Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0001397

Physical Location & Seq

Genomic Coordinates Forward (+)

25555635 .. 25560593

Gene Structure 4959 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1210700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGAGAGCAAAGTGGATGAGGTTTCTGTTGAGCTCTCAGCTCCTCCTGCTTGGAAGAAGAAGTTTTTGCCCAAGAAGGGAGGCACACCAAGGAAAAATGAAATCATATTCATTTCTCCGACAGGAGAGGAGTTTAATAGTAAAAAACAATTGGAGAAATACCTAAAAGCACATCCTGGTAACCCCGCAATATCAGAGTTTGATTGGAGCACTGGTGAAACCCCTAGGAGATCAGCTAGGATCAGTGAAAAGGTCAAGGTGGCTCCATCACCAGAGAGCGAGCCTCCAAAAAAGAGAGGCCGAAAATCATCAGGTTCAAAGGACAAAGTGGAAGCTTCTGGTGGAGAAGCTGATGCTACAAATGAAATTCAAATGAAAGATGCAGAGGTAGATGAGAAGAAAGATGCAGAATGTGAGAAACAGAAGGATGCAGAAGCCGAGAAAGGGAAAGATGCTTTGAAGGAAAATCAGGTTGGCAATGGAGGAAAAACTGAGGAAGAAACTGACCAGACTAAGCCAGAGGATGGTAAGGATAAGACCCTGACTGATGCTAAGGAAACTCTAGGTGAGGAGAAAAAGGAAGATGCAGTAGAGGAAAAACCCGCTGAGGAAGCAGCTGAAAACAACAAAGAAGATGTACCGCAAGCTGAGGGAGGAAAAGCAGATGGAACTAGTGACAAGAAACAGGATGACATAGCTACTGTGACTGTTGAAGCAAATGGGGCAGCAGAGAAAGAGAATCTGGATGGAACCGCACCTCCTATGGGCGGAGAGATCAAAATGAAACATGATGCAGCAGAGAACGATGGGAAATGCAATGCTCAAGCTGAAGAGAAAGTCAAGCCCAAGGATGGGGAGGTTGTTGAAAATGGTAAGGTTGAGCAAGTGGCGCAAGCGGATGCCCCTCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008327 GO:0036094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044444 GO:0044464 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBD

Protein Analysis

304

Amino Acids

32.71

Weight (kDa)

4.84

Isoelectric Point (pI)

