Rw2G002840

Belongs to the glycosyl hydrolase 17 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0013518
Physical Location & Seq
Reverse (-)
2604842 .. 2608100
3259 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G002840.1

Sequence Viewer

Length: 1185 bp
ATGAGAATCAAAAGCTTCTGCTTTTCTGTCCATGTCTTCTTGGTCTTCTTCTCTCTAATTGCATCTGTGAATGTGCAAGCATTCACTGGAGCATACGGAATAAATTATGGAAGAATTGCAGATAACATTCCTTCTCCAGATAAAGTTGCTACACTTCTTAGAGCAGCAAAGATAAAGAATGTCAGGATATATGATGCTGATCACAGTGTTCTCAAGGCTTTTAGCGGGACTGGGCTTGACTTAGTGGTCGGGCTTCCAAATGGATACGTGAAAGATATGAGTGCCAATCAGGATCACGCACTGGATTGGGTTAAAGAAAATGTGCAGGCATTTCTTCCTGATACACACATCCGAGGGATTGCGGTGGGTAATGAAGTATTAGGTGGGGGTGATCTTGAATTGTGGGCAGCTCTTTTGGGTGCAGTTAAAAACATCTATAATGCAACAAAGATGCTAAAATTAGATGATGTAGTTCAGATTACCACAGCACATTCACAGGCTGTTTTTGCTAATTCATATCCTCCCTCTTCCTGTATATTTAGGGATAATGTTAAGCAGCAGTACATGAAGCCACTTTTGGAGTTCTTCTCAGAAATTGGTTCTCCCTTCTGTCTAAATGCTTACCCATTCCTTGCCTACATGAGTGATCCGGAGAATATTGATATCAACTATGCTCTTTTTCAGAAAACACAGGGGATTTATGATCAAAAAACTGATCTTCATTATGATAATATGCTTGATGCTCAGATTGATGCAGCCTATTCAGCTTTGGAAGATGCTGGTTTGAAAAAGATGGAAGTTATTATTACAGAGACAGGGTGGGCTTCCCGCGGAGATGACAATGAAGCTGCAGCTACAGTAGAGAATGCAAGGACATATAACTATAATCTACGTAAAAGGCTAGCAAAGAAGAAAGGGACCCCTCTCCGGCCACATTTTGTAGTGAAGGCATACATTTTTGCCATATTTAACGAAGACTTGAAACCCGGCGCTACTTCTGAGAGAAATTTTGGACTGTTCAAGCCTGATGGAACCATTTCATATGATATTGGGTTTCACGGACTTGTATCATCTGCAGATTCATTGCTTTCATCTTTAAAGGATAGTAGAGTTCAAGCCTGGTCTCGGTCCCAATACTTCCTATTACCAATCTCTGCGCTAGCATTTGTTCTGTTTCTTAGATGA

Protein Analysis

394

Amino Acids

43.77

Weight (kDa)

6.46

Isoelectric Point (pI)

