Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0013518

Physical Location & Seq

Genomic Coordinates Reverse (-)

1681067 .. 1683579

Gene Structure 2513 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g02990.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGAGAATCAAAAGCTTCTGCTTTTTTGTACAGGTCTTCTTGGTCTTCTTCTCTCTAATTGCCACTGTGACTGTGCAAGCATTCACTGGAGCATACGGAATAAATTATGGAAGAATTGCAGATAACATTCCTTCTCCAGATAAAGTTGCTACACTTCTTAGAGCAGCAAAGATAAAGAATGTCAGGATATATGATGCTGATCACAGTGTTCTCAAGGCTTTTAGCGGGACTGGGCTTGATTTAGTGGTTGGGCTTCCAAATGGATACGTGAAAGATATGAGTGCCAATCAAGATCACGCACTGGATTGGGTTAAAGAAAATGTGCAGGCATTTCTTCCTGATACACACATCAGAGGGATTGCGGTGGGTAATGAAGTATTAGGTGGGGGTGATCTTGAATTGTGGGCAGCTCTTTTGGGTGCAGTTAAAAACATCTATAATGCAACAAAGTTGCTAAAGTTAGACGATGTAGTTCAGATTACCACAGCACATTCACAGGCTGTTTTTTCTAATTCATACCCTCCCTCTTCCTGTATATTTAAGGATAATGTTAAGCAGCAGTACATGAAGCCACTTTTGCAGTTCTTCTCAGAAATTGGTTCTCCCTTCTGTCTGAATGCTTACCCGTTCCTTGACTACATGGGTGACCCGGAGAATATTGATATCAACTATGCTCTTTTCCAGAAAACACAAGGGATTTATGATCCAAAAAATGATCTTCATTATGACAATATGCTTGATGCTCAGATTGATGCAGCCTATTCAGCTTTGGAAGATGCTGGTTTGAAAAAGATGGAAGTTATTATTACAGAGACAGGATGGGCTTCCCGTGGAGATGACAATGAAGCTGCAGCTACAGCAGAGAATGCAAGGACATATAACTATAACCTACGTAAAAGGCTAGCAAAGAAGAAAGGGACCCCTCTCCGGCCACATTTTGTAGTGAAGGCATACATATTTGCCATATTTAATGAGAACTTGAAACCCGGCCCAACTTCTGAGAGAAATTTTGGACTGTTCAAGCCTGATGGAACCATTTCATATGATATTGGGTTTCATGGACTTGTATCATCATCTGCAGATTCATCGCATTCATCTTTAAAGGTACTAGGTTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0007154 GO:0008150 GO:0008422 GO:0009505 GO:0009987 GO:0015926 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0042973 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

373

Amino Acids

41.06

Weight (kDa)

6.25

Isoelectric Point (pI)

