Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0001397

Physical Location & Seq

Genomic Coordinates Reverse (-)

30522551 .. 30524046

Gene Structure 1496 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G013660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGCAAGCTCAGTGGAGAAGGAGGAGGTTGTGACCTTAGAGCTACCAGCTCCTTCTGGTTGGATTAAGAAGTTTGTGGTGGTCTGTATTAATCTGCAATTTGTGCCCAAGCAAAGTGGAACTCCTAAGAAAAATGAGATCATATTTACGGCTCCAACTGGAGAGGAGATCTCCAACAAAAAACAGCTGGAACAATACCTGAAGGCACACCCTGGTGGCCCTTCAGTGTCGGAGTTTGATTGGGGCACTGGTGAGACCCCAAGGAGATCGGCTAGGATTAGTGAGAAGGTCAAGGCAACTCCATCCCCAGAGAGTGATCCCCCAAAGAAGCGAAGCAGAAAAACATCAGCTTCGAAGAAGGATGGCAAAGAAAAGGAAGCTGCTCCTCAAGAAACTGAGGGGACAAAAGTTAGTCATGTGCAAGATGCTGATAAAGTTGTGAAGGATAACGATACTGAGATGGAAAAGGCTGATGTGAAGGAAAACCAAGATGAGGATAAAGTACAAGATGCAGATACCAAGGCAGAAGTAGCTCCTCCTGAAGAAGCTAAAGTTGATGTAGGAATCATGTCTATATTTTTTTTCCCGGAGTTCTTAGCAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008327 GO:0036094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044444 GO:0044464 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBD

Protein Analysis

201

Amino Acids

22.14

Weight (kDa)

5.22

Isoelectric Point (pI)

