Rh2DG035800

Belongs to the glycosyl hydrolase 17 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0013518
Physical Location & Seq
Reverse (-)
2403868 .. 2409550
5683 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG035800.1

Sequence Viewer

Length: 1155 bp
ATGGTTGATGGTGCTGTTCTGATCTTTCCAGCATCTGTGAATGTGCAAGCATTCACTGGAGCATACGGAATAAATTATGGAAGAATTGCAGATAACATTCCTTCTCCAGATAAAGTTGCTACACTTCTTAGAGCAGCAAAGATAAAGAATGTCAGGATATATGATGCTGATCACAGTGTTCTCAAGGCTTTTAGCGGGACTGGGCTTGACTTAGTGGTCGGGCTTCCAAATGGATACGTGAAAGATATGAGTGCCAATCAGGATCACGCACTGGATTGGGTTAAAGAAAATGTGCAGGCATTTCTTCCTGATACACACATCCGAGGGATTGCGGTGGGTAATGAAGTATTAGGTGGGGGTGATCTTGAATTGTGGGCAGCTCTTTTGGGTGCAGTTAAAAACATCTATAATGCAACAAAGATGCTAAAATTAGATGATGTAGTTCAGATTACCACAGCACATTCACAGGCTGTTTTTGCTAATTCATATCCTCCCTCTTCCTGTATATTTAGGGATAATGTTAAGCAGCAGTACATGAAGCCACTTTTGGAGTTCTTCTCAGAAATTGGTTCTCCCTTCTGTCTAAATGCTTACCCATTCCTTGCCTACATGAGTGATCCGGAGAATATTGATATCAACTATGCTCTTTTTCAGAAAACACAGGGGATTTATGATCAAAAAACTGATCTTCATTATGATAATATGCTTGATGCTCAGATTGATGCAGCCTATTCAGCTTTGGAAGATGCTGGTTTGAAAAAGATGGAAGTTATTATTACAGAGACAGGGTGGGCTTCCCGCGGAGATGACAATGAAGCTGCAGCTACAGTAGAGAATGCAAGGACATATAACTATAATCTACGTAAAAGGCTAGCAAAGAAGAAAGGGACCCCTCTCCGGCCACATTTTGTAGTGAAGGCATACATTTTTGCCATATTTAACGAAGACTTGAAATCCGGTGCTACTTCTGAGAGAAATTTTGGACTGTTCAAGCCTGATGGAACCATTTCATATGATATTGGGTTTCACGGACTTGTATCATCTGCAGATTCATTGCTTTCATCTTTAAAGGATAGTAGAGTTCAAGCCTGGTCTCGGTCCCAATACTTCCTATTACCAATCTCTGCGCTAGCATTTGTTCTGTTTCTTAGATGA

Protein Analysis

384

Amino Acids

42.4

Weight (kDa)

5.83

Isoelectric Point (pI)