35.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 33 - 352 3.5e-79 Glycosyl hydrolases family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013518)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26600 AT2G26600
fragaria_vesca FvH4_1g02990
malus_domestica MD02G1029300.v1.1 MD15G1170800.v1.1
prunus_persica Prupe.7G245600_v2.0.a1
pyrus_communis pycom02g02420 pycom15g15220
rosa_chinensis RchiOBHm_Chr2g0088131
rosa_laevigata RLG00000015924
rosa_multiflora Rmu_sc0003275.1_g000047
rosa_roxburghii Rroxscaffold_2G00152940
rosa_rugosa Rorug01G0481300
rosa_samantha Rh2AG036100 Rh2BG035300 Rh2CG036500 Rh2DG035800
rosa_wichuraiana Rw2G002840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 245
AccII CGCG 1 cut(s) 831
AccIII TCCGGA 1 cut(s) 649
AciI CCGC 4 cut(s) 225, 362, 829, 831
AclWI GGATC 2 cut(s) 300, 641
AcoI YGGCCR 1 cut(s) 929
AcsI RAATTY 1 cut(s) 1006
AfaI GTAC 1 cut(s) 563
AfiI CCNNNNNNNGG 2 cut(s) 927, 1125
AgsI TTSAA 5 cut(s) 398, 787, 982, 1021, 1115
AjnI CCWGG 1 cut(s) 1118
AjuI GAANNNNNNNTTGG 2 cut(s) 560, 592
AluBI AGCT 5 cut(s) 15, 410, 767, 848, 854
AluI AGCT 5 cut(s) 15, 410, 767, 848, 854
Alw26I GTCTC 2 cut(s) 806, 1128
AlwI GGATC 2 cut(s) 300, 641
Aor13HI TCCGGA 1 cut(s) 649
AoxI GGCC 1 cut(s) 929
ApeKI GCWGC 6 cut(s) 164, 407, 556, 755, 848, 851
ApoI RAATTY 1 cut(s) 1006
Asp700I GAANNNNTTC 1 cut(s) 1036
AspLEI GCGC 2 cut(s) 992, 1159
AspS9I GGNCC 2 cut(s) 918, 1128
AsuC2I CCSGG 1 cut(s) 987
AsuHPI GGTGA 1 cut(s) 401
AsuNHI GCTAGC 2 cut(s) 901, 1159
AvaII GGWCC 2 cut(s) 918, 1128
BbsI GAAGAC 3 cut(s) 28, 37, 981
BbvI GCAGC 6 cut(s) 176, 419, 568, 767, 835, 863
BccI CCATC 2 cut(s) 787, 1022
BciT130I CCWGG 1 cut(s) 1120
BciVI GTATCC 1 cut(s) 257
BclI TGATCA 2 cut(s) 199, 703
BcnI CCSGG 1 cut(s) 987
BcoDI GTCTC 2 cut(s) 806, 1128
BfaI CTAG 2 cut(s) 902, 1160
BfmI CTRYAG 3 cut(s) 849, 855, 1074
BfoI RGCGCY 1 cut(s) 993
BfuI GTATCC 1 cut(s) 257
BisI GCNGC 6 cut(s) 165, 408, 557, 756, 849, 852
BlsI GCNGC 6 cut(s) 166, 409, 558, 757, 850, 853
Bme1390I CCNGG 2 cut(s) 987, 1120
Bme18I GGWCC 2 cut(s) 918, 1128
BmgT120I GGNCC 2 cut(s) 918, 1128
BmiI GGNNCC 4 cut(s) 919, 920, 1033, 1130
BmrFI CCNGG 2 cut(s) 987, 1120
BmrI ACTGGG 1 cut(s) 240
BmsI GCATC 6 cut(s) 71, 184, 441, 730, 742, 766
BmtI GCTAGC 2 cut(s) 905, 1163
BmuI ACTGGG 1 cut(s) 240
BpiI GAAGAC 3 cut(s) 28, 37, 981
BplI GAGNNNNNCTC 2 cut(s) 572, 604
BpmI CTGGAG 2 cut(s) 108, 120
