Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001397

Physical Location & Seq

Genomic Coordinates Forward (+)

17020400 .. 17020792

Gene Structure 393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00395860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGAGATCATATTTACGGCTCCAATGGAGAGGAGATCTCCAACAGAAAAACAATGGAACAATACCGAAGGCACACTCGGTGGCCCTTCGGTGTCGGAGTTTGATTGGGGCACCGGTGAGACCCCAAGGAGATTGGCTAGGATTAGTGAGAAGGTCAAGGCAACTCCATCCCCAGAGTGATCCCCAAAGAAGCGAAGCGAGAAAAACATCGGCTTCGAAGAAGGATAGCAAAGAAAAGGAAGCTGCTCCTCAAGAAACCGAGGGGACAAAAGTTAGTCATGTGCAAGATGCTGATAAAGCCGTGAAGGATAACGATACCGAGATGGAAAAGGCTGATGTGAAGGAAAACCAAGATGAGGATAAAGTACAAGATGCAGATACCAAGGCGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008327 GO:0036094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044444 GO:0044464 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBD

Protein Analysis

130

Amino Acids

14.68

Weight (kDa)

9.24

Isoelectric Point (pI)

56.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001397)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15790 AT3G15790 AT3G15790
fragaria_vesca	FvH4_1g03020 FvH4_1g03020 FvH4_1g03020 FvH4_1g03020 FvH4_6g29820 FvH4_6g29820 FvH4_6g29820 FvH4_6g29820 FvH4_6g29820 FvH4_6g29820
malus_domestica	MD00G1123000.v1.1 MD02G1029600.v1.1 MD15G1171000.v1.1 MD17G1210700.v1.1
prunus_persica	Prupe.3G086000_v2.0.a1 Prupe.7G245300_v2.0.a1
pyrus_communis	pycom02g02450 pycom09g14100 pycom15g15250 pycom17g21570
rosa_chinensis	RchiOBHm_Chr2g0088151 RchiOBHm_Chr2g0135641
rosa_laevigata	RLG00000015926 RLG00000019474
rosa_multiflora	Rmu_co8260895.1_g000001 Rmu_sc0002398.1_g000036 Rmu_sc0003275.1_g000050
rosa_roxburghii	Rroxscaffold_2G00109020 Rroxscaffold_2G00152920 Rroxscaffold_6G00395860 Rroxscaffold_7G00180210
rosa_rugosa	Rorug01G0481300 Rorug02G0325200
rosa_samantha	Rh2AG036300 Rh2AG376800 Rh2BG035500 Rh2BG076400 Rh2BG383100 Rh2CG036700 Rh2CG078600 Rh2CG362500 Rh2DG036000 Rh2DG399200 Rh5DG523600
rosa_wichuraiana	Rw1G013660 Rw2G002860 Rw2G030730 Rw4G021240 Rw4G021900 Rw7G017350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	109
AclWI	GGATC	1 cut(s)	173