37.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 23 - 342 6.1e-79 Glycosyl hydrolases family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013518)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26600 AT2G26600
fragaria_vesca FvH4_1g02990
malus_domestica MD02G1029300.v1.1 MD15G1170800.v1.1
prunus_persica Prupe.7G245600_v2.0.a1
pyrus_communis pycom02g02420 pycom15g15220
rosa_chinensis RchiOBHm_Chr2g0088131
rosa_laevigata RLG00000015924
rosa_multiflora Rmu_sc0003275.1_g000047
rosa_roxburghii Rroxscaffold_2G00152940
rosa_rugosa Rorug01G0481300
rosa_samantha Rh2AG036100 Rh2BG035300 Rh2CG036500 Rh2DG035800
rosa_wichuraiana Rw2G002840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 215
AccII CGCG 1 cut(s) 801
AccIII TCCGGA 1 cut(s) 619
AciI CCGC 4 cut(s) 195, 332, 799, 801
AclWI GGATC 2 cut(s) 270, 611
AcoI YGGCCR 1 cut(s) 899
AcsI RAATTY 1 cut(s) 976
AfaI GTAC 1 cut(s) 533
AfiI CCNNNNNNNGG 2 cut(s) 897, 1095
AgsI TTSAA 5 cut(s) 368, 757, 952, 991, 1085
AjnI CCWGG 1 cut(s) 1088
AjuI GAANNNNNNNTTGG 2 cut(s) 530, 562
AluBI AGCT 4 cut(s) 380, 737, 818, 824
AluI AGCT 4 cut(s) 380, 737, 818, 824
Alw26I GTCTC 2 cut(s) 776, 1098
AlwI GGATC 2 cut(s) 270, 611
AlwNI CAGNNNCTG 1 cut(s) 35
Aor13HI TCCGGA 1 cut(s) 619
AoxI GGCC 1 cut(s) 899
ApeKI GCWGC 6 cut(s) 134, 377, 526, 725, 818, 821
ApoI RAATTY 1 cut(s) 976
Asp700I GAANNNNTTC 1 cut(s) 1006
AspLEI GCGC 1 cut(s) 1129
AspS9I GGNCC 2 cut(s) 888, 1098
AsuHPI GGTGA 1 cut(s) 371
AsuNHI GCTAGC 2 cut(s) 871, 1129
AvaII GGWCC 2 cut(s) 888, 1098
BbsI GAAGAC 1 cut(s) 951
BbvI GCAGC 6 cut(s) 146, 389, 538, 737, 805, 833
BccI CCATC 3 cut(s) 2, 757, 992
BciT130I CCWGG 1 cut(s) 1090
BciVI GTATCC 1 cut(s) 227
BclI TGATCA 2 cut(s) 169, 673
BcoDI GTCTC 2 cut(s) 776, 1098
BfaI CTAG 2 cut(s) 872, 1130
BfmI CTRYAG 3 cut(s) 819, 825, 1044
BfuI GTATCC 1 cut(s) 227
BisI GCNGC 6 cut(s) 135, 378, 527, 726, 819, 822
BlsI GCNGC 6 cut(s) 136, 379, 528, 727, 820, 823
Bme1390I CCNGG 1 cut(s) 1090
Bme18I GGWCC 2 cut(s) 888, 1098
BmgT120I GGNCC 2 cut(s) 888, 1098
BmiI GGNNCC 4 cut(s) 889, 890, 1003, 1100
BmrFI CCNGG 1 cut(s) 1090
BmrI ACTGGG 1 cut(s) 210
BmsI GCATC 6 cut(s) 41, 154, 411, 700, 712, 736
BmtI GCTAGC 2 cut(s) 875, 1133
BmuI ACTGGG 1 cut(s) 210
BpiI GAAGAC 1 cut(s) 951
BplI GAGNNNNNCTC 2 cut(s) 542, 574
BpmI CTGGAG 2 cut(s) 78, 90
BpuEI CTTGAG 1 cut(s) 167
BsaAI YACGTR 2 cut(s) 238, 863
