	668
BstBI	TTCGAA	1 cut(s)	476
BstC8I	GCNNGC	5 cut(s)	220, 261, 919, 980, 1205
BstDSI	CCRYGG	1 cut(s)	650
BstF5I	GGATG	2 cut(s)	457, 763
BstKTI	GATC	5 cut(s)	364, 1117, 1132, 1243, 1285
BstMAI	GTCTC	3 cut(s)	86, 409, 1071
BstMBI	GATC	5 cut(s)	361, 1114, 1129, 1240, 1282
BstMWI	GCNNNNNNNGC	6 cut(s)	151, 167, 668, 878, 923, 1041
BstNI	CCWGG	2 cut(s)	47, 526
BstNSI	RCATGY	1 cut(s)	982
BstPAI	GACNNNNGTC	1 cut(s)	1167
BstSCI	CCNGG	3 cut(s)	45, 524, 1164
BstSFI	CTRYAG	1 cut(s)	1288
BstV1I	GCAGC	6 cut(s)	229, 595, 598, 893, 938, 1047
BstV2I	GAAGAC	1 cut(s)	716
BstX2I	RGATCY	1 cut(s)	361
BstYI	RGATCY	1 cut(s)	361
Bsu15I	ATCGAT	1 cut(s)	933
Bsu36I	CCTNAGG	1 cut(s)	156
BsuRI	GGCC	1 cut(s)	170
BsuTUI	ATCGAT	1 cut(s)	933
BtgI	CCRYGG	1 cut(s)	650
BtgZI	GCGATG	1 cut(s)	51
BtsCI	GGATG	2 cut(s)	457, 763
BtsIMutI	CAGTG	1 cut(s)	872
Cac8I	GCNNGC	5 cut(s)	220, 261, 919, 980, 1205
CaiI	CAGNNNCTG	1 cut(s)	184
Cfr10I	RCCGGY	1 cut(s)	173
Cfr13I	GGNCC	2 cut(s)	1108, 1162
ClaI	ATCGAT	1 cut(s)	933
Csp6I	GTAC	1 cut(s)	552
CspAI	ACCGGT	1 cut(s)	173
CviAII	CATG	2 cut(s)	449, 979
CviQI	GTAC	1 cut(s)	552
DpnI	GATC	5 cut(s)	363, 1116, 1131, 1242, 1284
DpnII	GATC	5 cut(s)	361, 1114, 1129, 1240, 1282
EaeI	YGGCCR	1 cut(s)	168
Eam1104I	CTCTTC	1 cut(s)	994
EarI	CTCTTC	1 cut(s)	994
Eco130I	CCWWGG	1 cut(s)	1158
Eco31I	GGTCTC	1 cut(s)	86
Eco47I	GGWCC	2 cut(s)	1108, 1162
Eco81I	CCTNAGG	1 cut(s)	156
EcoRI	GAATTC	1 cut(s)	793
EcoRII	CCWGG	2 cut(s)	45, 524
EcoT14I	CCWWGG	1 cut(s)	1158
ErhI	CCWWGG	1 cut(s)	1158
FaeI	CATG	2 cut(s)	452, 982
FaqI	GGGAC	5 cut(s)	614, 787, 1061, 1097, 1103
FatI	CATG	2 cut(s)	448, 978
FauI	CCCGC	2 cut(s)	1116, 1196
Fnu4HI	GCNGC	7 cut(s)	136, 243, 609, 612, 882, 927, 1036
FokI	GGATG	2 cut(s)	444, 770
Fsp4HI	GCNGC	7 cut(s)	136, 243, 609, 612, 882, 927, 1036
FspBI	CTAG	3 cut(s)	246, 294, 780
GluI	GCNGC	7 cut(s)	136, 243, 609, 612, 882, 927, 1036
GsaI	CCCAGC	1 cut(s)	808
GsuI	CTGGAG	3 cut(s)	68, 293, 489
HaeIII	GGCC	1 cut(s)	170
HapII	CCGG	2 cut(s)	174, 1165
Hin1II	CATG	2 cut(s)	452, 982
HpaII	CCGG	2 cut(s)	174, 1165
HphI	GGTGA	5 cut(s)	182, 313, 492, 841, 1289
Hpy188I	TCNGA	7 cut(s)	104, 149, 385, 618, 904, 1112, 1213
Hpy99I	CGWCG	1 cut(s)	64
HpyAV	CCTTC	3 cut(s)	644, 652, 1273
HpyCH4III	ACNGT	4 cut(s)	194, 545, 801, 1256
HpyCH4IV	ACGT	1 cut(s)	23
HpyCH4V	TGCA	3 cut(s)	204, 263, 917
HpyF10VI	GCNNNNNNNGC	6 cut(s)	151, 167, 668, 878, 923, 1041
HpySE526I	ACGT	1 cut(s)	23
Hsp92II	CATG	2 cut(s)	452, 982
Kzo9I	GATC	5 cut(s)	361, 1114, 1129, 1240, 1282
Lsp1109I	GCAGC	6 cut(s)	229, 595, 598, 893, 938, 1047
LweI	GCATC	3 cut(s)	272, 466, 658
MaeI	CTAG	3 cut(s)	246, 294, 780
MaeII	ACGT	1 cut(s)	23
