Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0001397

Physical Location & Seq

Genomic Coordinates Reverse (-)

26378592 .. 26383622

Gene Structure 5031 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1123000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGAGAGCAAAGTGGATGAAGTTTCTGTTGAGCTCTCAGCTCCTCCTGCTTGGAAGAAGAAGTTTTGTCCCAAGAAGGGAGGCACACCATGGAAAAATGAAATCATATTCATTTCTCCAACAGGAGAGGAGATTAATAATAAAAAACAATTGGAGCAATACCTAAAAGAACATCCTGGTAACCCTGCAATATCAGAGTTTGATTGGAGCACTGGTGAAACCCCTAGGAGATCAGCTAGGATCAGTGAAAAGGTCAAGATGGCTCCATCACCAGAGAGTGAGCCTCCGAAAAAGAGAGGCCAAAAATCATCAGGTTCAAAGGACAAAGTGGAAGCTGCTGGAGGAGAAGCTGATGCTACAAATGAAATTCAAATGAAAGATGCAGAAGTAGATGAGAAGAAAGATGGAGGAAAAACTGAGGAAGAAACTGACCAGACTAAACCAGAGGATGGTAATGATAAGACCCCGACTGATGCTAAGGAAACTCTAGGTGAGGAGACAAAGGAAGATGTAGTAGAGGAAAACCCCAGAGAGGAAGCAGCTAAAAACAACAAAGAAGATGTACCACAAGCTGAGGGAGAACAAGCAAATGGAACTAATGACAACAAACAGGATGACACAGCTACTGTGACTGTTGAAGCAAATGGGGCAGCAGAGAAAGAGAATCTGTATGGAGCCGCACCTCCTATGGACGGAGAGATCAAAATGAAACACGATGCAGCAGAGAATGATGGGAAATGCAATGCTCAAGCTGAAGAAAAAATCAAGCCCAAGGACGGGGAGGTTGTTGAAAATGGTAAGGTTGAGCAAGGGGCGCAAGCTGATGCCCCACAACAATTGAGCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008327 GO:0036094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044444 GO:0044464 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBD

Protein Analysis

283

Amino Acids

30.65

Weight (kDa)

4.64

Isoelectric Point (pI)