BsaBI GATNNNNATC 1 cut(s) 168
BsaI GGTCTC 1 cut(s) 1098
BsaJI CCNNGG 2 cut(s) 322, 799
BsaWI WCCGGW 2 cut(s) 619, 956
Bsc4I CCNNNNNNNGG 2 cut(s) 897, 1095
Bse1I ACTGG 3 cut(s) 61, 205, 276
Bse3DI GCAATG 1 cut(s) 1052
Bse8I GATNNNNATC 1 cut(s) 168
BseAI TCCGGA 1 cut(s) 619
BseBI CCWGG 1 cut(s) 1090
BseDI CCNNGG 2 cut(s) 322, 799
BseGI GGATG 1 cut(s) 318
BseJI GATNNNNATC 1 cut(s) 168
BseLI CCNNNNNNNGG 2 cut(s) 897, 1095
BseMI GCAATG 1 cut(s) 1052
BseMII CTCAG 3 cut(s) 573, 728, 960
BseNI ACTGG 3 cut(s) 61, 205, 276
BseXI GCAGC 6 cut(s) 146, 389, 538, 737, 805, 833
BsgI GTGCAG 2 cut(s) 314, 411
Bsh1236I CGCG 1 cut(s) 801
BshFI GGCC 1 cut(s) 901
BsiSI CCGG 3 cut(s) 620, 898, 957
BslFI GGGAC 3 cut(s) 211, 901, 1084
BslI CCNNNNNNNGG 2 cut(s) 897, 1095
BsmAI GTCTC 2 cut(s) 776, 1098
BsmFI GGGAC 3 cut(s) 211, 901, 1084
BsmI GAATGC 2 cut(s) 50, 841
BsnI GGCC 1 cut(s) 901
Bso31I GGTCTC 1 cut(s) 1098
Bsp13I TCCGGA 1 cut(s) 619
Bsp143I GATC 7 cut(s) 21, 169, 262, 361, 616, 673, 685
BspACI CCGC 4 cut(s) 195, 332, 799, 801
BspANI GGCC 1 cut(s) 901
BspCNI CTCAG 3 cut(s) 572, 727, 961
BspEI TCCGGA 1 cut(s) 619
BspFNI CGCG 1 cut(s) 801
BspLI GGNNCC 4 cut(s) 889, 890, 1003, 1100
BspMAI CTGCAG 2 cut(s) 823, 1048
BspOI GCTAGC 2 cut(s) 875, 1133
BspPI GGATC 2 cut(s) 270, 611
BspTNI GGTCTC 1 cut(s) 1098
BsrDI GCAATG 1 cut(s) 1052
BsrI ACTGG 3 cut(s) 61, 205, 276
BssECI CCNNGG 2 cut(s) 322, 799
BssMI GATC 7 cut(s) 21, 169, 262, 361, 616, 673, 685
Bst2UI CCWGG 1 cut(s) 1090
Bst4CI ACNGT 3 cut(s) 176, 829, 987
Bst6I CTCTTC 1 cut(s) 502
BstBAI YACGTR 2 cut(s) 238, 863
BstC8I GCNNGC 4 cut(s) 48, 297, 873, 1131
BstDEI CTNAG 6 cut(s) 128, 211, 559, 714, 969, 1148
BstDSI CCRYGG 1 cut(s) 799
BstF5I GGATG 1 cut(s) 318
BstFNI CGCG 1 cut(s) 801
BstHHI GCGC 1 cut(s) 1129
BstKTI GATC 7 cut(s) 24, 172, 265, 364, 619, 676, 688
BstMAI GTCTC 2 cut(s) 776, 1098
BstMBI GATC 7 cut(s) 21, 169, 262, 361, 616, 673, 685
BstMWI GCNNNNNNNGC 2 cut(s) 476, 734
BstNI CCWGG 1 cut(s) 1090
BstSCI CCNGG 1 cut(s) 1088
BstSFI CTRYAG 3 cut(s) 819, 825, 1044
BstSNI TACGTA 1 cut(s) 863
BstUI CGCG 1 cut(s) 801
BstV1I GCAGC 6 cut(s) 146, 389, 538, 737, 805, 833
BstV2I GAAGAC 1 cut(s) 951
BsuI GTATCC 1 cut(s) 227
BsuRI GGCC 1 cut(s) 901
BtgI CCRYGG 1 cut(s) 799
BtsCI GGATG 1 cut(s) 318
BtsIMutI CAGTG 3 cut(s) 54, 181, 269
Cac8I GCNNGC 4 cut(s) 48, 297, 873, 1131
CaiI CAGNNNCTG 1 cut(s) 35
