methyl-CpG-binding domain-containing protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 820 |
| AccII | CGCG | 2 cut(s) | 51, 825 |
| AciI | CCGC | 3 cut(s) | 271, 823, 1036 |
| AclWI | GGATC | 2 cut(s) | 45, 821 |
| AcoI | YGGCCR | 1 cut(s) | 24 |
| AcsI | RAATTY | 3 cut(s) | 278, 604, 722 |
| AcuI | CTGAAG | 1 cut(s) | 192 |
| AfaI | GTAC | 1 cut(s) | 821 |
| AfeI | AGCGCT | 1 cut(s) | 884 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 60, 227, 407, 836 |
| AflIII | ACRYGT | 1 cut(s) | 613 |
| AgsI | TTSAA | 4 cut(s) | 277, 699, 945, 1055 |
| AjnI | CCWGG | 2 cut(s) | 552, 924 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 95, 127 |
| AluBI | AGCT | 6 cut(s) | 342, 467, 575, 788, 863, 1049 |
| AluI | AGCT | 6 cut(s) | 342, 467, 575, 788, 863, 1049 |
| Alw26I | GTCTC | 1 cut(s) | 101 |
| AlwI | GGATC | 2 cut(s) | 45, 821 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 170, 803 |
| Aor51HI | AGCGCT | 1 cut(s) | 884 |
| AoxI | GGCC | 2 cut(s) | 24, 509 |
| ApeKI | GCWGC | 4 cut(s) | 292, 488, 575, 880 |
| ApoI | RAATTY | 3 cut(s) | 278, 604, 722 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 615 |
| AspLEI | GCGC | 3 cut(s) | 53, 233, 885 |
| AspS9I | GGNCC | 3 cut(s) | 7, 677, 922 |
| AsuC2I | CCSGG | 3 cut(s) | 23, 221, 285 |
| AsuHPI | GGTGA | 1 cut(s) | 941 |
| AsuII | TTCGAA | 1 cut(s) | 326 |
| AvaII | GGWCC | 3 cut(s) | 7, 677, 922 |
| AxyI | CCTNAGG | 1 cut(s) | 402 |
| BanII | GRGCYC | 1 cut(s) | 1045 |
| BbsI | GAAGAC | 2 cut(s) | 243, 342 |
| BbvI | GCAGC | 4 cut(s) | 304, 475, 562, 892 |
| BccI | CCATC | 3 cut(s) | 401, 698, 913 |
| BceAI | ACGGC | 1 cut(s) | 11 |
| BciT130I | CCWGG | 2 cut(s) | 554, 926 |
| BciVI | GTATCC | 1 cut(s) | 1072 |
| BcnI | CCSGG | 3 cut(s) | 23, 221, 285 |
| BcoDI | GTCTC | 1 cut(s) | 101 |
| BfaI | CTAG | 1 cut(s) | 620 |
| BfmI | CTRYAG | 1 cut(s) | 447 |
| BfoI | RGCGCY | 1 cut(s) | 886 |
| BfuAI | ACCTGC | 1 cut(s) | 820 |
| BfuI | GTATCC | 1 cut(s) | 1072 |
| BisI | GCNGC | 4 cut(s) | 293, 489, 576, 881 |
| BlsI | GCNGC | 4 cut(s) | 294, 490, 577, 882 |
| Bme1390I | CCNGG | 5 cut(s) | 23, 221, 285, 554, 926 |
| Bme18I | GGWCC | 3 cut(s) | 7, 677, 922 |
| BmgT120I | GGNCC | 3 cut(s) | 7, 677, 922 |
| BmiI | GGNNCC | 2 cut(s) | 9, 1044 |
| BmrFI | CCNGG | 5 cut(s) | 23, 221, 285, 554, 926 |
