MD15G1170800.v1.1

Belongs to the glycosyl hydrolase 17 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0013518
Physical Location & Seq
Reverse (-)
13173932 .. 13177500
3569 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1170800.v1.1.491

Sequence Viewer

Length: 1197 bp
ATGAAAAGCTTCTGGTTTTTTGCTCAGTTTGTTCTCGTCTTCCTGGTGTTCTTCCCTCCAATTGCCTCTGTGGCGGTGCAAGCATTCACTGGAGCATATGGAATAAATTACGGAAGAATTGCAGATAACATCCCTTCTCCTGATAAAGTTGCTACTCTTCTCAGAGCAGCAAAGATAAAGAATGTCAGGATATATGATGCTGATCACAGTGTTCTCAAGGCTTTTAGCGGGACTGGGCTTGAGTTAGTGGTAGGGCTTCCAAATGGGTACCTGAAAGACATGAGTGCCAATGAAGATCATGCAATGGATTGGGTTAAAGAGAATGTGCAGGCGTTCCTTCCCGACACGCATATCTGTGGGATTGCTGTGGGTAATGAAGTTTTAGGTGGGGTTGATTATGAATTGTGGGCAGCTCTTTTGGGTGCAGTCAAAAACATCTATAATGCGATAAAGAAACTAGGATTAACTGATGTAGTTCAGATTACTACTGCACATTCTCAGGCCGTTTTTGCTAATTCGTATCCTCCCTCTTCGTGTATATTTAAAGATAATATTAAGCAGCAGTACATGAAGCCGCTTCTGGAGTTCTTCTCAGAAATTGGGTCTCCCTTCTGTTTAAATGCTTACCCATTCCTTGCCTACATGAGTGATCCGGAGAATATTGATATTAATTATGCTCTGTTCCAGAAAACTCAAGGAATTTACGATCCAAAAACTGACCTTCATTATGATAACATGCTCGATGCTCAGATTGATGCAGCCTATGCAGCATTGGAAGATGCTGGGTTCAAAAAGATGGAAGTTATTATTACAGAGACAGGATGGGCTTCACGTGGAGATGACAATGAAGCTGCCGCTACTGTAAATAATGCAAGGACATACAATTATAATCTACGTAAAAGGCTAGCAAAGAAAAAAGGGACCCCTATGCGGCCAAAATTTGTAGTGAAGGCATACATTTTTGCCATTTTTAATGAAGACTTGAAACCGGGACCAACTTCTGAGAGAAATTTTGGACTGTTCAAGCCTGATGGGACGATTGCTTATGATATTGGGTATCGTGGACTTGTATCATCATCTGCAGATTCGTTGCGGTTATCTTCAAAGGACATTGGAGCTCAAGGTTGGCCTCGGTTGCAATTCTTGATACTATCAATTTCTTCTGCAGCATTGCTTCTGTTTTTAGGTAATGATTGA

Protein Analysis

399

Amino Acids

44.01

Weight (kDa)

6.01

Isoelectric Point (pI)