CfoI GCGC 1 cut(s) 1129
Cfr13I GGNCC 2 cut(s) 888, 1098
Cfr42I CCGCGG 1 cut(s) 802
Csp6I GTAC 1 cut(s) 532
CviAII CATG 2 cut(s) 535, 610
CviQI GTAC 1 cut(s) 532
DdeI CTNAG 6 cut(s) 128, 211, 559, 714, 969, 1148
DpnI GATC 7 cut(s) 23, 171, 264, 363, 618, 675, 687
DpnII GATC 7 cut(s) 21, 169, 262, 361, 616, 673, 685
DraI TTTAAA 1 cut(s) 1068
DrdI GACNNNNNNGTC 1 cut(s) 215
DseDI GACNNNNNNGTC 1 cut(s) 215
EaeI YGGCCR 1 cut(s) 899
Eam1104I CTCTTC 1 cut(s) 502
EarI CTCTTC 1 cut(s) 502
Eco105I TACGTA 1 cut(s) 863
Eco31I GGTCTC 1 cut(s) 1098
Eco32I GATATC 1 cut(s) 634
Eco47I GGWCC 2 cut(s) 888, 1098
EcoO109I RGGNCCY 1 cut(s) 888
EcoRII CCWGG 1 cut(s) 1088
EcoRV GATATC 1 cut(s) 634
FaeI CATG 2 cut(s) 538, 613
FaqI GGGAC 3 cut(s) 211, 901, 1084
FatI CATG 2 cut(s) 534, 609
FauI CCCGC 2 cut(s) 188, 806
FauNDI CATATG 1 cut(s) 1012
FbaI TGATCA 2 cut(s) 169, 673
Fnu4HI GCNGC 6 cut(s) 135, 378, 527, 726, 819, 822
FokI GGATG 1 cut(s) 305
Fsp4HI GCNGC 6 cut(s) 135, 378, 527, 726, 819, 822
FspBI CTAG 2 cut(s) 872, 1130
GlaI GCGC 1 cut(s) 1128
GluI GCNGC 6 cut(s) 135, 378, 527, 726, 819, 822
GsuI CTGGAG 2 cut(s) 78, 90
HaeIII GGCC 1 cut(s) 901
HapII CCGG 3 cut(s) 620, 898, 957
HhaI GCGC 1 cut(s) 1129
Hin1II CATG 2 cut(s) 538, 613
Hin6I GCGC 1 cut(s) 1127
HinP1I GCGC 1 cut(s) 1127
HinfI GANTC 1 cut(s) 1049
HpaII CCGG 3 cut(s) 620, 898, 957
HphI GGTGA 1 cut(s) 371
Hpy188I TCNGA 7 cut(s) 21, 323, 447, 562, 654, 717, 970
Hpy188III TCNNGA 6 cut(s) 107, 154, 260, 308, 365, 620
HpyAV CCTTC 3 cut(s) 111, 586, 910
HpyCH4III ACNGT 3 cut(s) 176, 829, 987
HpyCH4IV ACGT 2 cut(s) 237, 862
HpyCH4V TGCA 9 cut(s) 46, 89, 295, 392, 413, 725, 821, 839, 1046
HpyF10VI GCNNNNNNNGC 2 cut(s) 476, 734
HpyF3I CTNAG 6 cut(s) 128, 211, 559, 714, 969, 1148
HpySE526I ACGT 2 cut(s) 237, 862
Hsp92II CATG 2 cut(s) 538, 613
HspAI GCGC 1 cut(s) 1127
KflI GGGWCCC 1 cut(s) 888
Kpn2I TCCGGA 1 cut(s) 619
Ksp22I TGATCA 2 cut(s) 169, 673
KspI CCGCGG 1 cut(s) 802
Kzo9I GATC 7 cut(s) 21, 169, 262, 361, 616, 673, 685
LmnI GCTCC 1 cut(s) 59
Lsp1109I GCAGC 6 cut(s) 146, 389, 538, 737, 805, 833
LweI GCATC 6 cut(s) 41, 154, 411, 700, 712, 736
MaeI CTAG 2 cut(s) 872, 1130
MaeII ACGT 2 cut(s) 237, 862
MalI GATC 7 cut(s) 23, 171, 264, 363, 618, 675, 687
MboI GATC 7 cut(s) 21, 169, 262, 361, 616, 673, 685
MboII GAAGA 8 cut(s) 93, 296, 489, 547, 680, 755, 892, 956
MluCI AATT 7 cut(s) 73, 84, 368, 428, 481, 564, 976
