AT2G26600

Belongs to the glycosyl hydrolase 17 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0013518
Physical Location & Seq
Forward (+)
11316346 .. 11318520
2175 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G26600.1

Sequence Viewer

Length: 1167 bp
ATGAGAAGTTCTAAGTTACTTCTTCTCAAGTTCTTCTTCTTCTTCTTCTTCAATCTGACTTCGCTTGAGTATCAAGTTGATGGAGCATTTGTTGGAACATATGGGATAAATTATGGAAGGATAGCTGACAACATACCATCTCCGGAGAAAGTAGTTTTACTTCTAAAGCAAGCTAAAATTCGGAATGTGCGTATATACGATGTAGATCACACTGTTCTTGAAGCTTTTAGTGGAACTGGTTTAGACCTTGTTGTTGGACTTCCTAATGGGTTTTTAAAAGAGATGAGTTCAAATGCTGATCATGCTTTCTCTTGGGTTAAAGAAAATATTCAGTCTTTCTTACCCAAGACTCGGATTCGCGGTATCGCTATAGGTAACGAAGTTCTTGGAGGCGGTGATTCTGAGCTCGCGGGAGCTTTACTTGGTGCTGCTAAAAATGTGTACAATGCGTTGAAGAAAATGAATCTGGAGGACACTGTGCAGATCACTACGGCTCATTCACAGGCTGTGTTTTCTGATTCCTACCCGCCTTCGTCTTGTGTGTTTAAAGAGAATGTTGTTCAGTTCATGAAGCCATTGTTGGAGTTTTTTCAGCAGATTGGGTCTCCTTTTTGTTTGAATGCTTACCCTTTTTTGGCGTACACTTATAATCCGAAGGAGATTGATATCAACTATGCTCTTTTCAAGCCAACGGAAGGGATATATGACCCGAAAACCGATTTGCATTACGATAACATGCTTGATGCTCAGATTGATGCTGCTTACATGGCGTTGCAAGATGCTGGGTTTAAGAAGATGGAGGTTATGATCACTGAAACTGGGTGGGCTTCTAAAGGGGATTCAGATGAACCTGCAGCAACACCAGAGAACGCAAGAACGTATAACTATAACCTCAGGAAGAGGCTTGCTAAGAAGAAAGGGACACCTCTTAGACCAAAAACGGTGCTTAAAGCCTATATCTTTGCATTGTTCAATGAAAACTCAAAACCGGGCAAGAGTTCTGAGACACACTTTGGACTTTTTAAACCTGATGGAACCATATCATATGACATTGGATTCAACAATCTAAAGTCTGATTCTCCCAAGTCACTCATTTCATCATCAAAGTCAGCTCGTTACTATGTGGCATTGGTCATCTCTGTCTCGGCTTTCCTCTTGATGATATAA

Protein Analysis

388

Amino Acids

43.24

Weight (kDa)

8.51

Isoelectric Point (pI)