| BmsI | GCATC | 3 cut(s) | 385, 394, 552 |
| BpiI | GAAGAC | 2 cut(s) | 243, 342 |
| BpmI | CTGGAG | 1 cut(s) | 1029 |
| Bpu14I | TTCGAA | 1 cut(s) | 326 |
| BpuEI | CTTGAG | 1 cut(s) | 619 |
| BpuMI | CCSGG | 3 cut(s) | 23, 221, 285 |
| BsaJI | CCNNGG | 2 cut(s) | 284, 925 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 754, 784 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 60, 227, 407, 836 |
| Bse1I | ACTGG | 3 cut(s) | 87, 679, 808 |
| Bse21I | CCTNAGG | 1 cut(s) | 402 |
| BseBI | CCWGG | 2 cut(s) | 554, 926 |
| BseDI | CCNNGG | 2 cut(s) | 284, 925 |
| BseGI | GGATG | 4 cut(s) | 75, 91, 412, 552 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 60, 227, 407, 836 |
| BseMII | CTCAG | 3 cut(s) | 393, 459, 771 |
| BseNI | ACTGG | 3 cut(s) | 87, 679, 808 |
| BseX3I | CGGCCG | 1 cut(s) | 24 |
| BseXI | GCAGC | 4 cut(s) | 304, 475, 562, 892 |
| BsgI | GTGCAG | 2 cut(s) | 816, 924 |
| Bsh1236I | CGCG | 2 cut(s) | 51, 825 |
| Bsh1285I | CGRYCG | 1 cut(s) | 27 |
| BshFI | GGCC | 2 cut(s) | 26, 511 |
| BsiEI | CGRYCG | 1 cut(s) | 27 |
| BsiSI | CCGG | 3 cut(s) | 23, 221, 284 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 60, 227, 407, 836 |
| BsmAI | GTCTC | 1 cut(s) | 101 |
| BsmBI | CGTCTC | 1 cut(s) | 101 |
| BsnI | GGCC | 2 cut(s) | 26, 511 |
| Bsp119I | TTCGAA | 1 cut(s) | 326 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1045 |
| Bsp143I | GATC | 4 cut(s) | 37, 751, 826, 980 |
| BspACI | CCGC | 3 cut(s) | 271, 823, 1036 |
| BspANI | GGCC | 2 cut(s) | 26, 511 |
| BspCNI | CTCAG | 3 cut(s) | 394, 460, 772 |
| BspFNI | CGCG | 2 cut(s) | 51, 825 |
| BspHI | TCATGA | 1 cut(s) | 391 |
| BspLI | GGNNCC | 2 cut(s) | 9, 1044 |
| BspMAI | CTGCAG | 1 cut(s) | 451 |
| BspMI | ACCTGC | 1 cut(s) | 820 |
| BspPI | GGATC | 2 cut(s) | 45, 821 |
| BspT104I | TTCGAA | 1 cut(s) | 326 |
| BsrI | ACTGG | 3 cut(s) | 87, 679, 808 |
| BssECI | CCNNGG | 2 cut(s) | 284, 925 |
| BssMI | GATC | 4 cut(s) | 37, 751, 826, 980 |
| Bst2UI | CCWGG | 2 cut(s) | 554, 926 |
| Bst6I | CTCTTC | 7 cut(s) | 59, 93, 531, 536, 552, 971, 1065 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 485 |
| BstBI | TTCGAA | 1 cut(s) | 326 |
| BstC8I | GCNNGC | 3 cut(s) | 465, 498, 648 |
| BstDEI | CTNAG | 3 cut(s) | 402, 468, 780 |
| BstF5I | GGATG | 4 cut(s) | 75, 91, 412, 552 |
| BstFNI | CGCG | 2 cut(s) | 51, 825 |