BpuEI CTTGAG 1 cut(s) 197
BpuMI CCSGG 1 cut(s) 987
BsaAI YACGTR 2 cut(s) 268, 893
BsaBI GATNNNNATC 1 cut(s) 198
BsaI GGTCTC 1 cut(s) 1128
BsaJI CCNNGG 2 cut(s) 352, 829
BsaWI WCCGGW 1 cut(s) 649
Bsc4I CCNNNNNNNGG 2 cut(s) 927, 1125
Bse1I ACTGG 3 cut(s) 91, 235, 306
Bse3DI GCAATG 1 cut(s) 1082
Bse8I GATNNNNATC 1 cut(s) 198
BseAI TCCGGA 1 cut(s) 649
BseBI CCWGG 1 cut(s) 1120
BseDI CCNNGG 2 cut(s) 352, 829
BseGI GGATG 1 cut(s) 348
BseJI GATNNNNATC 1 cut(s) 198
BseLI CCNNNNNNNGG 2 cut(s) 927, 1125
BseMI GCAATG 1 cut(s) 1082
BseMII CTCAG 3 cut(s) 603, 758, 990
BseNI ACTGG 3 cut(s) 91, 235, 306
BseXI GCAGC 6 cut(s) 176, 419, 568, 767, 835, 863
BsgI GTGCAG 2 cut(s) 344, 441
Bsh1236I CGCG 1 cut(s) 831
BshFI GGCC 1 cut(s) 931
BsiSI CCGG 3 cut(s) 650, 928, 987
BslFI GGGAC 3 cut(s) 241, 931, 1114
BslI CCNNNNNNNGG 2 cut(s) 927, 1125
BsmAI GTCTC 2 cut(s) 806, 1128
BsmFI GGGAC 3 cut(s) 241, 931, 1114
BsmI GAATGC 2 cut(s) 80, 871
BsnI GGCC 1 cut(s) 931
Bso31I GGTCTC 1 cut(s) 1128
Bsp13I TCCGGA 1 cut(s) 649
Bsp143I GATC 6 cut(s) 199, 292, 391, 646, 703, 715
BspACI CCGC 4 cut(s) 225, 362, 829, 831
BspANI GGCC 1 cut(s) 931
BspCNI CTCAG 3 cut(s) 602, 757, 991
BspEI TCCGGA 1 cut(s) 649
BspFNI CGCG 1 cut(s) 831
BspLI GGNNCC 4 cut(s) 919, 920, 1033, 1130
BspMAI CTGCAG 2 cut(s) 853, 1078
BspOI GCTAGC 2 cut(s) 905, 1163
BspPI GGATC 2 cut(s) 300, 641
BspTNI GGTCTC 1 cut(s) 1128
BsrDI GCAATG 1 cut(s) 1082
BsrI ACTGG 3 cut(s) 91, 235, 306
BssECI CCNNGG 2 cut(s) 352, 829
BssMI GATC 6 cut(s) 199, 292, 391, 646, 703, 715
Bst2UI CCWGG 1 cut(s) 1120
Bst4CI ACNGT 3 cut(s) 206, 859, 1017
Bst6I CTCTTC 1 cut(s) 532
BstBAI YACGTR 2 cut(s) 268, 893
BstC8I GCNNGC 4 cut(s) 78, 327, 903, 1161
BstDEI CTNAG 6 cut(s) 158, 241, 589, 744, 999, 1178
BstDSI CCRYGG 1 cut(s) 829
BstF5I GGATG 1 cut(s) 348
BstFNI CGCG 1 cut(s) 831
BstH2I RGCGCY 1 cut(s) 993
BstHHI GCGC 2 cut(s) 992, 1159
BstKTI GATC 6 cut(s) 202, 295, 394, 649, 706, 718
BstMAI GTCTC 2 cut(s) 806, 1128
BstMBI GATC 6 cut(s) 199, 292, 391, 646, 703, 715
BstMWI GCNNNNNNNGC 2 cut(s) 506, 764
BstNI CCWGG 1 cut(s) 1120
BstSCI CCNGG 2 cut(s) 985, 1118
BstSFI CTRYAG 3 cut(s) 849, 855, 1074
BstSNI TACGTA 1 cut(s) 893
BstUI CGCG 1 cut(s) 831
BstV1I GCAGC 6 cut(s) 176, 419, 568, 767, 835, 863
BstV2I GAAGAC 3 cut(s) 28, 37, 981
BsuI GTATCC 1 cut(s) 257
BsuRI GGCC 1 cut(s) 931
BtgI CCRYGG 1 cut(s) 829
BtsCI GGATG 1 cut(s) 348
BtsIMutI CAGTG 3 cut(s) 84, 211, 299