33.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 34 - 351 4.5e-79 Glycosyl hydrolases family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013518)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26600 AT2G26600
fragaria_vesca FvH4_1g02990
malus_domestica MD02G1029300.v1.1 MD15G1170800.v1.1
prunus_persica Prupe.7G245600_v2.0.a1
pyrus_communis pycom02g02420 pycom15g15220
rosa_chinensis RchiOBHm_Chr2g0088131
rosa_laevigata RLG00000015924
rosa_multiflora Rmu_sc0003275.1_g000047
rosa_roxburghii Rroxscaffold_2G00152940
rosa_rugosa Rorug01G0481300
rosa_samantha Rh2AG036100 Rh2BG035300 Rh2CG036500 Rh2DG035800
rosa_wichuraiana Rw2G002840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 888
Acc65I GGTACC 1 cut(s) 267
AccB1I GGYRCC 1 cut(s) 267
AccIII TCCGGA 1 cut(s) 652
AciI CCGC 6 cut(s) 74, 228, 575, 855, 931, 1093
AclWI GGATC 2 cut(s) 644, 701
AcoI YGGCCR 1 cut(s) 932
AcsI RAATTY 3 cut(s) 699, 938, 1009
AcvI CACGTG 1 cut(s) 833
AfaI GTAC 2 cut(s) 269, 566
AfiI CCNNNNNNNGG 1 cut(s) 930
AgsI TTSAA 4 cut(s) 790, 985, 1024, 1104
AjnI CCWGG 1 cut(s) 42
AluBI AGCT 4 cut(s) 9, 413, 851, 1118
AluI AGCT 4 cut(s) 9, 413, 851, 1118
Alw21I GWGCWC 1 cut(s) 1120
Alw26I GTCTC 2 cut(s) 609, 809
AlwI GGATC 2 cut(s) 644, 701
Aor13HI TCCGGA 1 cut(s) 652
AoxI GGCC 3 cut(s) 501, 932, 1127
ApeKI GCWGC 7 cut(s) 167, 410, 559, 758, 767, 851, 1166
ApoI RAATTY 3 cut(s) 699, 938, 1009
AseI ATTAAT 1 cut(s) 669
Asp700I GAANNNNTTC 1 cut(s) 8
Asp718I GGTACC 1 cut(s) 267
AspS9I GGNCC 2 cut(s) 921, 992
AsuC2I CCSGG 1 cut(s) 990
AsuNHI GCTAGC 1 cut(s) 904
AvaII GGWCC 2 cut(s) 921, 992
BanI GGYRCC 1 cut(s) 267
BanII GRGCYC 1 cut(s) 1120
BbrPI CACGTG 1 cut(s) 833
BbsI GAAGAC 2 cut(s) 31, 984
Bbv12I GWGCWC 1 cut(s) 1120
BbvI GCAGC 7 cut(s) 179, 422, 571, 770, 779, 838, 1178
BccI CCATC 3 cut(s) 790, 816, 1025
BceAI ACGGC 1 cut(s) 488
BciT130I CCWGG 1 cut(s) 44
BciVI GTATCC 1 cut(s) 531
BclI TGATCA 1 cut(s) 202
BcnI CCSGG 1 cut(s) 990
BcoDI GTCTC 2 cut(s) 609, 809
BfaI CTAG 2 cut(s) 458, 905
BfmI CTRYAG 2 cut(s) 1080, 1164
BfuI GTATCC 1 cut(s) 531
BglI GCCNNNNNGGC 1 cut(s) 71
Bme1390I CCNGG 2 cut(s) 44, 990
Bme18I GGWCC 2 cut(s) 921, 992
BmgT120I GGNCC 2 cut(s) 921, 992
BmiI GGNNCC 4 cut(s) 269, 922, 923, 993
BmrFI CCNGG 2 cut(s) 44, 990
BmrI ACTGGG 1 cut(s) 243
BmsI GCATC 4 cut(s) 187, 733, 745, 769
BmtI GCTAGC 1 cut(s) 908
BmuI ACTGGG 1 cut(s) 243
BpiI GAAGAC 2 cut(s) 31, 984