36.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MBD	PF01429	7 - 76	2.1e-16	Methyl-CpG binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001397)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15790 AT3G15790 AT3G15790
fragaria_vesca	FvH4_1g03020 FvH4_1g03020 FvH4_1g03020 FvH4_1g03020 FvH4_6g29820 FvH4_6g29820 FvH4_6g29820 FvH4_6g29820 FvH4_6g29820 FvH4_6g29820
malus_domestica	MD00G1123000.v1.1 MD02G1029600.v1.1 MD15G1171000.v1.1 MD17G1210700.v1.1
prunus_persica	Prupe.3G086000_v2.0.a1 Prupe.7G245300_v2.0.a1
pyrus_communis	pycom02g02450 pycom09g14100 pycom15g15250 pycom17g21570
rosa_chinensis	RchiOBHm_Chr2g0088151 RchiOBHm_Chr2g0135641
rosa_laevigata	RLG00000015926 RLG00000019474
rosa_multiflora	Rmu_co8260895.1_g000001 Rmu_sc0002398.1_g000036 Rmu_sc0003275.1_g000050
rosa_roxburghii	Rroxscaffold_2G00109020 Rroxscaffold_2G00152920 Rroxscaffold_6G00395860 Rroxscaffold_7G00180210
rosa_rugosa	Rorug01G0481300 Rorug02G0325200
rosa_samantha	Rh2AG036300 Rh2AG376800 Rh2BG035500 Rh2BG076400 Rh2BG383100 Rh2CG036700 Rh2CG078600 Rh2CG362500 Rh2DG036000 Rh2DG399200 Rh5DG523600
rosa_wichuraiana	Rw1G013660 Rw2G002860 Rw2G030730 Rw4G021240 Rw4G021900 Rw7G017350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	524
AciI	CCGC	6 cut(s)	186, 603, 641, 753, 768, 896
AclWI	GGATC	1 cut(s)	248
AcsI	RAATTY	1 cut(s)	366
AcuI	CTGAAG	1 cut(s)	849
AfaI	GTAC	1 cut(s)	639
AfiI	CCNNNNNNNGG	7 cut(s)	77, 444, 524, 764, 767, 851, 852
AgsI	TTSAA	5 cut(s)	318, 371, 460, 713, 866
AhlI	ACTAGT	1 cut(s)	671
AjnI	CCWGG	1 cut(s)	175
AjuI	GAANNNNNNNTTGG	2 cut(s)	456, 488
AloI	GAACNNNNNNTCC	2 cut(s)	742, 774
AluBI	AGCT	9 cut(s)	34, 41, 236, 335, 350, 617, 647, 698, 827
AluI	AGCT	9 cut(s)	34, 41, 236, 335, 350, 617, 647, 698, 827
Alw21I	GWGCWC	2 cut(s)	36, 212
AlwI	GGATC	1 cut(s)	248
AoxI	GGCC	1 cut(s)	298
ApeKI	GCWGC	3 cut(s)	614, 725, 794
ApoI	RAATTY	1 cut(s)	366
AspA2I	CCTAGG	1 cut(s)	224
AspLEI	GCGC	1 cut(s)	892
AsuHPI	GGTGA	3 cut(s)	227, 261, 578
AvrII	CCTAGG	1 cut(s)	224
BanII	GRGCYC	1 cut(s)	36
Bbv12I	GWGCWC	2 cut(s)	36, 212
BbvCI	CCTCAGC	2 cut(s)	606, 648
BbvI	GCAGC	3 cut(s)	626, 737, 806
BccI	CCATC	6 cut(s)	274, 518, 659, 740, 800, 845
BciT130I	CCWGG	1 cut(s)	177
BcuI	ACTAGT	1 cut(s)	671
BfaI	CTAG	4 cut(s)	225, 237, 563, 672
BisI	GCNGC	3 cut(s)	615, 726, 795
BlnI	CCTAGG	1 cut(s)	224
BlsI	GCNGC	3 cut(s)	616, 727, 796
Bme1390I	CCNGG	1 cut(s)	177
BmiI	GGNNCC	2 cut(s)	264, 751
BmrFI	CCNGG	1 cut(s)	177
BmsI	GCATC	9 cut(s)	343, 370, 394, 418, 442, 538, 574, 781, 889
BplI	GAGNNNNNCTC	2 cut(s)	268, 300
Bpu10I	CCTNAGC	3 cut(s)	552, 606, 648
BpuEI	CTTGAG	1 cut(s)	807
BsaJI	CCNNGG	3 cut(s)	89, 224, 846
BsaXI	ACNNNNNCTCC	4 cut(s)	199, 229, 742, 772