31.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	33 - 352	2e-78	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013518)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26600 AT2G26600
fragaria_vesca	FvH4_1g02990
malus_domestica	MD02G1029300.v1.1 MD15G1170800.v1.1
prunus_persica	Prupe.7G245600_v2.0.a1
pyrus_communis	pycom02g02420 pycom15g15220
rosa_chinensis	RchiOBHm_Chr2g0088131
rosa_laevigata	RLG00000015924
rosa_multiflora	Rmu_sc0003275.1_g000047
rosa_roxburghii	Rroxscaffold_2G00152940
rosa_rugosa	Rorug01G0481300
rosa_samantha	Rh2AG036100 Rh2BG035300 Rh2CG036500 Rh2DG035800
rosa_wichuraiana	Rw2G002840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	225, 362
AclWI	GGATC	1 cut(s)	698
AcoI	YGGCCR	1 cut(s)	929
AcsI	RAATTY	1 cut(s)	1006
AfaI	GTAC	3 cut(s)	30, 563, 1107
AfiI	CCNNNNNNNGG	1 cut(s)	927
AgsI	TTSAA	4 cut(s)	398, 787, 982, 1021
AluBI	AGCT	5 cut(s)	15, 410, 767, 848, 854
AluI	AGCT	5 cut(s)	15, 410, 767, 848, 854
Alw26I	GTCTC	1 cut(s)	806
AlwI	GGATC	1 cut(s)	698
AoxI	GGCC	2 cut(s)	929, 988
ApeKI	GCWGC	6 cut(s)	164, 407, 556, 755, 848, 851
ApoI	RAATTY	1 cut(s)	1006
Asp700I	GAANNNNTTC	1 cut(s)	1036
AspS9I	GGNCC	2 cut(s)	918, 989
AsuC2I	CCSGG	2 cut(s)	650, 987
AsuHPI	GGTGA	2 cut(s)	401, 656
AsuNHI	GCTAGC	1 cut(s)	901
AvaII	GGWCC	1 cut(s)	918
BbsI	GAAGAC	2 cut(s)	28, 37
BbvI	GCAGC	6 cut(s)	176, 419, 568, 767, 835, 863
BccI	CCATC	3 cut(s)	787, 813, 1022
BcgI	CGANNNNNNTGC	2 cut(s)	1068, 1102
BciVI	GTATCC	1 cut(s)	257
BclI	TGATCA	1 cut(s)	199
BcnI	CCSGG	2 cut(s)	650, 987
BcoDI	GTCTC	1 cut(s)	806
BfaI	CTAG	2 cut(s)	902, 1109
BfmI	CTRYAG	3 cut(s)	849, 855, 1077
BfuI	GTATCC	1 cut(s)	257
BisI	GCNGC	6 cut(s)	165, 408, 557, 756, 849, 852
BlsI	GCNGC	6 cut(s)	166, 409, 558, 757, 850, 853
Bme1390I	CCNGG	2 cut(s)	650, 987
Bme18I	GGWCC	1 cut(s)	918
BmgT120I	GGNCC	2 cut(s)	918, 989
BmiI	GGNNCC	4 cut(s)	919, 920, 1033, 1114
BmrFI	CCNGG	2 cut(s)	650, 987
BmrI	ACTGGG	1 cut(s)	240
BmsI	GCATC	4 cut(s)	184, 730, 742, 766
BmtI	GCTAGC	1 cut(s)	905
BmuI	ACTGGG	1 cut(s)	240
BpiI	GAAGAC	2 cut(s)	28, 37
BpmI	CTGGAG	2 cut(s)	108, 120
BpuEI	CTTGAG	1 cut(s)	197
BpuMI	CCSGG	2 cut(s)	650, 987
BsaAI	YACGTR	2 cut(s)	268, 893
BsaBI	GATNNNNATC	1 cut(s)	198
BsaJI	CCNNGG	1 cut(s)	829
Bsc4I	CCNNNNNNNGG	1 cut(s)	927
Bse1I	ACTGG	3 cut(s)	91, 235, 306
Bse8I	GATNNNNATC	1 cut(s)	198
BseDI	CCNNGG	1 cut(s)	829
BseGI	GGATG	1 cut(s)	824
BseJI	GATNNNNATC	1 cut(s)	198
BseLI	CCNNNNNNNGG	1 cut(s)	927
BseMII	CTCAG	3 cut(s)	603, 758, 990
BseNI	ACTGG	3 cut(s)	91, 235, 306
BseXI	GCAGC	6 cut(s)	176, 419, 568, 767, 835, 863
BsgI	GTGCAG	2 cut(s)	344, 441
BshFI	GGCC	2 cut(s)	931, 990
BsiSI	CCGG	3 cut(s)	650, 928, 987
BslFI	GGGAC	2 cut(s)	241, 931
BslI	CCNNNNNNNGG	1 cut(s)	927
BsmAI	GTCTC	1 cut(s)	806
BsmFI	GGGAC	2 cut(s)	241, 931
BsmI	GAATGC	4 cut(s)	80, 622, 871, 1090