34.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 35 - 353 1.3e-80 Glycosyl hydrolases family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013518)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26600 AT2G26600
fragaria_vesca FvH4_1g02990
malus_domestica MD02G1029300.v1.1 MD15G1170800.v1.1
prunus_persica Prupe.7G245600_v2.0.a1
pyrus_communis pycom02g02420 pycom15g15220
rosa_chinensis RchiOBHm_Chr2g0088131
rosa_laevigata RLG00000015924
rosa_multiflora Rmu_sc0003275.1_g000047
rosa_roxburghii Rroxscaffold_2G00152940
rosa_rugosa Rorug01G0481300
rosa_samantha Rh2AG036100 Rh2BG035300 Rh2CG036500 Rh2DG035800
rosa_wichuraiana Rw2G002840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 648
Acc36I ACCTGC 1 cut(s) 859
AccII CGCG 2 cut(s) 360, 410
AccIII TCCGGA 1 cut(s) 142
AciI CCGC 4 cut(s) 360, 393, 410, 527
AcsI RAATTY 1 cut(s) 177
AfaI GTAC 2 cut(s) 443, 641
AfiI CCNNNNNNNGG 3 cut(s) 351, 634, 695
AgsI TTSAA 8 cut(s) 52, 221, 291, 454, 619, 685, 973, 1060
AjuI GAANNNNNNNTTGG 2 cut(s) 563, 595
AluBI AGCT 6 cut(s) 125, 173, 224, 406, 416, 1112
AluI AGCT 6 cut(s) 125, 173, 224, 406, 416, 1112
Alw21I GWGCWC 1 cut(s) 408
Alw26I GTCTC 3 cut(s) 609, 998, 1147
Aor13HI TCCGGA 1 cut(s) 142
ApeKI GCWGC 3 cut(s) 428, 758, 854
ApoI RAATTY 1 cut(s) 177
Asp700I GAANNNNTTC 1 cut(s) 327
AsuC2I CCSGG 1 cut(s) 990
AsuHPI GGTGA 1 cut(s) 407
AxyI CCTNAGG 1 cut(s) 893
BanII GRGCYC 1 cut(s) 408
BarI GAAGNNNNNNTAC 2 cut(s) 144, 176
Bbv12I GWGCWC 1 cut(s) 408
BbvI GCAGC 3 cut(s) 415, 745, 866
BccI CCATC 4 cut(s) 74, 145, 790, 1025
BceAI ACGGC 1 cut(s) 507
BclI TGATCA 2 cut(s) 298, 807
BcnI CCSGG 1 cut(s) 990
BcoDI GTCTC 3 cut(s) 609, 998, 1147
BfmI CTRYAG 2 cut(s) 369, 852
BfuAI ACCTGC 1 cut(s) 859
BisI GCNGC 3 cut(s) 429, 759, 855
BlsI GCNGC 3 cut(s) 430, 760, 856
Bme1390I CCNGG 1 cut(s) 990
BmiI GGNNCC 1 cut(s) 1036
BmrFI CCNGG 1 cut(s) 990
BmrI ACTGGG 1 cut(s) 828
BmsI GCATC 3 cut(s) 733, 745, 769
BmuI ACTGGG 1 cut(s) 828
BpmI CTGGAG 1 cut(s) 488
BpuEI CTTGAG 2 cut(s) 11, 86
BpuMI CCSGG 1 cut(s) 990
BsaBI GATNNNNATC 2 cut(s) 204, 665
BsaI GGTCTC 1 cut(s) 609
BsaWI WCCGGW 1 cut(s) 142
BsaXI ACNNNNNCTCC 2 cut(s) 75, 105
Bsc4I CCNNNNNNNGG 3 cut(s) 351, 634, 695
Bse1I ACTGG 2 cut(s) 241, 823
Bse21I CCTNAGG 1 cut(s) 893
Bse8I GATNNNNATC 2 cut(s) 204, 665
BseAI TCCGGA 1 cut(s) 142
BseJI GATNNNNATC 2 cut(s) 204, 665
BseLI CCNNNNNNNGG 3 cut(s) 351, 634, 695
BseMII CTCAG 4 cut(s) 393, 761, 907, 993
BseNI ACTGG 2 cut(s) 241, 823
BseXI GCAGC 3 cut(s) 415, 745, 866
BseYI CCCAGC 1 cut(s) 782
BsgI GTGCAG 1 cut(s) 500
Bsh1236I CGCG 2 cut(s) 360, 410
BsiHKAI GWGCWC 1 cut(s) 408
BsiSI CCGG 2 cut(s) 143, 989
BslFI GGGAC 1 cut(s) 934
BslI CCNNNNNNNGG 3 cut(s) 351, 634, 695