Bsc4I	CCNNNNNNNGG	7 cut(s)	77, 444, 524, 764, 767, 851, 852
Bse1I	ACTGG	1 cut(s)	217
Bse3DI	GCAATG	2 cut(s)	484, 823
BseBI	CCWGG	1 cut(s)	177
BseDI	CCNNGG	3 cut(s)	89, 224, 846
BseGI	GGATG	8 cut(s)	22, 172, 433, 529, 694, 751, 856, 904
BseLI	CCNNNNNNNGG	7 cut(s)	77, 444, 524, 764, 767, 851, 852
BseMI	GCAATG	2 cut(s)	484, 823
BseMII	CTCAG	4 cut(s)	51, 483, 597, 639
BseNI	ACTGG	1 cut(s)	217
BseRI	GAGGAG	3 cut(s)	33, 143, 584
BseXI	GCAGC	3 cut(s)	626, 737, 806
BshFI	GGCC	1 cut(s)	300
BsiHKAI	GWGCWC	2 cut(s)	36, 212
BslI	CCNNNNNNNGG	7 cut(s)	77, 444, 524, 764, 767, 851, 852
BsnI	GGCC	1 cut(s)	300
Bsp1286I	GDGCHC	2 cut(s)	36, 212
Bsp143I	GATC	3 cut(s)	230, 240, 774
BspACI	CCGC	6 cut(s)	186, 603, 641, 753, 768, 896
BspANI	GGCC	1 cut(s)	300
BspCNI	CTCAG	4 cut(s)	50, 484, 598, 640
BspLI	GGNNCC	2 cut(s)	264, 751
BspPI	GGATC	1 cut(s)	248
BsrDI	GCAATG	2 cut(s)	484, 823
BsrI	ACTGG	1 cut(s)	217
BssECI	CCNNGG	3 cut(s)	89, 224, 846
BssMI	GATC	3 cut(s)	230, 240, 774
BssT1I	CCWWGG	3 cut(s)	89, 224, 846
Bst2UI	CCWGG	1 cut(s)	177
Bst4CI	ACNGT	2 cut(s)	703, 709
Bst6I	CTCTTC	1 cut(s)	825
BstC8I	GCNNGC	3 cut(s)	281, 645, 894
BstDEI	CTNAG	6 cut(s)	37, 492, 513, 552, 606, 648
BstEII	GGTNACC	1 cut(s)	179
BstF5I	GGATG	8 cut(s)	22, 172, 433, 529, 694, 751, 856, 904
BstHHI	GCGC	1 cut(s)	892
BstKTI	GATC	3 cut(s)	233, 243, 777
BstMBI	GATC	3 cut(s)	230, 240, 774
BstMWI	GCNNNNNNNGC	4 cut(s)	47, 611, 722, 889
BstNI	CCWGG	1 cut(s)	177
BstPI	GGTNACC	1 cut(s)	179
BstSCI	CCNGG	1 cut(s)	175
BstV1I	GCAGC	3 cut(s)	626, 737, 806
BsuRI	GGCC	1 cut(s)	300
BtsCI	GGATG	8 cut(s)	22, 172, 433, 529, 694, 751, 856, 904
BtsIMutI	CAGTG	2 cut(s)	210, 250
Cac8I	GCNNGC	3 cut(s)	281, 645, 894
CfoI	GCGC	1 cut(s)	892
Csp6I	GTAC	1 cut(s)	638
CviAII	CATG	1 cut(s)	788
CviQI	GTAC	1 cut(s)	638
DdeI	CTNAG	6 cut(s)	37, 492, 513, 552, 606, 648
DpnI	GATC	3 cut(s)	232, 242, 776
DpnII	GATC	3 cut(s)	230, 240, 774
Eam1104I	CTCTTC	1 cut(s)	825
EarI	CTCTTC	1 cut(s)	825
EciI	GGCGGA	1 cut(s)	783
Ecl136II	GAGCTC	1 cut(s)	34
Eco130I	CCWWGG	3 cut(s)	89, 224, 846
Eco24I	GRGCYC	1 cut(s)	36
Eco53kI	GAGCTC	1 cut(s)	34
Eco57I	CTGAAG	1 cut(s)	849
Eco91I	GGTNACC	1 cut(s)	179
EcoICRI	GAGCTC	1 cut(s)	34
EcoO65I	GGTNACC	1 cut(s)	179
EcoRII	CCWGG	1 cut(s)	175
EcoT14I	CCWWGG	3 cut(s)	89, 224, 846
EcoT38I	GRGCYC	1 cut(s)	36
ErhI	CCWWGG	3 cut(s)	89, 224, 846
FaeI	CATG	1 cut(s)	791
FaiI	YATR	5 cut(s)	107, 695, 764, 789, 910
FatI	CATG	1 cut(s)	787
FauI	CCCGC	2 cut(s)	193, 610
Fnu4HI	GCNGC	3 cut(s)	615, 726, 795
FokI	GGATG	7 cut(s)	29, 159, 440, 536, 701, 758, 863
FriOI	GRGCYC	1 cut(s)	36
Fsp4HI	GCNGC	3 cut(s)	615, 726, 795
FspBI	CTAG	4 cut(s)	225, 237, 563, 672
GlaI	GCGC	1 cut(s)	891
GluI	GCNGC	3 cut(s)	615, 726, 795