AdeI	CACNNNGTG	1 cut(s)	79
AfaI	GTAC	1 cut(s)	366
AfiI	CCNNNNNNNGG	1 cut(s)	355
AgeI	ACCGGT	1 cut(s)	112
AluBI	AGCT	1 cut(s)	242
AluI	AGCT	1 cut(s)	242
Alw26I	GTCTC	1 cut(s)	112
AlwI	GGATC	1 cut(s)	173
AoxI	GGCC	1 cut(s)	81
ApeKI	GCWGC	1 cut(s)	242
AsiGI	ACCGGT	1 cut(s)	112
AspS9I	GGNCC	1 cut(s)	82
AsuHPI	GGTGA	1 cut(s)	127
AsuII	TTCGAA	1 cut(s)	215
BaeGI	GKGCMC	1 cut(s)	112
BanI	GGYRCC	1 cut(s)	109
BbvI	GCAGC	1 cut(s)	229
BccI	CCATC	2 cut(s)	174, 316
BceAI	ACGGC	2 cut(s)	32, 284
BcoDI	GTCTC	1 cut(s)	112
BfaI	CTAG	1 cut(s)	137
BglII	AGATCT	1 cut(s)	34
BisI	GCNGC	1 cut(s)	243
BlsI	GCNGC	1 cut(s)	244
BmgT120I	GGNCC	1 cut(s)	82
BmiI	GGNNCC	2 cut(s)	20, 111
BmsI	GCATC	2 cut(s)	277, 361
BplI	GAGNNNNNCTC	2 cut(s)	21, 53
Bpu14I	TTCGAA	1 cut(s)	215
BpuEI	CTTGAG	1 cut(s)	234
BsaI	GGTCTC	1 cut(s)	112
BsaJI	CCNNGG	3 cut(s)	124, 258, 381
BsaWI	WCCGGW	1 cut(s)	112
Bsc4I	CCNNNNNNNGG	1 cut(s)	355
Bse118I	RCCGGY	1 cut(s)	112
BseDI	CCNNGG	3 cut(s)	124, 258, 381
BseGI	GGATG	1 cut(s)	166
BseLI	CCNNNNNNNGG	1 cut(s)	355
BseRI	GAGGAG	2 cut(s)	45, 237
BseSI	GKGCMC	1 cut(s)	112
BseXI	GCAGC	1 cut(s)	229
BshFI	GGCC	1 cut(s)	83
BshNI	GGYRCC	1 cut(s)	109
BshTI	ACCGGT	1 cut(s)	112
BsiSI	CCGG	1 cut(s)	113
BslFI	GGGAC	1 cut(s)	277
BslI	CCNNNNNNNGG	1 cut(s)	355
BsmAI	GTCTC	1 cut(s)	112
BsmFI	GGGAC	1 cut(s)	277
BsnI	GGCC	1 cut(s)	83
Bso31I	GGTCTC	1 cut(s)	112
Bsp119I	TTCGAA	1 cut(s)	215
Bsp1286I	GDGCHC	1 cut(s)	112
Bsp143I	GATC	3 cut(s)	5, 34, 178
BspANI	GGCC	1 cut(s)	83
BspLI	GGNNCC	2 cut(s)	20, 111
BspPI	GGATC	1 cut(s)	173
BspT104I	TTCGAA	1 cut(s)	215
BspT107I	GGYRCC	1 cut(s)	109
BspTNI	GGTCTC	1 cut(s)	112
BsrFI	RCCGGY	1 cut(s)	112
BssAI	RCCGGY	1 cut(s)	112
BssECI	CCNNGG	3 cut(s)	124, 258, 381
BssMI	GATC	3 cut(s)	5, 34, 178
BssT1I	CCWWGG	2 cut(s)	124, 381
BstBI	TTCGAA	1 cut(s)	215
BstF5I	GGATG	1 cut(s)	166
BstKTI	GATC	3 cut(s)	8, 37, 181
BstMAI	GTCTC	1 cut(s)	112
BstMBI	GATC	3 cut(s)	5, 34, 178
BstMWI	GCNNNNNNNGC	1 cut(s)	296
BstSLI	GKGCMC	1 cut(s)	112
BstV1I	GCAGC	1 cut(s)	229
BstX2I	RGATCY	1 cut(s)	34
BstYI	RGATCY	1 cut(s)	34
BsuRI	GGCC	1 cut(s)	83
BtsCI	GGATG	1 cut(s)	166
Cfr10I	RCCGGY	1 cut(s)	112
Cfr13I	GGNCC	1 cut(s)	82