BsmAI GTCTC 3 cut(s) 609, 998, 1147
BsmFI GGGAC 1 cut(s) 934
BsmI GAATGC 1 cut(s) 625
Bso31I GGTCTC 1 cut(s) 609
Bsp1286I GDGCHC 1 cut(s) 408
Bsp13I TCCGGA 1 cut(s) 142
Bsp1407I TGTACA 1 cut(s) 441
Bsp143I GATC 4 cut(s) 205, 298, 483, 807
BspACI CCGC 4 cut(s) 360, 393, 410, 527
BspCNI CTCAG 4 cut(s) 394, 760, 906, 994
BspEI TCCGGA 1 cut(s) 142
BspFNI CGCG 2 cut(s) 360, 410
BspHI TCATGA 1 cut(s) 567
BspLI GGNNCC 1 cut(s) 1036
BspMAI CTGCAG 1 cut(s) 856
BspMI ACCTGC 1 cut(s) 859
BspTNI GGTCTC 1 cut(s) 609
BsrGI TGTACA 1 cut(s) 441
BsrI ACTGG 2 cut(s) 241, 823
BssMI GATC 4 cut(s) 205, 298, 483, 807
Bst4CI ACNGT 3 cut(s) 214, 478, 943
Bst6I CTCTTC 1 cut(s) 893
BstAUI TGTACA 1 cut(s) 441
BstC8I GCNNGC 3 cut(s) 171, 408, 906
BstDEI CTNAG 7 cut(s) 12, 402, 747, 893, 909, 929, 1002
BstFNI CGCG 2 cut(s) 360, 410
BstKTI GATC 4 cut(s) 208, 301, 486, 810
BstMAI GTCTC 3 cut(s) 609, 998, 1147
BstMBI GATC 4 cut(s) 205, 298, 483, 807
BstMWI GCNNNNNNNGC 2 cut(s) 302, 767
BstNSI RCATGY 1 cut(s) 739
BstSCI CCNGG 1 cut(s) 988
BstSFI CTRYAG 2 cut(s) 369, 852
BstUI CGCG 2 cut(s) 360, 410
BstV1I GCAGC 3 cut(s) 415, 745, 866
Bsu36I CCTNAGG 1 cut(s) 893
BtsIMutI CAGTG 3 cut(s) 210, 474, 810
BveI ACCTGC 1 cut(s) 859
Cac8I GCNNGC 3 cut(s) 171, 408, 906
CciI TCATGA 1 cut(s) 567
Csp6I GTAC 2 cut(s) 442, 640
CviAII CATG 4 cut(s) 302, 568, 736, 766
CviQI GTAC 2 cut(s) 442, 640
DdeI CTNAG 7 cut(s) 12, 402, 747, 893, 909, 929, 1002
DpnI GATC 4 cut(s) 207, 300, 485, 809
DpnII GATC 4 cut(s) 205, 298, 483, 807
DraI TTTAAA 3 cut(s) 276, 547, 1024
Eam1104I CTCTTC 1 cut(s) 893
EarI CTCTTC 1 cut(s) 893
Ecl136II GAGCTC 1 cut(s) 406
Eco24I GRGCYC 1 cut(s) 408
Eco31I GGTCTC 1 cut(s) 609
Eco32I GATATC 1 cut(s) 667
Eco53kI GAGCTC 1 cut(s) 406
Eco81I CCTNAGG 1 cut(s) 893
EcoICRI GAGCTC 1 cut(s) 406
EcoRV GATATC 1 cut(s) 667
EcoT38I GRGCYC 1 cut(s) 408
FaeI CATG 4 cut(s) 305, 571, 739, 769
FalI AAGNNNNNCTT 2 cut(s) 20, 52
FaqI GGGAC 1 cut(s) 934
FatI CATG 4 cut(s) 301, 567, 735, 765
FauI CCCGC 2 cut(s) 403, 534
FauNDI CATATG 2 cut(s) 100, 1045
FbaI TGATCA 2 cut(s) 298, 807
Fnu4HI GCNGC 3 cut(s) 429, 759, 855
FriOI GRGCYC 1 cut(s) 408
Fsp4HI GCNGC 3 cut(s) 429, 759, 855
GluI GCNGC 3 cut(s) 429, 759, 855
GsaI CCCAGC 1 cut(s) 786
GsuI CTGGAG 1 cut(s) 488
HapII CCGG 2 cut(s) 143, 989
Hin1II CATG 4 cut(s) 305, 571, 739, 769
HindIII AAGCTT 1 cut(s) 222
HinfI GANTC 8 cut(s) 349, 355, 398, 463, 518, 839, 1056, 1076
HpaII CCGG 2 cut(s) 143, 989
HphI GGTGA 1 cut(s) 407
Hpy166II GTNNAC 2 cut(s) 442, 642
Hpy188III TCNNGA 6 cut(s) 143, 218, 467, 568, 895, 1156
Hpy8I GTNNAC 2 cut(s) 442, 642
HpyAV CCTTC 4 cut(s) 111, 540, 649, 689
HpyCH4III ACNGT 3 cut(s) 214, 478, 943
HpyCH4IV ACGT 1 cut(s) 878
HpyCH4V TGCA 5 cut(s) 481, 724, 775, 854, 965