| BstH2I | RGCGCY | 1 cut(s) | 886 |
| BstHHI | GCGC | 3 cut(s) | 53, 233, 885 |
| BstKTI | GATC | 4 cut(s) | 40, 754, 829, 983 |
| BstMAI | GTCTC | 1 cut(s) | 101 |
| BstMBI | GATC | 4 cut(s) | 37, 751, 826, 980 |
| BstMCI | CGRYCG | 1 cut(s) | 27 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 48, 485, 497, 794 |
| BstNI | CCWGG | 2 cut(s) | 554, 926 |
| BstSCI | CCNGG | 5 cut(s) | 21, 219, 283, 552, 924 |
| BstSFI | CTRYAG | 1 cut(s) | 447 |
| BstUI | CGCG | 2 cut(s) | 51, 825 |
| BstV1I | GCAGC | 4 cut(s) | 304, 475, 562, 892 |
| BstV2I | GAAGAC | 2 cut(s) | 243, 342 |
| BstZI | CGGCCG | 1 cut(s) | 24 |
| Bsu36I | CCTNAGG | 1 cut(s) | 402 |
| BsuI | GTATCC | 1 cut(s) | 1072 |
| BsuRI | GGCC | 2 cut(s) | 26, 511 |
| BtsCI | GGATG | 4 cut(s) | 75, 91, 412, 552 |
| BtsI | GCAGTG | 1 cut(s) | 456 |
| BtsIMutI | CAGTG | 1 cut(s) | 456 |
| BveI | ACCTGC | 1 cut(s) | 820 |
| Cac8I | GCNNGC | 3 cut(s) | 465, 498, 648 |
| CaiI | CAGNNNCTG | 2 cut(s) | 170, 803 |
| CciI | TCATGA | 1 cut(s) | 391 |
| CfoI | GCGC | 3 cut(s) | 53, 233, 885 |
| Cfr13I | GGNCC | 3 cut(s) | 7, 677, 922 |
| Csp6I | GTAC | 1 cut(s) | 820 |
| CviAII | CATG | 2 cut(s) | 392, 505 |
| CviQI | GTAC | 1 cut(s) | 820 |
| DdeI | CTNAG | 3 cut(s) | 402, 468, 780 |
| DpnI | GATC | 4 cut(s) | 39, 753, 828, 982 |
| DpnII | GATC | 4 cut(s) | 37, 751, 826, 980 |
| DraI | TTTAAA | 1 cut(s) | 868 |
| EaeI | YGGCCR | 1 cut(s) | 24 |
| EagI | CGGCCG | 1 cut(s) | 24 |
| Eam1104I | CTCTTC | 7 cut(s) | 59, 93, 531, 536, 552, 971, 1065 |
| EarI | CTCTTC | 7 cut(s) | 59, 93, 531, 536, 552, 971, 1065 |
| EclXI | CGGCCG | 1 cut(s) | 24 |
| Eco24I | GRGCYC | 1 cut(s) | 1045 |
| Eco47I | GGWCC | 3 cut(s) | 7, 677, 922 |
| Eco47III | AGCGCT | 1 cut(s) | 884 |
| Eco52I | CGGCCG | 1 cut(s) | 24 |
| Eco57I | CTGAAG | 1 cut(s) | 192 |
| Eco81I | CCTNAGG | 1 cut(s) | 402 |
| EcoO109I | RGGNCCY | 1 cut(s) | 7 |
| EcoRI | GAATTC | 1 cut(s) | 722 |
| EcoRII | CCWGG | 2 cut(s) | 552, 924 |
| EcoT38I | GRGCYC | 1 cut(s) | 1045 |
| Esp3I | CGTCTC | 1 cut(s) | 101 |
| FaeI | CATG | 2 cut(s) | 395, 508 |
| FaiI | YATR | 9 cut(s) | 159, 393, 506, 660, 672, 715, 849, 939, 1012 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 114, 146, 549, 581 |
| FatI | CATG | 2 cut(s) | 391, 504 |
| Fnu4HI | GCNGC | 4 cut(s) | 293, 489, 576, 881 |