BsnI	GGCC	2 cut(s)	931, 990
Bsp1407I	TGTACA	1 cut(s)	28
Bsp143I	GATC	5 cut(s)	199, 292, 391, 703, 715
BspACI	CCGC	2 cut(s)	225, 362
BspANI	GGCC	2 cut(s)	931, 990
BspCNI	CTCAG	3 cut(s)	602, 757, 991
BspLI	GGNNCC	4 cut(s)	919, 920, 1033, 1114
BspMAI	CTGCAG	2 cut(s)	853, 1081
BspOI	GCTAGC	1 cut(s)	905
BspPI	GGATC	1 cut(s)	698
BsrGI	TGTACA	1 cut(s)	28
BsrI	ACTGG	3 cut(s)	91, 235, 306
BssECI	CCNNGG	1 cut(s)	829
BssMI	GATC	5 cut(s)	199, 292, 391, 703, 715
Bst4CI	ACNGT	4 cut(s)	67, 73, 206, 1017
Bst6I	CTCTTC	1 cut(s)	532
BstAPI	GCANNNNNTGC	1 cut(s)	866
BstAUI	TGTACA	1 cut(s)	28
BstBAI	YACGTR	2 cut(s)	268, 893
BstC8I	GCNNGC	3 cut(s)	78, 327, 903
BstDEI	CTNAG	4 cut(s)	158, 589, 744, 999
BstDSI	CCRYGG	1 cut(s)	829
BstEII	GGTNACC	1 cut(s)	644
BstF5I	GGATG	1 cut(s)	824
BstKTI	GATC	5 cut(s)	202, 295, 394, 706, 718
BstMAI	GTCTC	1 cut(s)	806
BstMBI	GATC	5 cut(s)	199, 292, 391, 703, 715
BstMWI	GCNNNNNNNGC	4 cut(s)	577, 764, 857, 866
BstPI	GGTNACC	1 cut(s)	644
BstSCI	CCNGG	2 cut(s)	648, 985
BstSFI	CTRYAG	3 cut(s)	849, 855, 1077
BstSNI	TACGTA	1 cut(s)	893
BstV1I	GCAGC	6 cut(s)	176, 419, 568, 767, 835, 863
BstV2I	GAAGAC	2 cut(s)	28, 37
BsuI	GTATCC	1 cut(s)	257
BsuRI	GGCC	2 cut(s)	931, 990
BtgI	CCRYGG	1 cut(s)	829
BtgZI	GCGATG	1 cut(s)	1071
BtsCI	GGATG	1 cut(s)	824
BtsIMutI	CAGTG	4 cut(s)	63, 84, 211, 299
Cac8I	GCNNGC	3 cut(s)	78, 327, 903
Cfr13I	GGNCC	2 cut(s)	918, 989
Csp6I	GTAC	3 cut(s)	29, 562, 1106
CviAII	CATG	3 cut(s)	565, 640, 1058
CviQI	GTAC	3 cut(s)	29, 562, 1106
DdeI	CTNAG	4 cut(s)	158, 589, 744, 999
DpnI	GATC	5 cut(s)	201, 294, 393, 705, 717
DpnII	GATC	5 cut(s)	199, 292, 391, 703, 715
DraI	TTTAAA	1 cut(s)	1101
EaeI	YGGCCR	1 cut(s)	929
Eam1104I	CTCTTC	1 cut(s)	532
EarI	CTCTTC	1 cut(s)	532
Eco105I	TACGTA	1 cut(s)	893
Eco32I	GATATC	1 cut(s)	664
Eco47I	GGWCC	1 cut(s)	918
Eco91I	GGTNACC	1 cut(s)	644
EcoO109I	RGGNCCY	1 cut(s)	918
EcoO65I	GGTNACC	1 cut(s)	644
EcoRV	GATATC	1 cut(s)	664
FaeI	CATG	3 cut(s)	568, 643, 1061
FaqI	GGGAC	2 cut(s)	241, 931
FatI	CATG	3 cut(s)	564, 639, 1057
FauI	CCCGC	1 cut(s)	218
FauNDI	CATATG	1 cut(s)	1042
FbaI	TGATCA	1 cut(s)	199
Fnu4HI	GCNGC	6 cut(s)	165, 408, 557, 756, 849, 852
FokI	GGATG	1 cut(s)	831
Fsp4HI	GCNGC	6 cut(s)	165, 408, 557, 756, 849, 852
FspBI	CTAG	2 cut(s)	902, 1109
GluI	GCNGC	6 cut(s)	165, 408, 557, 756, 849, 852
GsuI	CTGGAG	2 cut(s)	108, 120
HaeIII	GGCC	2 cut(s)	931, 990
HapII	CCGG	3 cut(s)	650, 928, 987
Hin1II	CATG	3 cut(s)	568, 643, 1061
HindIII	AAGCTT	1 cut(s)	13
HinfI	GANTC	2 cut(s)	6, 1082
HpaII	CCGG	3 cut(s)	650, 928, 987
HphI	GGTGA	2 cut(s)	401, 656
Hpy188I	TCNGA	6 cut(s)	353, 477, 592, 615, 747, 1000
Hpy188III	TCNNGA	7 cut(s)	137, 184, 290, 338, 395, 682, 1116
HpyAV	CCTTC	3 cut(s)	141, 616, 940
HpyCH4III	ACNGT	4 cut(s)	67, 73, 206, 1017
HpyCH4IV	ACGT	2 cut(s)	267, 892
HpyF10VI	GCNNNNNNNGC	4 cut(s)	577, 764, 857, 866