BplI GAGNNNNNCTC 2 cut(s) 575, 607
BpmI CTGGAG 2 cut(s) 111, 602
BpuEI CTTGAG 4 cut(s) 200, 260, 678, 1104
BpuMI CCSGG 1 cut(s) 990
BsaAI YACGTR 2 cut(s) 833, 896
BsaBI GATNNNNATC 1 cut(s) 201
BsaI GGTCTC 1 cut(s) 609
BsaJI CCNNGG 1 cut(s) 1130
BsaWI WCCGGW 1 cut(s) 652
Bsc4I CCNNNNNNNGG 1 cut(s) 930
Bse1I ACTGG 2 cut(s) 94, 238
Bse3DI GCAATG 2 cut(s) 309, 1169
Bse8I GATNNNNATC 1 cut(s) 201
BseAI TCCGGA 1 cut(s) 652
BseBI CCWGG 1 cut(s) 44
BseDI CCNNGG 1 cut(s) 1130
BseGI GGATG 2 cut(s) 129, 827
BseJI GATNNNNATC 1 cut(s) 201
BseLI CCNNNNNNNGG 1 cut(s) 930
BseMI GCAATG 2 cut(s) 309, 1169
BseMII CTCAG 6 cut(s) 38, 175, 512, 606, 761, 993
BseNI ACTGG 2 cut(s) 94, 238
BseXI GCAGC 7 cut(s) 179, 422, 571, 770, 779, 838, 1178
BseYI CCCAGC 1 cut(s) 782
BsgI GTGCAG 3 cut(s) 347, 444, 474
BshFI GGCC 3 cut(s) 503, 934, 1129
BshNI GGYRCC 1 cut(s) 267
BsiHKAI GWGCWC 1 cut(s) 1120
BsiSI CCGG 2 cut(s) 653, 989
BslFI GGGAC 4 cut(s) 244, 934, 1005, 1048
BslI CCNNNNNNNGG 1 cut(s) 930
BsmAI GTCTC 2 cut(s) 609, 809
BsmFI GGGAC 4 cut(s) 244, 934, 1005, 1048
BsmI GAATGC 1 cut(s) 83
BsnI GGCC 3 cut(s) 503, 934, 1129
Bso31I GGTCTC 1 cut(s) 609
Bsp1286I GDGCHC 1 cut(s) 1120
Bsp13I TCCGGA 1 cut(s) 652
Bsp143I GATC 4 cut(s) 202, 295, 649, 706
BspACI CCGC 6 cut(s) 74, 228, 575, 855, 931, 1093
BspANI GGCC 3 cut(s) 503, 934, 1129
BspCNI CTCAG 6 cut(s) 37, 174, 511, 605, 760, 994
BspEI TCCGGA 1 cut(s) 652
BspLI GGNNCC 4 cut(s) 269, 922, 923, 993
BspMAI CTGCAG 2 cut(s) 1084, 1168
BspOI GCTAGC 1 cut(s) 908
BspPI GGATC 2 cut(s) 644, 701
BspT107I GGYRCC 1 cut(s) 267
BspTNI GGTCTC 1 cut(s) 609
BsrDI GCAATG 2 cut(s) 309, 1169
BsrI ACTGG 2 cut(s) 94, 238
BssECI CCNNGG 1 cut(s) 1130
BssMI GATC 4 cut(s) 202, 295, 649, 706
Bst2UI CCWGG 1 cut(s) 44
Bst4CI ACNGT 3 cut(s) 209, 862, 1020
Bst6I CTCTTC 2 cut(s) 162, 535
BstAPI GCANNNNNTGC 1 cut(s) 764
BstBAI YACGTR 2 cut(s) 833, 896
BstC8I GCNNGC 3 cut(s) 81, 330, 906
BstDEI CTNAG 6 cut(s) 24, 161, 498, 592, 747, 1002
BstF5I GGATG 2 cut(s) 129, 827
BstKTI GATC 4 cut(s) 205, 298, 652, 709
BstMAI GTCTC 2 cut(s) 609, 809
BstMBI GATC 4 cut(s) 202, 295, 649, 706
BstMWI GCNNNNNNNGC 6 cut(s) 71, 80, 509, 764, 767, 1135
BstNI CCWGG 1 cut(s) 44
BstNSI RCATGY 1 cut(s) 739
BstSCI CCNGG 2 cut(s) 42, 988
BstSFI CTRYAG 2 cut(s) 1080, 1164
BstSNI TACGTA 1 cut(s) 896
BstV1I GCAGC 7 cut(s) 179, 422, 571, 770, 779, 838, 1178
BstV2I GAAGAC 2 cut(s) 31, 984
BsuI GTATCC 1 cut(s) 531
BsuRI GGCC 3 cut(s) 503, 934, 1129