| FokI | GGATG | 4 cut(s) | 82, 98, 419, 559 |
| FriOI | GRGCYC | 1 cut(s) | 1045 |
| Fsp4HI | GCNGC | 4 cut(s) | 293, 489, 576, 881 |
| FspBI | CTAG | 1 cut(s) | 620 |
| GlaI | GCGC | 3 cut(s) | 52, 232, 884 |
| GluI | GCNGC | 4 cut(s) | 293, 489, 576, 881 |
| GsuI | CTGGAG | 1 cut(s) | 1029 |
| HaeII | RGCGCY | 1 cut(s) | 886 |
| HaeIII | GGCC | 2 cut(s) | 26, 511 |
| HapII | CCGG | 3 cut(s) | 23, 221, 284 |
| HhaI | GCGC | 3 cut(s) | 53, 233, 885 |
| Hin1II | CATG | 2 cut(s) | 395, 508 |
| Hin6I | GCGC | 3 cut(s) | 51, 231, 883 |
| HinP1I | GCGC | 3 cut(s) | 51, 231, 883 |
| HindIII | AAGCTT | 1 cut(s) | 861 |
| HinfI | GANTC | 2 cut(s) | 118, 941 |
| HpaII | CCGG | 3 cut(s) | 23, 221, 284 |
| HphI | GGTGA | 1 cut(s) | 941 |
| Hpy166II | GTNNAC | 1 cut(s) | 680 |
| Hpy188I | TCNGA | 2 cut(s) | 751, 1069 |
| Hpy188III | TCNNGA | 9 cut(s) | 35, 115, 122, 392, 401, 569, 719, 779, 1052 |
| Hpy8I | GTNNAC | 1 cut(s) | 680 |
| HpyAV | CCTTC | 3 cut(s) | 221, 407, 524 |
| HpyCH4IV | ACGT | 4 cut(s) | 110, 613, 688, 1030 |
| HpyCH4V | TGCA | 7 cut(s) | 449, 496, 658, 797, 851, 905, 1028 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 48, 485, 497, 794 |
| HpyF3I | CTNAG | 3 cut(s) | 402, 468, 780 |
| HpySE526I | ACGT | 4 cut(s) | 110, 613, 688, 1030 |
| Hsp92II | CATG | 2 cut(s) | 395, 508 |
| HspAI | GCGC | 3 cut(s) | 51, 231, 883 |
| Kzo9I | GATC | 4 cut(s) | 37, 751, 826, 980 |
| LmnI | GCTCC | 4 cut(s) | 347, 403, 775, 1048 |
| Lsp1109I | GCAGC | 4 cut(s) | 304, 475, 562, 892 |
| LweI | GCATC | 3 cut(s) | 385, 394, 552 |
| MaeI | CTAG | 1 cut(s) | 620 |
| MaeII | ACGT | 4 cut(s) | 110, 613, 688, 1030 |
| MaeIII | GTNAC | 3 cut(s) | 78, 707, 799 |
| MalI | GATC | 4 cut(s) | 39, 753, 828, 982 |
| MboI | GATC | 4 cut(s) | 37, 751, 826, 980 |
| MfeI | CAATTG | 1 cut(s) | 651 |
| MhlI | GDGCHC | 1 cut(s) | 1045 |
| MluCI | AATT | 7 cut(s) | 278, 588, 604, 651, 722, 870, 945 |
| MroXI | GAANNNNTTC | 1 cut(s) | 615 |
| MseI | TTAA | 3 cut(s) | 132, 639, 867 |
| MslI | CAYNNNNRTG | 2 cut(s) | 390, 393 |
| MspI | CCGG | 3 cut(s) | 23, 221, 284 |
| MspR9I | CCNGG | 5 cut(s) | 23, 221, 285, 554, 926 |
| MunI | CAATTG | 1 cut(s) | 651 |
| MvaI | CCWGG | 2 cut(s) | 554, 926 |
| MvnI | CGCG | 2 cut(s) | 51, 825 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 48, 485, 497, 794 |