42.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MBD	PF01429	7 - 76	3.3e-16	Methyl-CpG binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001397)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15790 AT3G15790 AT3G15790
fragaria_vesca	FvH4_1g03020 FvH4_1g03020 FvH4_1g03020 FvH4_1g03020 FvH4_6g29820 FvH4_6g29820 FvH4_6g29820 FvH4_6g29820 FvH4_6g29820 FvH4_6g29820
malus_domestica	MD00G1123000.v1.1 MD02G1029600.v1.1 MD15G1171000.v1.1 MD17G1210700.v1.1
prunus_persica	Prupe.3G086000_v2.0.a1 Prupe.7G245300_v2.0.a1
pyrus_communis	pycom02g02450 pycom09g14100 pycom15g15250 pycom17g21570
rosa_chinensis	RchiOBHm_Chr2g0088151 RchiOBHm_Chr2g0135641
rosa_laevigata	RLG00000015926 RLG00000019474
rosa_multiflora	Rmu_co8260895.1_g000001 Rmu_sc0002398.1_g000036 Rmu_sc0003275.1_g000050
rosa_roxburghii	Rroxscaffold_2G00109020 Rroxscaffold_2G00152920 Rroxscaffold_6G00395860 Rroxscaffold_7G00180210
rosa_rugosa	Rorug01G0481300 Rorug02G0325200
rosa_samantha	Rh2AG036300 Rh2AG376800 Rh2BG035500 Rh2BG076400 Rh2BG383100 Rh2CG036700 Rh2CG078600 Rh2CG362500 Rh2DG036000 Rh2DG399200 Rh5DG523600
rosa_wichuraiana	Rw1G013660 Rw2G002860 Rw2G030730 Rw4G021240 Rw4G021900 Rw7G017350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	449
AciI	CCGC	1 cut(s)	678
AclWI	GGATC	1 cut(s)	248
AcsI	RAATTY	1 cut(s)	366
AcuI	CTGAAG	1 cut(s)	774
AfaI	GTAC	1 cut(s)	564
AfiI	CCNNNNNNNGG	6 cut(s)	77, 449, 532, 692, 776, 777
AgsI	TTSAA	4 cut(s)	318, 371, 638, 791
AjnI	CCWGG	1 cut(s)	175
Alw21I	GWGCWC	2 cut(s)	36, 212
Alw26I	GTCTC	1 cut(s)	491
AlwI	GGATC	1 cut(s)	248
AlwNI	CAGNNNCTG	1 cut(s)	626
AoxI	GGCC	1 cut(s)	298
ApeKI	GCWGC	5 cut(s)	335, 539, 650, 719, 843
ApoI	RAATTY	1 cut(s)	366
AseI	ATTAAT	1 cut(s)	135
AspA2I	CCTAGG	1 cut(s)	224
AspLEI	GCGC	1 cut(s)	817
AsuHPI	GGTGA	3 cut(s)	227, 261, 503
AvrII	CCTAGG	1 cut(s)	224
BanII	GRGCYC	1 cut(s)	36
Bbv12I	GWGCWC	2 cut(s)	36, 212
BbvCI	CCTCAGC	1 cut(s)	573
BbvI	GCAGC	4 cut(s)	322, 551, 662, 731
BccI	CCATC	5 cut(s)	253, 274, 398, 443, 725
BciT130I	CCWGG	1 cut(s)	177
BcoDI	GTCTC	1 cut(s)	491
BfaI	CTAG	3 cut(s)	225, 237, 488
BisI	GCNGC	6 cut(s)	336, 540, 651, 678, 720, 844
BlnI	CCTAGG	1 cut(s)	224
BlsI	GCNGC	6 cut(s)	337, 541, 652, 679, 721, 845
Bme1390I	CCNGG	1 cut(s)	177
BmiI	GGNNCC	2 cut(s)	264, 676
BmrFI	CCNGG	1 cut(s)	177
BmsI	GCATC	5 cut(s)	343, 370, 463, 706, 814
BplI	GAGNNNNNCTC	2 cut(s)	268, 300
BpmI	CTGGAG	1 cut(s)	360
Bpu10I	CCTNAGC	2 cut(s)	477, 573
BpuEI	CTTGAG	1 cut(s)	732
BsaJI	CCNNGG	3 cut(s)	89, 224, 771
BsaXI	ACNNNNNCTCC	2 cut(s)	199, 229
Bsc4I	CCNNNNNNNGG	6 cut(s)	77, 449, 532, 692, 776, 777
Bse1I	ACTGG	1 cut(s)	217
Bse3DI	GCAATG	1 cut(s)	748
BseBI	CCWGG	1 cut(s)	177