Csp6I	GTAC	1 cut(s)	365
CspAI	ACCGGT	1 cut(s)	112
CviAII	CATG	1 cut(s)	278
CviJI	RGCY	7 cut(s)	19, 83, 136, 212, 242, 299, 332
CviKI_1	RGCY	7 cut(s)	19, 83, 136, 212, 242, 299, 332
CviQI	GTAC	1 cut(s)	365
DpnI	GATC	3 cut(s)	7, 36, 180
DpnII	GATC	3 cut(s)	5, 34, 178
DraIII	CACNNNGTG	1 cut(s)	79
Eco130I	CCWWGG	2 cut(s)	124, 381
Eco31I	GGTCTC	1 cut(s)	112
EcoT14I	CCWWGG	2 cut(s)	124, 381
ErhI	CCWWGG	2 cut(s)	124, 381
FaeI	CATG	1 cut(s)	281
FaiI	YATR	2 cut(s)	10, 279
FaqI	GGGAC	1 cut(s)	277
FatI	CATG	1 cut(s)	277
Fnu4HI	GCNGC	1 cut(s)	243
FokI	GGATG	1 cut(s)	153
Fsp4HI	GCNGC	1 cut(s)	243
FspBI	CTAG	1 cut(s)	137
GluI	GCNGC	1 cut(s)	243
HaeIII	GGCC	1 cut(s)	83
HapII	CCGG	1 cut(s)	113
Hin1II	CATG	1 cut(s)	281
HpaII	CCGG	1 cut(s)	113
HphI	GGTGA	1 cut(s)	127
Hpy188I	TCNGA	1 cut(s)	96
Hpy188III	TCNNGA	1 cut(s)	251
HpyAV	CCTTC	6 cut(s)	61, 95, 144, 214, 298, 334
HpyCH4V	TGCA	2 cut(s)	283, 374
HpyF10VI	GCNNNNNNNGC	1 cut(s)	296
Hsp92II	CATG	1 cut(s)	281
Kzo9I	GATC	3 cut(s)	5, 34, 178
LmnI	GCTCC	2 cut(s)	24, 250
LpnPI	CCDG	2 cut(s)	126, 185
Lsp1109I	GCAGC	1 cut(s)	229
LweI	GCATC	2 cut(s)	277, 361
MaeI	CTAG	1 cut(s)	137
MalI	GATC	3 cut(s)	7, 36, 180
MboI	GATC	3 cut(s)	5, 34, 178
MboII	GAAGA	1 cut(s)	229
MflI	RGATCY	1 cut(s)	34
MhlI	GDGCHC	1 cut(s)	112
MmeI	TCCRAC	2 cut(s)	64, 74
MnlI	CCTC	4 cut(s)	23, 253, 258, 349
MspI	CCGG	1 cut(s)	113
MwoI	GCNNNNNNNGC	1 cut(s)	296
NdeII	GATC	3 cut(s)	5, 34, 178
NlaIII	CATG	1 cut(s)	281
NlaIV	GGNNCC	2 cut(s)	20, 111
NspV	TTCGAA	1 cut(s)	215
PinAI	ACCGGT	1 cut(s)	112
PkrI	GCNGC	1 cut(s)	244
PspN4I	GGNNCC	2 cut(s)	20, 111
PspPI	GGNCC	1 cut(s)	82
PsuI	RGATCY	1 cut(s)	34
RsaI	GTAC	1 cut(s)	366
RsaNI	GTAC	1 cut(s)	365
SatI	GCNGC	1 cut(s)	243
Sau3AI	GATC	3 cut(s)	5, 34, 178
Sau96I	GGNCC	1 cut(s)	82
SduI	GDGCHC	1 cut(s)	112
SetI	ASST	2 cut(s)	155, 244
SfaNI	GCATC	2 cut(s)	277, 361
SfuI	TTCGAA	1 cut(s)	215
SgrAI	CRCCGGYG	1 cut(s)	112
SmlI	CTYRAG	1 cut(s)	249
SmoI	CTYRAG	1 cut(s)	249
SspMI	CTAG	1 cut(s)	137
StyI	CCWWGG	2 cut(s)	124, 381
TaqI	TCGA	1 cut(s)	215
TatI	WGTACW	1 cut(s)	364
TseI	GCWGC	1 cut(s)	242
XspI	CTAG	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.