| NciI | CCSGG | 3 cut(s) | 23, 221, 285 |
| NdeII | GATC | 4 cut(s) | 37, 751, 826, 980 |
| NlaIII | CATG | 2 cut(s) | 395, 508 |
| NlaIV | GGNNCC | 2 cut(s) | 9, 1044 |
| NspV | TTCGAA | 1 cut(s) | 326 |
| PagI | TCATGA | 1 cut(s) | 391 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 102 |
| PdmI | GAANNNNTTC | 1 cut(s) | 615 |
| PfeI | GAWTC | 2 cut(s) | 118, 941 |
| PkrI | GCNGC | 4 cut(s) | 294, 490, 577, 882 |
| PpuMI | RGGWCCY | 1 cut(s) | 7 |
| Psp5II | RGGWCCY | 1 cut(s) | 7 |
| Psp6I | CCWGG | 2 cut(s) | 552, 924 |
| PspGI | CCWGG | 2 cut(s) | 552, 924 |
| PspN4I | GGNNCC | 2 cut(s) | 9, 1044 |
| PspPI | GGNCC | 3 cut(s) | 7, 677, 922 |
| PspPPI | RGGWCCY | 1 cut(s) | 7 |
| PstI | CTGCAG | 1 cut(s) | 451 |
| PstNI | CAGNNNCTG | 2 cut(s) | 170, 803 |
| RsaI | GTAC | 1 cut(s) | 821 |
| RsaNI | GTAC | 1 cut(s) | 820 |
| RseI | CAYNNNNRTG | 2 cut(s) | 390, 393 |
| SaqAI | TTAA | 3 cut(s) | 132, 639, 867 |
| SatI | GCNGC | 4 cut(s) | 293, 489, 576, 881 |
| Sau3AI | GATC | 4 cut(s) | 37, 751, 826, 980 |
| Sau96I | GGNCC | 3 cut(s) | 7, 677, 922 |
| ScrFI | CCNGG | 5 cut(s) | 23, 221, 285, 554, 926 |
| SduI | GDGCHC | 1 cut(s) | 1045 |
| SfaNI | GCATC | 3 cut(s) | 385, 394, 552 |
| SfcI | CTRYAG | 1 cut(s) | 447 |
| SfuI | TTCGAA | 1 cut(s) | 326 |
| SinI | GGWCC | 3 cut(s) | 7, 677, 922 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 390, 393 |
| SmlI | CTYRAG | 1 cut(s) | 598 |
| SmoI | CTYRAG | 1 cut(s) | 598 |
| Sse9I | AATT | 7 cut(s) | 278, 588, 604, 651, 722, 870, 945 |
| SsiI | CCGC | 3 cut(s) | 271, 823, 1036 |
| SspMI | CTAG | 1 cut(s) | 620 |
| StyD4I | CCNGG | 5 cut(s) | 21, 219, 283, 552, 924 |
| TaiI | ACGT | 4 cut(s) | 113, 616, 691, 1033 |
| TaqI | TCGA | 4 cut(s) | 96, 201, 326, 1018 |
| TasI | AATT | 7 cut(s) | 278, 588, 604, 651, 722, 870, 945 |
| TfiI | GAWTC | 2 cut(s) | 118, 941 |
| Tru1I | TTAA | 3 cut(s) | 132, 639, 867 |
| Tru9I | TTAA | 3 cut(s) | 132, 639, 867 |
| TscAI | CASTG | 1 cut(s) | 456 |
| TseI | GCWGC | 4 cut(s) | 292, 488, 575, 880 |
| TspDTI | ATGAA | 4 cut(s) | 102, 174, 219, 366 |
| TspGWI | ACGGA | 1 cut(s) | 274 |
| TspRI | CASTG | 1 cut(s) | 456 |
| VpaK11BI | GGWCC | 3 cut(s) | 7, 677, 922 |
| XapI | RAATTY | 3 cut(s) | 278, 604, 722 |
| XmnI | GAANNNNTTC | 1 cut(s) | 615 |
| XspI | CTAG | 1 cut(s) | 620 |