BseDI	CCNNGG	3 cut(s)	89, 224, 771
BseGI	GGATG	4 cut(s)	22, 172, 454, 619
BseLI	CCNNNNNNNGG	6 cut(s)	77, 449, 532, 692, 776, 777
BseMI	GCAATG	1 cut(s)	748
BseMII	CTCAG	3 cut(s)	51, 408, 564
BseNI	ACTGG	1 cut(s)	217
BseRI	GAGGAG	4 cut(s)	33, 143, 357, 509
BseXI	GCAGC	4 cut(s)	322, 551, 662, 731
BshFI	GGCC	1 cut(s)	300
BsiHKAI	GWGCWC	2 cut(s)	36, 212
BslFI	GGGAC	1 cut(s)	54
BslI	CCNNNNNNNGG	6 cut(s)	77, 449, 532, 692, 776, 777
BsmAI	GTCTC	1 cut(s)	491
BsmFI	GGGAC	1 cut(s)	54
BsnI	GGCC	1 cut(s)	300
Bsp1286I	GDGCHC	2 cut(s)	36, 212
Bsp143I	GATC	3 cut(s)	230, 240, 699
Bsp19I	CCATGG	1 cut(s)	89
BspACI	CCGC	1 cut(s)	678
BspANI	GGCC	1 cut(s)	300
BspCNI	CTCAG	3 cut(s)	50, 409, 565
BspLI	GGNNCC	2 cut(s)	264, 676
BspPI	GGATC	1 cut(s)	248
BsrDI	GCAATG	1 cut(s)	748
BsrI	ACTGG	1 cut(s)	217
BssECI	CCNNGG	3 cut(s)	89, 224, 771
BssMI	GATC	3 cut(s)	230, 240, 699
BssT1I	CCWWGG	3 cut(s)	89, 224, 771
Bst2UI	CCWGG	1 cut(s)	177
Bst4CI	ACNGT	2 cut(s)	628, 634
BstC8I	GCNNGC	1 cut(s)	819
BstDEI	CTNAG	4 cut(s)	37, 417, 477, 573
BstDSI	CCRYGG	1 cut(s)	89
BstEII	GGTNACC	1 cut(s)	179
BstF5I	GGATG	4 cut(s)	22, 172, 454, 619
BstHHI	GCGC	1 cut(s)	817
BstKTI	GATC	3 cut(s)	233, 243, 702
BstMAI	GTCTC	1 cut(s)	491
BstMBI	GATC	3 cut(s)	230, 240, 699
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 647, 814
BstNI	CCWGG	1 cut(s)	177
BstPI	GGTNACC	1 cut(s)	179
BstSCI	CCNGG	1 cut(s)	175
BstV1I	GCAGC	4 cut(s)	322, 551, 662, 731
BsuRI	GGCC	1 cut(s)	300
BtgI	CCRYGG	1 cut(s)	89
BtsCI	GGATG	4 cut(s)	22, 172, 454, 619
BtsIMutI	CAGTG	2 cut(s)	210, 250
Cac8I	GCNNGC	1 cut(s)	819
CaiI	CAGNNNCTG	1 cut(s)	626
CfoI	GCGC	1 cut(s)	817
Csp6I	GTAC	1 cut(s)	563
CspCI	CAANNNNNGTGG	1 cut(s)	819
CviAII	CATG	1 cut(s)	90
CviQI	GTAC	1 cut(s)	563
DdeI	CTNAG	4 cut(s)	37, 417, 477, 573
DpnI	GATC	3 cut(s)	232, 242, 701
DpnII	GATC	3 cut(s)	230, 240, 699
Ecl136II	GAGCTC	1 cut(s)	34
Eco130I	CCWWGG	3 cut(s)	89, 224, 771
Eco24I	GRGCYC	1 cut(s)	36
Eco53kI	GAGCTC	1 cut(s)	34
Eco57I	CTGAAG	1 cut(s)	774
Eco91I	GGTNACC	1 cut(s)	179
EcoICRI	GAGCTC	1 cut(s)	34
EcoO65I	GGTNACC	1 cut(s)	179
EcoRII	CCWGG	1 cut(s)	175
EcoT14I	CCWWGG	3 cut(s)	89, 224, 771
EcoT38I	GRGCYC	1 cut(s)	36
ErhI	CCWWGG	3 cut(s)	89, 224, 771
FaeI	CATG	1 cut(s)	93
FaiI	YATR	4 cut(s)	91, 107, 672, 689
FaqI	GGGAC	1 cut(s)	54
FatI	CATG	1 cut(s)	89
Fnu4HI	GCNGC	6 cut(s)	336, 540, 651, 678, 720, 844
FokI	GGATG	4 cut(s)	29, 159, 461, 626
FriOI	GRGCYC	1 cut(s)	36
Fsp4HI	GCNGC	6 cut(s)	336, 540, 651, 678, 720, 844
FspBI	CTAG	3 cut(s)	225, 237, 488
GlaI	GCGC	1 cut(s)	816
GluI	GCNGC	6 cut(s)	336, 540, 651, 678, 720, 844
GsuI	CTGGAG	1 cut(s)	360
HaeIII	GGCC	1 cut(s)	300
HhaI	GCGC	1 cut(s)	817