MaeIII	GTNAC	1 cut(s)	1244
MalI	GATC	5 cut(s)	363, 1116, 1131, 1242, 1284
MbiI	CCGCTC	1 cut(s)	1123
MboI	GATC	5 cut(s)	361, 1114, 1129, 1240, 1282
MboII	GAAGA	6 cut(s)	403, 716, 891, 1011, 1016, 1260
MfeI	CAATTG	1 cut(s)	348
MflI	RGATCY	1 cut(s)	361
MlsI	TGGCCA	1 cut(s)	170
MluCI	AATT	6 cut(s)	348, 478, 509, 529, 793, 862
MluNI	TGGCCA	1 cut(s)	170
Mox20I	TGGCCA	1 cut(s)	170
MscI	TGGCCA	1 cut(s)	170
MseI	TTAA	1 cut(s)	512
MslI	CAYNNNNRTG	1 cut(s)	1302
Msp20I	TGGCCA	1 cut(s)	170
MspI	CCGG	2 cut(s)	174, 1165
MspR9I	CCNGG	3 cut(s)	47, 526, 1166
MunI	CAATTG	1 cut(s)	348
Mva1269I	GAATGC	3 cut(s)	138, 156, 1207
MvaI	CCWGG	2 cut(s)	47, 526
MwoI	GCNNNNNNNGC	6 cut(s)	151, 167, 668, 878, 923, 1041
NciI	CCSGG	1 cut(s)	1166
NdeII	GATC	5 cut(s)	361, 1114, 1129, 1240, 1282
NlaIII	CATG	2 cut(s)	452, 982
NlaIV	GGNNCC	1 cut(s)	363
NmuCI	GTSAC	1 cut(s)	1244
NspI	RCATGY	1 cut(s)	982
NspV	TTCGAA	1 cut(s)	476
PaeI	GCATGC	1 cut(s)	982
PcsI	WCGNNNNNNNCGW	1 cut(s)	622
PctI	GAATGC	3 cut(s)	138, 156, 1207
PflMI	CCANNNNNTGG	1 cut(s)	322
PinAI	ACCGGT	1 cut(s)	173
PkrI	GCNGC	7 cut(s)	137, 244, 610, 613, 883, 928, 1037
PshAI	GACNNNNGTC	1 cut(s)	1167
Psp6I	CCWGG	2 cut(s)	45, 524
PspFI	CCCAGC	1 cut(s)	804
PspGI	CCWGG	2 cut(s)	45, 524
PspN4I	GGNNCC	1 cut(s)	363
PspPI	GGNCC	2 cut(s)	1108, 1162
PstNI	CAGNNNCTG	1 cut(s)	184
PsuI	RGATCY	1 cut(s)	361
RsaI	GTAC	1 cut(s)	553
RsaNI	GTAC	1 cut(s)	552
RseI	CAYNNNNRTG	1 cut(s)	1302
SaqAI	TTAA	1 cut(s)	512
SatI	GCNGC	7 cut(s)	136, 243, 609, 612, 882, 927, 1036
Sau3AI	GATC	5 cut(s)	361, 1114, 1129, 1240, 1282
Sau96I	GGNCC	2 cut(s)	1108, 1162
ScrFI	CCNGG	3 cut(s)	47, 526, 1166
SfaNI	GCATC	3 cut(s)	272, 466, 658
SfcI	CTRYAG	1 cut(s)	1288
SfuI	TTCGAA	1 cut(s)	476
SinI	GGWCC	2 cut(s)	1108, 1162
SmiMI	CAYNNNNRTG	1 cut(s)	1302
SphI	GCATGC	1 cut(s)	982
Sse9I	AATT	6 cut(s)	348, 478, 509, 529, 793, 862
SsiI	CCGC	3 cut(s)	135, 1123, 1203
SspI	AATATT	1 cut(s)	380
SspMI	CTAG	3 cut(s)	246, 294, 780
StyD4I	CCNGG	3 cut(s)	45, 524, 1164
StyI	CCWWGG	1 cut(s)	1158
TaaI	ACNGT	4 cut(s)	194, 545, 801, 1256
TaiI	ACGT	1 cut(s)	26
TaqI	TCGA	5 cut(s)	62, 476, 568, 933, 1132
TasI	AATT	6 cut(s)	348, 478, 509, 529, 793, 862
TauI	GCSGC	1 cut(s)	138
Tru1I	TTAA	1 cut(s)	512
Tru9I	TTAA	1 cut(s)	512
TscAI	CASTG	1 cut(s)	879
TseFI	GTSAC	1 cut(s)	1244
TseI	GCWGC	6 cut(s)	242, 608, 611, 881, 926, 1035
Tsp45I	GTSAC	1 cut(s)	1244
TspDTI	ATGAA	5 cut(s)	96, 430, 460, 756, 981
TspRI	CASTG	1 cut(s)	879
Van91I	CCANNNNNTGG	1 cut(s)	322
VpaK11BI	GGWCC	2 cut(s)	1108, 1162
XapI	RAATTY	2 cut(s)	529, 793
XceI	RCATGY	1 cut(s)	982
XspI	CTAG	3 cut(s)	246, 294, 780

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.