BtsCI GGATG 2 cut(s) 129, 827
BtsIMutI CAGTG 2 cut(s) 87, 214
Cac8I GCNNGC 3 cut(s) 81, 330, 906
Cfr13I GGNCC 2 cut(s) 921, 992
Csp6I GTAC 2 cut(s) 268, 565
CviAII CATG 5 cut(s) 280, 299, 568, 643, 736
CviQI GTAC 2 cut(s) 268, 565
DdeI CTNAG 6 cut(s) 24, 161, 498, 592, 747, 1002
DpnI GATC 4 cut(s) 204, 297, 651, 708
DpnII GATC 4 cut(s) 202, 295, 649, 706
DraI TTTAAA 2 cut(s) 544, 618
EaeI YGGCCR 1 cut(s) 932
Eam1104I CTCTTC 2 cut(s) 162, 535
EarI CTCTTC 2 cut(s) 162, 535
Ecl136II GAGCTC 1 cut(s) 1118
Eco105I TACGTA 1 cut(s) 896
Eco24I GRGCYC 1 cut(s) 1120
Eco31I GGTCTC 1 cut(s) 609
Eco47I GGWCC 2 cut(s) 921, 992
Eco53kI GAGCTC 1 cut(s) 1118
Eco72I CACGTG 1 cut(s) 833
EcoICRI GAGCTC 1 cut(s) 1118
EcoO109I RGGNCCY 1 cut(s) 921
EcoRII CCWGG 1 cut(s) 42
EcoT38I GRGCYC 1 cut(s) 1120
FaeI CATG 5 cut(s) 283, 302, 571, 646, 739
FaqI GGGAC 4 cut(s) 244, 934, 1005, 1048
FatI CATG 5 cut(s) 279, 298, 567, 642, 735
FauI CCCGC 1 cut(s) 221
FauNDI CATATG 1 cut(s) 97
FbaI TGATCA 1 cut(s) 202
FokI GGATG 2 cut(s) 116, 834
FriOI GRGCYC 1 cut(s) 1120
FspBI CTAG 2 cut(s) 458, 905
GsaI CCCAGC 1 cut(s) 786
GsuI CTGGAG 2 cut(s) 111, 602
HaeIII GGCC 3 cut(s) 503, 934, 1129
HapII CCGG 2 cut(s) 653, 989
Hin1II CATG 5 cut(s) 283, 302, 571, 646, 739
HindIII AAGCTT 1 cut(s) 7
HinfI GANTC 1 cut(s) 1085
HpaII CCGG 2 cut(s) 653, 989
Hpy166II GTNNAC 1 cut(s) 1064
Hpy188I TCNGA 5 cut(s) 164, 480, 595, 750, 1003
Hpy188III TCNNGA 7 cut(s) 140, 187, 341, 581, 653, 685, 1144
Hpy8I GTNNAC 1 cut(s) 1064
HpyAV CCTTC 5 cut(s) 144, 347, 619, 731, 943
HpyCH4III ACNGT 3 cut(s) 209, 862, 1020
HpyCH4IV ACGT 2 cut(s) 832, 895
HpyF10VI GCNNNNNNNGC 6 cut(s) 71, 80, 509, 764, 767, 1135
HpyF3I CTNAG 6 cut(s) 24, 161, 498, 592, 747, 1002
HpySE526I ACGT 2 cut(s) 832, 895
Hsp92II CATG 5 cut(s) 283, 302, 571, 646, 739
KflI GGGWCCC 1 cut(s) 921
Kpn2I TCCGGA 1 cut(s) 652
KpnI GGTACC 1 cut(s) 271
Ksp22I TGATCA 1 cut(s) 202
Kzo9I GATC 4 cut(s) 202, 295, 649, 706
LmnI GCTCC 2 cut(s) 92, 1115
Lsp1109I GCAGC 7 cut(s) 179, 422, 571, 770, 779, 838, 1178
LweI GCATC 4 cut(s) 187, 733, 745, 769
MaeI CTAG 2 cut(s) 458, 905
MaeII ACGT 2 cut(s) 832, 895
MalI GATC 4 cut(s) 204, 297, 651, 708
MboI GATC 4 cut(s) 202, 295, 649, 706
MfeI CAATTG 1 cut(s) 60
MhlI GDGCHC 1 cut(s) 1120
MnlI CCTC 5 cut(s) 66, 76, 534, 538, 1140
MroI TCCGGA 1 cut(s) 652
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 7 cut(s) 315, 464, 543, 555, 617, 669, 972