HpyF3I	CTNAG	4 cut(s)	158, 589, 744, 999
HpySE526I	ACGT	2 cut(s)	267, 892
Hsp92II	CATG	3 cut(s)	568, 643, 1061
KflI	GGGWCCC	1 cut(s)	918
Ksp22I	TGATCA	1 cut(s)	199
Kzo9I	GATC	5 cut(s)	199, 292, 391, 703, 715
LmnI	GCTCC	1 cut(s)	89
Lsp1109I	GCAGC	6 cut(s)	176, 419, 568, 767, 835, 863
LweI	GCATC	4 cut(s)	184, 730, 742, 766
MaeI	CTAG	2 cut(s)	902, 1109
MaeII	ACGT	2 cut(s)	267, 892
MaeIII	GTNAC	2 cut(s)	67, 644
MalI	GATC	5 cut(s)	201, 294, 393, 705, 717
MboI	GATC	5 cut(s)	199, 292, 391, 703, 715
MluCI	AATT	7 cut(s)	57, 103, 114, 398, 511, 594, 1006
MnlI	CCTC	4 cut(s)	347, 531, 535, 933
MroXI	GAANNNNTTC	1 cut(s)	1036
MseI	TTAA	6 cut(s)	312, 426, 540, 552, 969, 1100
MspI	CCGG	3 cut(s)	650, 928, 987
MspR9I	CCNGG	2 cut(s)	650, 987
Mva1269I	GAATGC	4 cut(s)	80, 622, 871, 1090
MwoI	GCNNNNNNNGC	4 cut(s)	577, 764, 857, 866
NciI	CCSGG	2 cut(s)	650, 987
NdeI	CATATG	1 cut(s)	1042
NdeII	GATC	5 cut(s)	199, 292, 391, 703, 715
NheI	GCTAGC	1 cut(s)	901
NlaIII	CATG	3 cut(s)	568, 643, 1061
NlaIV	GGNNCC	4 cut(s)	919, 920, 1033, 1114
NmuCI	GTSAC	2 cut(s)	67, 644
PctI	GAATGC	4 cut(s)	80, 622, 871, 1090
PdmI	GAANNNNTTC	1 cut(s)	1036
PfeI	GAWTC	2 cut(s)	6, 1082
PkrI	GCNGC	6 cut(s)	166, 409, 558, 757, 850, 853
Ppu21I	YACGTR	2 cut(s)	268, 893
PpuMI	RGGWCCY	1 cut(s)	918
Psp5II	RGGWCCY	1 cut(s)	918
PspEI	GGTNACC	1 cut(s)	644
PspN4I	GGNNCC	4 cut(s)	919, 920, 1033, 1114
PspPI	GGNCC	2 cut(s)	918, 989
PspPPI	RGGWCCY	1 cut(s)	918
PstI	CTGCAG	2 cut(s)	853, 1081
RsaI	GTAC	3 cut(s)	30, 563, 1107
RsaNI	GTAC	3 cut(s)	29, 562, 1106
SaqAI	TTAA	6 cut(s)	312, 426, 540, 552, 969, 1100
SatI	GCNGC	6 cut(s)	165, 408, 557, 756, 849, 852
Sau3AI	GATC	5 cut(s)	199, 292, 391, 703, 715
Sau96I	GGNCC	2 cut(s)	918, 989
ScrFI	CCNGG	2 cut(s)	650, 987
SfaNI	GCATC	4 cut(s)	184, 730, 742, 766
SfcI	CTRYAG	3 cut(s)	849, 855, 1077
SinI	GGWCC	1 cut(s)	918
SmlI	CTYRAG	1 cut(s)	212
SmoI	CTYRAG	1 cut(s)	212
SnaBI	TACGTA	1 cut(s)	893
Sse9I	AATT	7 cut(s)	57, 103, 114, 398, 511, 594, 1006
SsiI	CCGC	2 cut(s)	225, 362
SspI	AATATT	1 cut(s)	658
SspMI	CTAG	2 cut(s)	902, 1109
StyD4I	CCNGG	2 cut(s)	648, 985
TaaI	ACNGT	4 cut(s)	67, 73, 206, 1017
TaiI	ACGT	2 cut(s)	270, 895
TasI	AATT	7 cut(s)	57, 103, 114, 398, 511, 594, 1006
TatI	WGTACW	2 cut(s)	28, 561
TfiI	GAWTC	2 cut(s)	6, 1082
Tru1I	TTAA	6 cut(s)	312, 426, 540, 552, 969, 1100
Tru9I	TTAA	6 cut(s)	312, 426, 540, 552, 969, 1100
TscAI	CASTG	4 cut(s)	70, 91, 211, 306
TseFI	GTSAC	2 cut(s)	67, 644
TseI	GCWGC	6 cut(s)	164, 407, 556, 755, 848, 851
Tsp45I	GTSAC	2 cut(s)	67, 644
TspDTI	ATGAA	9 cut(s)	387, 504, 581, 710, 858, 1029, 1046, 1074, 1083
TspGWI	ACGGA	1 cut(s)	111
TspRI	CASTG	4 cut(s)	70, 91, 211, 306
VpaK11BI	GGWCC	1 cut(s)	918
XapI	RAATTY	1 cut(s)	1006
XmnI	GAANNNNTTC	1 cut(s)	1036
XspI	CTAG	2 cut(s)	902, 1109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.