MnlI CCTC 4 cut(s) 317, 501, 505, 903
MroI TCCGGA 1 cut(s) 619
MroXI GAANNNNTTC 1 cut(s) 1006
MseI TTAA 5 cut(s) 282, 396, 522, 939, 1067
MspA1I CMGCKG 1 cut(s) 801
MspI CCGG 3 cut(s) 620, 898, 957
MspR9I CCNGG 1 cut(s) 1090
Mva1269I GAATGC 2 cut(s) 50, 841
MvaI CCWGG 1 cut(s) 1090
MvnI CGCG 1 cut(s) 801
MwoI GCNNNNNNNGC 2 cut(s) 476, 734
NdeI CATATG 1 cut(s) 1012
NdeII GATC 7 cut(s) 21, 169, 262, 361, 616, 673, 685
NheI GCTAGC 2 cut(s) 871, 1129
NlaIII CATG 2 cut(s) 538, 613
NlaIV GGNNCC 4 cut(s) 889, 890, 1003, 1100
PctI GAATGC 2 cut(s) 50, 841
PdmI GAANNNNTTC 1 cut(s) 1006
PfeI GAWTC 1 cut(s) 1049
PkrI GCNGC 6 cut(s) 136, 379, 528, 727, 820, 823
Ppu21I YACGTR 2 cut(s) 238, 863
PpuMI RGGWCCY 1 cut(s) 888
Psp5II RGGWCCY 1 cut(s) 888
Psp6I CCWGG 1 cut(s) 1088
PspGI CCWGG 1 cut(s) 1088
PspN4I GGNNCC 4 cut(s) 889, 890, 1003, 1100
PspPI GGNCC 2 cut(s) 888, 1098
PspPPI RGGWCCY 1 cut(s) 888
PstI CTGCAG 2 cut(s) 823, 1048
PstNI CAGNNNCTG 1 cut(s) 35
RsaI GTAC 1 cut(s) 533
RsaNI GTAC 1 cut(s) 532
SacII CCGCGG 1 cut(s) 802
SaqAI TTAA 5 cut(s) 282, 396, 522, 939, 1067
SatI GCNGC 6 cut(s) 135, 378, 527, 726, 819, 822
Sau3AI GATC 7 cut(s) 21, 169, 262, 361, 616, 673, 685
Sau96I GGNCC 2 cut(s) 888, 1098
ScrFI CCNGG 1 cut(s) 1090
SetI ASST 7 cut(s) 240, 355, 382, 739, 820, 826, 865
SfaNI GCATC 6 cut(s) 41, 154, 411, 700, 712, 736
SfcI CTRYAG 3 cut(s) 819, 825, 1044
Sfr303I CCGCGG 1 cut(s) 802
SgrBI CCGCGG 1 cut(s) 802
SinI GGWCC 2 cut(s) 888, 1098
SmlI CTYRAG 1 cut(s) 182
SmoI CTYRAG 1 cut(s) 182
SnaBI TACGTA 1 cut(s) 863
Sse9I AATT 7 cut(s) 73, 84, 368, 428, 481, 564, 976
SsiI CCGC 4 cut(s) 195, 332, 799, 801
SspI AATATT 1 cut(s) 628
SspMI CTAG 2 cut(s) 872, 1130
StyD4I CCNGG 1 cut(s) 1088
TaaI ACNGT 3 cut(s) 176, 829, 987
TaiI ACGT 2 cut(s) 240, 865
TaqII GACCGA 1 cut(s) 1086
TasI AATT 7 cut(s) 73, 84, 368, 428, 481, 564, 976
TatI WGTACW 1 cut(s) 531
TfiI GAWTC 1 cut(s) 1049
Tru1I TTAA 5 cut(s) 282, 396, 522, 939, 1067
Tru9I TTAA 5 cut(s) 282, 396, 522, 939, 1067
TscAI CASTG 3 cut(s) 61, 181, 276
TseI GCWGC 6 cut(s) 134, 377, 526, 725, 818, 821
TspDTI ATGAA 8 cut(s) 357, 474, 551, 680, 828, 999, 1041, 1050
TspGWI ACGGA 2 cut(s) 81, 1044
TspRI CASTG 3 cut(s) 61, 181, 276
VpaK11BI GGWCC 2 cut(s) 888, 1098
XapI RAATTY 1 cut(s) 976
XmnI GAANNNNTTC 1 cut(s) 1006
XspI CTAG 2 cut(s) 872, 1130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.