HpyF10VI GCNNNNNNNGC 2 cut(s) 302, 767
HpyF3I CTNAG 7 cut(s) 12, 402, 747, 893, 909, 929, 1002
HpySE526I ACGT 1 cut(s) 878
Hsp92II CATG 4 cut(s) 305, 571, 739, 769
Kpn2I TCCGGA 1 cut(s) 142
Ksp22I TGATCA 2 cut(s) 298, 807
Kzo9I GATC 4 cut(s) 205, 298, 483, 807
LmnI GCTCC 2 cut(s) 83, 413
Lsp1109I GCAGC 3 cut(s) 415, 745, 866
LweI GCATC 3 cut(s) 733, 745, 769
MaeII ACGT 1 cut(s) 878
MaeIII GTNAC 4 cut(s) 15, 374, 1086, 1115
MalI GATC 4 cut(s) 207, 300, 485, 809
MboI GATC 4 cut(s) 205, 298, 483, 807
MhlI GDGCHC 1 cut(s) 408
MluCI AATT 2 cut(s) 109, 177
MlyI GAGTC 1 cut(s) 343
MmeI TCCRAC 3 cut(s) 73, 235, 561
MnlI CCTC 7 cut(s) 383, 463, 793, 894, 902, 936, 1163
MroI TCCGGA 1 cut(s) 142
MroXI GAANNNNTTC 1 cut(s) 327
MseI TTAA 6 cut(s) 275, 318, 546, 789, 948, 1023
MspI CCGG 2 cut(s) 143, 989
MspR9I CCNGG 1 cut(s) 990
Mva1269I GAATGC 1 cut(s) 625
MvnI CGCG 2 cut(s) 360, 410
MwoI GCNNNNNNNGC 2 cut(s) 302, 767
NciI CCSGG 1 cut(s) 990
NdeI CATATG 2 cut(s) 100, 1045
NdeII GATC 4 cut(s) 205, 298, 483, 807
NlaIII CATG 4 cut(s) 305, 571, 739, 769
NlaIV GGNNCC 1 cut(s) 1036
NmeAIII GCCGAG 1 cut(s) 1124
NmuCI GTSAC 1 cut(s) 1086
NspI RCATGY 1 cut(s) 739
PagI TCATGA 1 cut(s) 567
PcsI WCGNNNNNNNCGW 1 cut(s) 187
PctI GAATGC 1 cut(s) 625
PdmI GAANNNNTTC 1 cut(s) 327
PfeI GAWTC 7 cut(s) 355, 398, 463, 518, 839, 1056, 1076
PkrI GCNGC 3 cut(s) 430, 760, 856
PleI GAGTC 1 cut(s) 343
PpsI GAGTC 1 cut(s) 343
PsiI TTATAA 1 cut(s) 648
Psp124BI GAGCTC 1 cut(s) 408
PspFI CCCAGC 1 cut(s) 782
PspN4I GGNNCC 1 cut(s) 1036
PstI CTGCAG 1 cut(s) 856
RsaI GTAC 2 cut(s) 443, 641
RsaNI GTAC 2 cut(s) 442, 640
SacI GAGCTC 1 cut(s) 408
SaqAI TTAA 6 cut(s) 275, 318, 546, 789, 948, 1023
SatI GCNGC 3 cut(s) 429, 759, 855
Sau3AI GATC 4 cut(s) 205, 298, 483, 807
SchI GAGTC 1 cut(s) 343
ScrFI CCNGG 1 cut(s) 990
SduI GDGCHC 1 cut(s) 408
SfaNI GCATC 3 cut(s) 733, 745, 769
SfcI CTRYAG 2 cut(s) 369, 852
SmlI CTYRAG 2 cut(s) 26, 65
SmoI CTYRAG 2 cut(s) 26, 65
Sse9I AATT 2 cut(s) 109, 177
SsiI CCGC 4 cut(s) 360, 393, 410, 527
SspI AATATT 1 cut(s) 328
SstI GAGCTC 1 cut(s) 408
StyD4I CCNGG 1 cut(s) 988
TaaI ACNGT 3 cut(s) 214, 478, 943
TaiI ACGT 1 cut(s) 881
TasI AATT 2 cut(s) 109, 177
TatI WGTACW 1 cut(s) 441
TfiI GAWTC 7 cut(s) 355, 398, 463, 518, 839, 1056, 1076
Tru1I TTAA 6 cut(s) 275, 318, 546, 789, 948, 1023
Tru9I TTAA 6 cut(s) 275, 318, 546, 789, 948, 1023
TscAI CASTG 3 cut(s) 217, 481, 817
TseFI GTSAC 1 cut(s) 1086
TseI GCWGC 3 cut(s) 428, 758, 854
Tsp45I GTSAC 1 cut(s) 1086
TspDTI ATGAA 6 cut(s) 476, 556, 584, 861, 990, 1086
TspGWI ACGGA 1 cut(s) 707
TspRI CASTG 3 cut(s) 217, 481, 817
XapI RAATTY 1 cut(s) 177
XceI RCATGY 1 cut(s) 739
XmnI GAANNNNTTC 1 cut(s) 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.