HaeIII	GGCC	1 cut(s)	300
HhaI	GCGC	1 cut(s)	892
Hin1II	CATG	1 cut(s)	791
Hin6I	GCGC	1 cut(s)	890
HinP1I	GCGC	1 cut(s)	890
HindIII	AAGCTT	1 cut(s)	333
HinfI	GANTC	1 cut(s)	739
HphI	GGTGA	3 cut(s)	227, 261, 578
Hpy188I	TCNGA	2 cut(s)	120, 196
Hpy188III	TCNNGA	1 cut(s)	743
HpyAV	CCTTC	3 cut(s)	70, 418, 454
HpyCH4III	ACNGT	2 cut(s)	703, 709
HpyCH4V	TGCA	6 cut(s)	383, 407, 431, 587, 794, 816
HpyF10VI	GCNNNNNNNGC	4 cut(s)	47, 611, 722, 889
HpyF3I	CTNAG	6 cut(s)	37, 492, 513, 552, 606, 648
Hsp92II	CATG	1 cut(s)	791
HspAI	GCGC	1 cut(s)	890
Kzo9I	GATC	3 cut(s)	230, 240, 774
LmnI	GCTCC	3 cut(s)	46, 207, 268
Lsp1109I	GCAGC	3 cut(s)	626, 737, 806
LweI	GCATC	9 cut(s)	343, 370, 394, 418, 442, 538, 574, 781, 889
MaeI	CTAG	4 cut(s)	225, 237, 563, 672
MaeIII	GTNAC	3 cut(s)	179, 674, 703
MalI	GATC	3 cut(s)	232, 242, 776
MboI	GATC	3 cut(s)	230, 240, 774
MboII	GAAGA	7 cut(s)	67, 70, 409, 509, 593, 644, 842
MfeI	CAATTG	1 cut(s)	149
MhlI	GDGCHC	2 cut(s)	36, 212
MluCI	AATT	2 cut(s)	149, 366
MmeI	TCCRAC	1 cut(s)	143
MseI	TTAA	1 cut(s)	135
MspA1I	CMGCKG	2 cut(s)	605, 617
MspR9I	CCNGG	1 cut(s)	177
MunI	CAATTG	1 cut(s)	149
MvaI	CCWGG	1 cut(s)	177
MwoI	GCNNNNNNNGC	4 cut(s)	47, 611, 722, 889
NdeII	GATC	3 cut(s)	230, 240, 774
NlaIII	CATG	1 cut(s)	791
NlaIV	GGNNCC	2 cut(s)	264, 751
NmeAIII	GCCGAG	1 cut(s)	463
NmuCI	GTSAC	2 cut(s)	674, 703
PfeI	GAWTC	1 cut(s)	739
PflMI	CCANNNNNTGG	1 cut(s)	524
PkrI	GCNGC	3 cut(s)	616, 727, 796
Psp124BI	GAGCTC	1 cut(s)	36
Psp6I	CCWGG	1 cut(s)	175
PspEI	GGTNACC	1 cut(s)	179
PspGI	CCWGG	1 cut(s)	175
PspN4I	GGNNCC	2 cut(s)	264, 751
PvuII	CAGCTG	1 cut(s)	617
RsaI	GTAC	1 cut(s)	639
RsaNI	GTAC	1 cut(s)	638
SacI	GAGCTC	1 cut(s)	36
SaqAI	TTAA	1 cut(s)	135
SatI	GCNGC	3 cut(s)	615, 726, 795
Sau3AI	GATC	3 cut(s)	230, 240, 774
ScrFI	CCNGG	1 cut(s)	177
SduI	GDGCHC	2 cut(s)	36, 212
SfaNI	GCATC	9 cut(s)	343, 370, 394, 418, 442, 538, 574, 781, 889
SmlI	CTYRAG	1 cut(s)	822
SmoI	CTYRAG	1 cut(s)	822
SpeI	ACTAGT	1 cut(s)	671
Sse9I	AATT	2 cut(s)	149, 366
SsiI	CCGC	6 cut(s)	186, 603, 641, 753, 768, 896
SspMI	CTAG	4 cut(s)	225, 237, 563, 672
SstI	GAGCTC	1 cut(s)	36
StyD4I	CCNGG	1 cut(s)	175
StyI	CCWWGG	3 cut(s)	89, 224, 846
TaaI	ACNGT	2 cut(s)	703, 709
TasI	AATT	2 cut(s)	149, 366
TfiI	GAWTC	1 cut(s)	739
Tru1I	TTAA	1 cut(s)	135
Tru9I	TTAA	1 cut(s)	135
TscAI	CASTG	2 cut(s)	217, 250
TseFI	GTSAC	2 cut(s)	674, 703
TseI	GCWGC	3 cut(s)	614, 725, 794
Tsp45I	GTSAC	2 cut(s)	674, 703
TspDTI	ATGAA	5 cut(s)	100, 114, 378, 389, 797
TspRI	CASTG	2 cut(s)	217, 250
Van91I	CCANNNNNTGG	1 cut(s)	524
XapI	RAATTY	1 cut(s)	366
XmaJI	CCTAGG	1 cut(s)	224
XspI	CTAG	4 cut(s)	225, 237, 563, 672

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.