Cac8I GCNNGC 4 cut(s) 78, 327, 903, 1161
CfoI GCGC 2 cut(s) 992, 1159
Cfr13I GGNCC 2 cut(s) 918, 1128
Cfr42I CCGCGG 1 cut(s) 832
Csp6I GTAC 1 cut(s) 562
CviAII CATG 3 cut(s) 32, 565, 640
CviQI GTAC 1 cut(s) 562
DdeI CTNAG 6 cut(s) 158, 241, 589, 744, 999, 1178
DpnI GATC 6 cut(s) 201, 294, 393, 648, 705, 717
DpnII GATC 6 cut(s) 199, 292, 391, 646, 703, 715
DraI TTTAAA 1 cut(s) 1098
DrdI GACNNNNNNGTC 1 cut(s) 245
DseDI GACNNNNNNGTC 1 cut(s) 245
EaeI YGGCCR 1 cut(s) 929
Eam1104I CTCTTC 1 cut(s) 532
EarI CTCTTC 1 cut(s) 532
Eco105I TACGTA 1 cut(s) 893
Eco31I GGTCTC 1 cut(s) 1128
Eco32I GATATC 1 cut(s) 664
Eco47I GGWCC 2 cut(s) 918, 1128
EcoO109I RGGNCCY 1 cut(s) 918
EcoRII CCWGG 1 cut(s) 1118
EcoRV GATATC 1 cut(s) 664
FaeI CATG 3 cut(s) 35, 568, 643
FaqI GGGAC 3 cut(s) 241, 931, 1114
FatI CATG 3 cut(s) 31, 564, 639
FauI CCCGC 2 cut(s) 218, 836
FauNDI CATATG 1 cut(s) 1042
FbaI TGATCA 2 cut(s) 199, 703
Fnu4HI GCNGC 6 cut(s) 165, 408, 557, 756, 849, 852
FokI GGATG 1 cut(s) 335
Fsp4HI GCNGC 6 cut(s) 165, 408, 557, 756, 849, 852
FspBI CTAG 2 cut(s) 902, 1160
GlaI GCGC 2 cut(s) 991, 1158
GluI GCNGC 6 cut(s) 165, 408, 557, 756, 849, 852
GsuI CTGGAG 2 cut(s) 108, 120
HaeII RGCGCY 1 cut(s) 993
HaeIII GGCC 1 cut(s) 931
HapII CCGG 3 cut(s) 650, 928, 987
HhaI GCGC 2 cut(s) 992, 1159
Hin1II CATG 3 cut(s) 35, 568, 643
Hin6I GCGC 2 cut(s) 990, 1157
HinP1I GCGC 2 cut(s) 990, 1157
HindIII AAGCTT 1 cut(s) 13
HinfI GANTC 2 cut(s) 6, 1079
HpaII CCGG 3 cut(s) 650, 928, 987
HphI GGTGA 1 cut(s) 401
Hpy188I TCNGA 6 cut(s) 353, 477, 592, 684, 747, 1000
Hpy188III TCNNGA 6 cut(s) 137, 184, 290, 338, 395, 650
HpyAV CCTTC 3 cut(s) 141, 616, 940
HpyCH4III ACNGT 3 cut(s) 206, 859, 1017
HpyCH4IV ACGT 2 cut(s) 267, 892
HpyF10VI GCNNNNNNNGC 2 cut(s) 506, 764
HpyF3I CTNAG 6 cut(s) 158, 241, 589, 744, 999, 1178
HpySE526I ACGT 2 cut(s) 267, 892
Hsp92II CATG 3 cut(s) 35, 568, 643
HspAI GCGC 2 cut(s) 990, 1157
KflI GGGWCCC 1 cut(s) 918
Kpn2I TCCGGA 1 cut(s) 649
Ksp22I TGATCA 2 cut(s) 199, 703
KspI CCGCGG 1 cut(s) 832
Kzo9I GATC 6 cut(s) 199, 292, 391, 646, 703, 715
LmnI GCTCC 1 cut(s) 89
Lsp1109I GCAGC 6 cut(s) 176, 419, 568, 767, 835, 863
LweI GCATC 6 cut(s) 71, 184, 441, 730, 742, 766
MaeI CTAG 2 cut(s) 902, 1160
MaeII ACGT 2 cut(s) 267, 892
MalI GATC 6 cut(s) 201, 294, 393, 648, 705, 717
MboI GATC 6 cut(s) 199, 292, 391, 646, 703, 715
MluCI AATT 8 cut(s) 57, 103, 114, 398, 458, 511, 594, 1006