53.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MBD	PF01429	9 - 88	1.9e-11	Methyl-CpG binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001397)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15790 AT3G15790 AT3G15790
fragaria_vesca	FvH4_1g03020 FvH4_1g03020 FvH4_1g03020 FvH4_1g03020 FvH4_6g29820 FvH4_6g29820 FvH4_6g29820 FvH4_6g29820 FvH4_6g29820 FvH4_6g29820
malus_domestica	MD00G1123000.v1.1 MD02G1029600.v1.1 MD15G1171000.v1.1 MD17G1210700.v1.1
prunus_persica	Prupe.3G086000_v2.0.a1 Prupe.7G245300_v2.0.a1
pyrus_communis	pycom02g02450 pycom09g14100 pycom15g15250 pycom17g21570
rosa_chinensis	RchiOBHm_Chr2g0088151 RchiOBHm_Chr2g0135641
rosa_laevigata	RLG00000015926 RLG00000019474
rosa_multiflora	Rmu_co8260895.1_g000001 Rmu_sc0002398.1_g000036 Rmu_sc0003275.1_g000050
rosa_roxburghii	Rroxscaffold_2G00109020 Rroxscaffold_2G00152920 Rroxscaffold_6G00395860 Rroxscaffold_7G00180210
rosa_rugosa	Rorug01G0481300 Rorug02G0325200
rosa_samantha	Rh2AG036300 Rh2AG376800 Rh2BG035500 Rh2BG076400 Rh2BG383100 Rh2CG036700 Rh2CG078600 Rh2CG362500 Rh2DG036000 Rh2DG399200 Rh5DG523600
rosa_wichuraiana	Rw1G013660 Rw2G002860 Rw2G030730 Rw4G021240 Rw4G021900 Rw7G017350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	311
AcuI	CTGAAG	3 cut(s)	207, 221, 561
AfaI	GTAC	1 cut(s)	504
AfiI	CCNNNNNNNGG	1 cut(s)	493
AjnI	CCWGG	1 cut(s)	211
AleI	CACNNNNGTG	1 cut(s)	213
AluBI	AGCT	8 cut(s)	9, 43, 50, 187, 350, 380, 533, 548
AluI	AGCT	8 cut(s)	9, 43, 50, 187, 350, 380, 533, 548
Alw26I	GTCTC	1 cut(s)	248
AlwI	GGATC	1 cut(s)	311
AoxI	GGCC	1 cut(s)	217
ApeKI	GCWGC	1 cut(s)	380
AseI	ATTAAT	1 cut(s)	90
AspS9I	GGNCC	1 cut(s)	218
AsuC2I	CCSGG	1 cut(s)	587
AsuHPI	GGTGA	1 cut(s)	263
AsuII	TTCGAA	1 cut(s)	353
BaeGI	GKGCMC	2 cut(s)	108, 248
BbvI	GCAGC	1 cut(s)	367
BccI	CCATC	3 cut(s)	310, 356, 454
BceAI	ACGGC	1 cut(s)	165
BciT130I	CCWGG	1 cut(s)	213
BcnI	CCSGG	1 cut(s)	587
BcoDI	GTCTC	1 cut(s)	248
BfaI	CTAG	1 cut(s)	273
BglII	AGATCT	1 cut(s)	168
BisI	GCNGC	1 cut(s)	381
BlsI	GCNGC	1 cut(s)	382
Bme1390I	CCNGG	2 cut(s)	213, 587
BmgT120I	GGNCC	1 cut(s)	218
BmiI	GGNNCC	1 cut(s)	153
BmrFI	CCNGG	2 cut(s)	213, 587
BmsI	GCATC	2 cut(s)	415, 499
BplI	GAGNNNNNCTC	2 cut(s)	155, 187
BpmI	CTGGAG	1 cut(s)	180
Bpu14I	TTCGAA	1 cut(s)	353
BpuEI	CTTGAG	1 cut(s)	372
BpuMI	CCSGG	1 cut(s)	587
BsaI	GGTCTC	1 cut(s)	248
BsaJI	CCNNGG	3 cut(s)	211, 260, 519
Bsc4I	CCNNNNNNNGG	1 cut(s)	493
Bse1I	ACTGG	2 cut(s)	163, 253
BseBI	CCWGG	1 cut(s)	213
BseDI	CCNNGG	3 cut(s)	211, 260, 519
BseGI	GGATG	2 cut(s)	302, 367
BseLI	CCNNNNNNNGG	1 cut(s)	493
BseMII	CTCAG	3 cut(s)	24, 387, 447
BseNI	ACTGG	2 cut(s)	163, 253
BseRI	GAGGAG	4 cut(s)	38, 179, 375, 525
BseSI	GKGCMC	2 cut(s)	108, 248
BseXI	GCAGC	1 cut(s)	367
BshFI	GGCC	1 cut(s)	219
BsiSI	CCGG	1 cut(s)	587
BslFI	GGGAC	1 cut(s)	415
BslI	CCNNNNNNNGG	1 cut(s)	493
BsmAI	GTCTC	1 cut(s)	248
BsmFI	GGGAC	1 cut(s)	415
BsnI	GGCC	1 cut(s)	219
Bso31I	GGTCTC	1 cut(s)	248
Bsp119I	TTCGAA	1 cut(s)	353
Bsp1286I	GDGCHC	2 cut(s)	108, 248
Bsp143I	GATC	4 cut(s)	138, 168, 266, 316
BspANI	GGCC	1 cut(s)	219
BspCNI	CTCAG	3 cut(s)	23, 388, 448
BspLI	GGNNCC	1 cut(s)	153
BspPI	GGATC	1 cut(s)	311
BspT104I	TTCGAA	1 cut(s)	353
BspTNI	GGTCTC	1 cut(s)	248
BsrI	ACTGG	2 cut(s)	163, 253
BssECI	CCNNGG	3 cut(s)	211, 260, 519
BssMI	GATC	4 cut(s)	138, 168, 266, 316
BssT1I	CCWWGG	2 cut(s)	260, 519
Bst2UI	CCWGG	1 cut(s)	213
BstAPI	GCANNNNNTGC	1 cut(s)	103
BstBI	TTCGAA	1 cut(s)	353
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	6 cut(s)	10, 37, 126, 396, 456, 595
BstF5I	GGATG	2 cut(s)	302, 367
BstKTI	GATC	4 cut(s)	141, 171, 269, 319