MslI CAYNNNNRTG 1 cut(s) 354
MspI CCGG 2 cut(s) 653, 989
MspR9I CCNGG 2 cut(s) 44, 990
MunI CAATTG 1 cut(s) 60
Mva1269I GAATGC 1 cut(s) 83
MvaI CCWGG 1 cut(s) 44
MwoI GCNNNNNNNGC 6 cut(s) 71, 80, 509, 764, 767, 1135
NciI CCSGG 1 cut(s) 990
NdeI CATATG 1 cut(s) 97
NdeII GATC 4 cut(s) 202, 295, 649, 706
NheI GCTAGC 1 cut(s) 904
NlaIII CATG 5 cut(s) 283, 302, 571, 646, 739
NlaIV GGNNCC 4 cut(s) 269, 922, 923, 993
NspI RCATGY 1 cut(s) 739
PctI GAATGC 1 cut(s) 83
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 1 cut(s) 1085
PmaCI CACGTG 1 cut(s) 833
PmlI CACGTG 1 cut(s) 833
Ppu21I YACGTR 2 cut(s) 833, 896
PpuMI RGGWCCY 1 cut(s) 921
PshBI ATTAAT 1 cut(s) 669
PsiI TTATAA 1 cut(s) 888
Psp124BI GAGCTC 1 cut(s) 1120
Psp5II RGGWCCY 1 cut(s) 921
Psp6I CCWGG 1 cut(s) 42
PspCI CACGTG 1 cut(s) 833
PspFI CCCAGC 1 cut(s) 782
PspGI CCWGG 1 cut(s) 42
PspN4I GGNNCC 4 cut(s) 269, 922, 923, 993
PspPI GGNCC 2 cut(s) 921, 992
PspPPI RGGWCCY 1 cut(s) 921
PstI CTGCAG 2 cut(s) 1084, 1168
RsaI GTAC 2 cut(s) 269, 566
RsaNI GTAC 2 cut(s) 268, 565
RseI CAYNNNNRTG 1 cut(s) 354
SacI GAGCTC 1 cut(s) 1120
SaqAI TTAA 7 cut(s) 315, 464, 543, 555, 617, 669, 972
Sau3AI GATC 4 cut(s) 202, 295, 649, 706
Sau96I GGNCC 2 cut(s) 921, 992
ScrFI CCNGG 2 cut(s) 44, 990
SduI GDGCHC 1 cut(s) 1120
SfaNI GCATC 4 cut(s) 187, 733, 745, 769
SfcI CTRYAG 2 cut(s) 1080, 1164
SinI GGWCC 2 cut(s) 921, 992
SmiMI CAYNNNNRTG 1 cut(s) 354
SmlI CTYRAG 4 cut(s) 215, 239, 693, 1119
SmoI CTYRAG 4 cut(s) 215, 239, 693, 1119
SnaBI TACGTA 1 cut(s) 896
SsiI CCGC 6 cut(s) 74, 228, 575, 855, 931, 1093
SspI AATATT 2 cut(s) 553, 661
SspMI CTAG 2 cut(s) 458, 905
SstI GAGCTC 1 cut(s) 1120
StyD4I CCNGG 2 cut(s) 42, 988
TaaI ACNGT 3 cut(s) 209, 862, 1020
TaiI ACGT 2 cut(s) 835, 898
TaqI TCGA 1 cut(s) 741
TatI WGTACW 1 cut(s) 564
TauI GCSGC 3 cut(s) 577, 857, 934
TfiI GAWTC 1 cut(s) 1085
Tru1I TTAA 7 cut(s) 315, 464, 543, 555, 617, 669, 972
Tru9I TTAA 7 cut(s) 315, 464, 543, 555, 617, 669, 972
TscAI CASTG 2 cut(s) 94, 214
TseI GCWGC 7 cut(s) 167, 410, 559, 758, 767, 851, 1166
TspDTI ATGAA 8 cut(s) 17, 306, 390, 414, 584, 713, 861, 990
TspGWI ACGGA 1 cut(s) 126
TspRI CASTG 2 cut(s) 94, 214
VpaK11BI GGWCC 2 cut(s) 921, 992
VspI ATTAAT 1 cut(s) 669
XapI RAATTY 3 cut(s) 699, 938, 1009
XceI RCATGY 1 cut(s) 739
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 2 cut(s) 458, 905
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.