MnlI CCTC 4 cut(s) 347, 531, 535, 933
MroI TCCGGA 1 cut(s) 649
MroXI GAANNNNTTC 1 cut(s) 1036
MseI TTAA 5 cut(s) 312, 426, 552, 969, 1097
MspA1I CMGCKG 1 cut(s) 831
MspI CCGG 3 cut(s) 650, 928, 987
MspR9I CCNGG 2 cut(s) 987, 1120
Mva1269I GAATGC 2 cut(s) 80, 871
MvaI CCWGG 1 cut(s) 1120
MvnI CGCG 1 cut(s) 831
MwoI GCNNNNNNNGC 2 cut(s) 506, 764
NciI CCSGG 1 cut(s) 987
NdeI CATATG 1 cut(s) 1042
NdeII GATC 6 cut(s) 199, 292, 391, 646, 703, 715
NheI GCTAGC 2 cut(s) 901, 1159
NlaIII CATG 3 cut(s) 35, 568, 643
NlaIV GGNNCC 4 cut(s) 919, 920, 1033, 1130
PctI GAATGC 2 cut(s) 80, 871
PdmI GAANNNNTTC 1 cut(s) 1036
PfeI GAWTC 2 cut(s) 6, 1079
PkrI GCNGC 6 cut(s) 166, 409, 558, 757, 850, 853
Ppu21I YACGTR 2 cut(s) 268, 893
PpuMI RGGWCCY 1 cut(s) 918
Psp5II RGGWCCY 1 cut(s) 918
Psp6I CCWGG 1 cut(s) 1118
PspGI CCWGG 1 cut(s) 1118
PspN4I GGNNCC 4 cut(s) 919, 920, 1033, 1130
PspPI GGNCC 2 cut(s) 918, 1128
PspPPI RGGWCCY 1 cut(s) 918
PstI CTGCAG 2 cut(s) 853, 1078
RsaI GTAC 1 cut(s) 563
RsaNI GTAC 1 cut(s) 562
SacII CCGCGG 1 cut(s) 832
SaqAI TTAA 5 cut(s) 312, 426, 552, 969, 1097
SatI GCNGC 6 cut(s) 165, 408, 557, 756, 849, 852
Sau3AI GATC 6 cut(s) 199, 292, 391, 646, 703, 715
Sau96I GGNCC 2 cut(s) 918, 1128
ScrFI CCNGG 2 cut(s) 987, 1120
SetI ASST 8 cut(s) 17, 270, 385, 412, 769, 850, 856, 895
SfaNI GCATC 6 cut(s) 71, 184, 441, 730, 742, 766
SfcI CTRYAG 3 cut(s) 849, 855, 1074
Sfr303I CCGCGG 1 cut(s) 832
SgrBI CCGCGG 1 cut(s) 832
SinI GGWCC 2 cut(s) 918, 1128
SmlI CTYRAG 1 cut(s) 212
SmoI CTYRAG 1 cut(s) 212
SnaBI TACGTA 1 cut(s) 893
Sse9I AATT 8 cut(s) 57, 103, 114, 398, 458, 511, 594, 1006
SsiI CCGC 4 cut(s) 225, 362, 829, 831
SspI AATATT 1 cut(s) 658
SspMI CTAG 2 cut(s) 902, 1160
StyD4I CCNGG 2 cut(s) 985, 1118
TaaI ACNGT 3 cut(s) 206, 859, 1017
TaiI ACGT 2 cut(s) 270, 895
TaqII GACCGA 1 cut(s) 1116
TasI AATT 8 cut(s) 57, 103, 114, 398, 458, 511, 594, 1006
TatI WGTACW 1 cut(s) 561
TfiI GAWTC 2 cut(s) 6, 1079
Tru1I TTAA 5 cut(s) 312, 426, 552, 969, 1097
Tru9I TTAA 5 cut(s) 312, 426, 552, 969, 1097
TscAI CASTG 3 cut(s) 91, 211, 306
TseI GCWGC 6 cut(s) 164, 407, 556, 755, 848, 851
TspDTI ATGAA 8 cut(s) 387, 504, 581, 710, 858, 1029, 1071, 1080
TspGWI ACGGA 2 cut(s) 111, 1074
TspRI CASTG 3 cut(s) 91, 211, 306
VpaK11BI GGWCC 2 cut(s) 918, 1128
XapI RAATTY 1 cut(s) 1006
XmnI GAANNNNTTC 1 cut(s) 1036
XspI CTAG 2 cut(s) 902, 1160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.