BstMAI	GTCTC	1 cut(s)	248
BstMBI	GATC	4 cut(s)	138, 168, 266, 316
BstMWI	GCNNNNNNNGC	2 cut(s)	103, 530
BstNI	CCWGG	1 cut(s)	213
BstSCI	CCNGG	2 cut(s)	211, 585
BstSLI	GKGCMC	2 cut(s)	108, 248
BstV1I	GCAGC	1 cut(s)	367
BstX2I	RGATCY	1 cut(s)	168
BstYI	RGATCY	1 cut(s)	168
BsuRI	GGCC	1 cut(s)	219
BtsCI	GGATG	2 cut(s)	302, 367
BtsIMutI	CAGTG	3 cut(s)	18, 231, 246
Cac8I	GCNNGC	1 cut(s)	7
Cfr13I	GGNCC	1 cut(s)	218
Csp6I	GTAC	1 cut(s)	503
CspCI	CAANNNNNGTGG	3 cut(s)	29, 97, 132
CviAII	CATG	2 cut(s)	416, 568
CviQI	GTAC	1 cut(s)	503
DdeI	CTNAG	6 cut(s)	10, 37, 126, 396, 456, 595
DpnI	GATC	4 cut(s)	140, 170, 268, 318
DpnII	GATC	4 cut(s)	138, 168, 266, 316
Eco130I	CCWWGG	2 cut(s)	260, 519
Eco31I	GGTCTC	1 cut(s)	248
Eco57I	CTGAAG	3 cut(s)	207, 221, 561
EcoRII	CCWGG	1 cut(s)	211
EcoT14I	CCWWGG	2 cut(s)	260, 519
ErhI	CCWWGG	2 cut(s)	260, 519
FaeI	CATG	2 cut(s)	419, 571
FaiI	YATR	4 cut(s)	143, 417, 569, 575
FaqI	GGGAC	1 cut(s)	415
FatI	CATG	2 cut(s)	415, 567
Fnu4HI	GCNGC	1 cut(s)	381
FokI	GGATG	2 cut(s)	289, 374
Fsp4HI	GCNGC	1 cut(s)	381
FspBI	CTAG	1 cut(s)	273
GluI	GCNGC	1 cut(s)	381
GsuI	CTGGAG	1 cut(s)	180
HaeIII	GGCC	1 cut(s)	219
HapII	CCGG	1 cut(s)	587
Hin1II	CATG	2 cut(s)	419, 571
HinfI	GANTC	1 cut(s)	564
HpaII	CCGG	1 cut(s)	587
HphI	GGTGA	1 cut(s)	263
Hpy188I	TCNGA	1 cut(s)	232
Hpy188III	TCNNGA	2 cut(s)	389, 539
HpyAV	CCTTC	8 cut(s)	13, 63, 196, 231, 280, 352, 436, 472
HpyCH4V	TGCA	3 cut(s)	97, 421, 512
HpyF10VI	GCNNNNNNNGC	2 cut(s)	103, 530
HpyF3I	CTNAG	6 cut(s)	10, 37, 126, 396, 456, 595
Hsp92II	CATG	2 cut(s)	419, 571
Kzo9I	GATC	4 cut(s)	138, 168, 266, 316
LmnI	GCTCC	4 cut(s)	55, 157, 388, 538
Lsp1109I	GCAGC	1 cut(s)	367
LweI	GCATC	2 cut(s)	415, 499
MaeI	CTAG	1 cut(s)	273
MaeIII	GTNAC	1 cut(s)	31
MalI	GATC	4 cut(s)	140, 170, 268, 318
MboI	GATC	4 cut(s)	138, 168, 266, 316
MboII	GAAGA	2 cut(s)	367, 554
MflI	RGATCY	1 cut(s)	168
MhlI	GDGCHC	2 cut(s)	108, 248
MluCI	AATT	1 cut(s)	98
MmeI	TCCRAC	4 cut(s)	41, 179, 198, 210
MnlI	CCTC	7 cut(s)	16, 19, 157, 391, 396, 487, 546
MseI	TTAA	2 cut(s)	66, 90
MslI	CAYNNNNRTG	1 cut(s)	213
MspA1I	CMGCKG	1 cut(s)	187
MspI	CCGG	1 cut(s)	587
MspR9I	CCNGG	2 cut(s)	213, 587
MvaI	CCWGG	1 cut(s)	213
MwoI	GCNNNNNNNGC	2 cut(s)	103, 530
NciI	CCSGG	1 cut(s)	587
NdeII	GATC	4 cut(s)	138, 168, 266, 316
NlaIII	CATG	2 cut(s)	419, 571
NlaIV	GGNNCC	1 cut(s)	153
NmuCI	GTSAC	1 cut(s)	31
NspV	TTCGAA	1 cut(s)	353
OliI	CACNNNNGTG	1 cut(s)	213
PfeI	GAWTC	1 cut(s)	564
PfoI	TCCNGGA	1 cut(s)	585
PkrI	GCNGC	1 cut(s)	382
PshBI	ATTAAT	1 cut(s)	90
Psp6I	CCWGG	1 cut(s)	211
PspGI	CCWGG	1 cut(s)	211
PspN4I	GGNNCC	1 cut(s)	153
PspPI	GGNCC	1 cut(s)	218
PsuI	RGATCY	1 cut(s)	168
PvuII	CAGCTG	1 cut(s)	187
RsaI	GTAC	1 cut(s)	504
RsaNI	GTAC	1 cut(s)	503
RseI	CAYNNNNRTG	1 cut(s)	213
SaqAI	TTAA	2 cut(s)	66, 90
SatI	GCNGC	1 cut(s)	381
Sau3AI	GATC	4 cut(s)	138, 168, 266, 316
Sau96I	GGNCC	1 cut(s)	218
ScrFI	CCNGG	2 cut(s)	213, 587
SduI	GDGCHC	2 cut(s)	108, 248
SfaNI	GCATC	2 cut(s)	415, 499
SfuI	TTCGAA	1 cut(s)	353
SmiMI	CAYNNNNRTG	1 cut(s)	213
SmlI	CTYRAG	1 cut(s)	387
SmoI	CTYRAG	1 cut(s)	387
Sse9I	AATT	1 cut(s)	98
SspMI	CTAG	1 cut(s)	273
StyD4I	CCNGG	2 cut(s)	211, 585
StyI	CCWWGG	2 cut(s)	260, 519
TaqI	TCGA	1 cut(s)	353
TasI	AATT	1 cut(s)	98
TatI	WGTACW	1 cut(s)	502
TfiI	GAWTC	1 cut(s)	564
Tru1I	TTAA	2 cut(s)	66, 90
Tru9I	TTAA	2 cut(s)	66, 90
TscAI	CASTG	3 cut(s)	18, 231, 253
TseFI	GTSAC	1 cut(s)	31
TseI	GCWGC	1 cut(s)	380
Tsp45I	GTSAC	1 cut(s)	31
TspRI	CASTG	3 cut(s)	18, 231, 253
VspI	ATTAAT	1 cut(s)	90
XspI	CTAG	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.