Hin1II	CATG	1 cut(s)	93
Hin6I	GCGC	1 cut(s)	815
HinP1I	GCGC	1 cut(s)	815
HinfI	GANTC	1 cut(s)	664
HphI	GGTGA	3 cut(s)	227, 261, 503
Hpy188I	TCNGA	2 cut(s)	196, 288
Hpy188III	TCNNGA	1 cut(s)	256
HpyAV	CCTTC	1 cut(s)	70
HpyCH4III	ACNGT	2 cut(s)	628, 634
HpyCH4V	TGCA	4 cut(s)	188, 383, 719, 741
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 647, 814
HpyF3I	CTNAG	4 cut(s)	37, 417, 477, 573
Hsp92II	CATG	1 cut(s)	93
HspAI	GCGC	1 cut(s)	815
Kzo9I	GATC	3 cut(s)	230, 240, 699
LmnI	GCTCC	5 cut(s)	46, 154, 207, 268, 674
Lsp1109I	GCAGC	4 cut(s)	322, 551, 662, 731
LweI	GCATC	5 cut(s)	343, 370, 463, 706, 814
MaeI	CTAG	3 cut(s)	225, 237, 488
MaeIII	GTNAC	2 cut(s)	179, 628
MalI	GATC	3 cut(s)	232, 242, 701
MboI	GATC	3 cut(s)	230, 240, 699
MboII	GAAGA	7 cut(s)	67, 70, 409, 434, 518, 569, 767
MfeI	CAATTG	2 cut(s)	149, 836
MhlI	GDGCHC	2 cut(s)	36, 212
MluCI	AATT	3 cut(s)	149, 366, 836
MmeI	TCCRAC	1 cut(s)	143
MseI	TTAA	1 cut(s)	135
MspA1I	CMGCKG	1 cut(s)	846
MspR9I	CCNGG	1 cut(s)	177
MunI	CAATTG	2 cut(s)	149, 836
MvaI	CCWGG	1 cut(s)	177
MwoI	GCNNNNNNNGC	3 cut(s)	47, 647, 814
NcoI	CCATGG	1 cut(s)	89
NdeII	GATC	3 cut(s)	230, 240, 699
NlaIII	CATG	1 cut(s)	93
NlaIV	GGNNCC	2 cut(s)	264, 676
NmuCI	GTSAC	1 cut(s)	628
PfeI	GAWTC	1 cut(s)	664
PflMI	CCANNNNNTGG	1 cut(s)	449
PkrI	GCNGC	6 cut(s)	337, 541, 652, 679, 721, 845
PshBI	ATTAAT	1 cut(s)	135
Psp124BI	GAGCTC	1 cut(s)	36
Psp6I	CCWGG	1 cut(s)	175
PspEI	GGTNACC	1 cut(s)	179
PspGI	CCWGG	1 cut(s)	175
PspN4I	GGNNCC	2 cut(s)	264, 676
PstNI	CAGNNNCTG	1 cut(s)	626
PvuII	CAGCTG	1 cut(s)	846
RsaI	GTAC	1 cut(s)	564
RsaNI	GTAC	1 cut(s)	563
SacI	GAGCTC	1 cut(s)	36
SaqAI	TTAA	1 cut(s)	135
SatI	GCNGC	6 cut(s)	336, 540, 651, 678, 720, 844
Sau3AI	GATC	3 cut(s)	230, 240, 699
ScrFI	CCNGG	1 cut(s)	177
SduI	GDGCHC	2 cut(s)	36, 212
SfaNI	GCATC	5 cut(s)	343, 370, 463, 706, 814
SmlI	CTYRAG	1 cut(s)	747
SmoI	CTYRAG	1 cut(s)	747
Sse9I	AATT	3 cut(s)	149, 366, 836
SsiI	CCGC	1 cut(s)	678
SspMI	CTAG	3 cut(s)	225, 237, 488
SstI	GAGCTC	1 cut(s)	36
StyD4I	CCNGG	1 cut(s)	175
StyI	CCWWGG	3 cut(s)	89, 224, 771
TaaI	ACNGT	2 cut(s)	628, 634
TasI	AATT	3 cut(s)	149, 366, 836
TauI	GCSGC	1 cut(s)	680
TfiI	GAWTC	1 cut(s)	664
Tru1I	TTAA	1 cut(s)	135
Tru9I	TTAA	1 cut(s)	135
TscAI	CASTG	2 cut(s)	217, 250
TseFI	GTSAC	1 cut(s)	628
TseI	GCWGC	5 cut(s)	335, 539, 650, 719, 843
Tsp45I	GTSAC	1 cut(s)	628
TspDTI	ATGAA	6 cut(s)	33, 100, 114, 378, 389, 722
TspGWI	ACGGA	1 cut(s)	708
TspRI	CASTG	2 cut(s)	217, 250
Van91I	CCANNNNNTGG	1 cut(s)	449
VspI	ATTAAT	1 cut(s)	135
XapI	RAATTY	1 cut(s)	366
XmaJI	CCTAGG	1 cut(s)	224
XspI	CTAG	3 cut(s)	225, 237, 488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.