Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001397

Physical Location & Seq

Genomic Coordinates Reverse (-)

1704282 .. 1707000

Gene Structure 2719 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g03020.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGACAAGGTCAGTGGAGAAGGAGGAGGTTGTGTCCATGGAGTTACCAGCTCCTTCGGGTTGGATTAAGAAGTTTGTGCCCAAGCAAAGTGGAACTCCTAAGAAAAATGAGATCATATTTACGGCTCCAACTGGAGAGGAGATCTCTAACAAAAGACAGCTGGAACAATACCTGAAGGCACACCCTGGTGGCCCTGCAGCATCAGAGTTTGATTGGGGCACTGGTGAGACCCCAAGGAGATCGGCTAGGATTAGTGAGAAGGTCAAGGCAACTCCATCCCCAGAAAGTGATCCCCCGAAGAAGCGAAGCAAAAAAACATCAGCTTCGAAGAAGGATAGCAAAGAAAAGGAAGCTGTTCCTGAAGGAACTGAGGAGACAAAAGTTAATGATGTGCAAGATGCTGATAAAGCTCTGAAGGATAACGACACTGAGATGGAAAAGGCTGATGTGAAGGAAAACCAAGATGAGGATAAAGTACAAGATGCAGGAGAGGGCAAGGAAGCTACTGAAGAAACTAAAGTTGAGAATGAACCCAAAATACCTGATGAAGGTGACAAGGGCAAGGAAACTACTGAAGTTGATGAAGGAACCAATGATGGGAAGGAAGTTGAGGAAGTGACCGGGGATCAGAGGAAAGCAGACATAGCTACTGGACCTGAAGACAAAATTGAAGGAGAAGGAGAGGAAAAAGAAAAACATAAAGAAACTGAAACTAAGGAGAAAGAAGCAACACAAGGGAAGGATGAGGAACATAAGAGTTCAGGTGTTCATGAGTCGGGCACGAAGATTGAAGCAGAAGTGACTGAAAATGGCAGCAACGGCAATGAGGCTGTGAAGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008327 GO:0036094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044444 GO:0044464 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBD

Protein Analysis

281

Amino Acids

30.7

Weight (kDa)

4.79

Isoelectric Point (pI)

44.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MBD	PF01429	5 - 60	8e-09	Methyl-CpG binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001397)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15790 AT3G15790 AT3G15790
fragaria_vesca	FvH4_1g03020 FvH4_1g03020 FvH4_1g03020 FvH4_1g03020 FvH4_6g29820 FvH4_6g29820 FvH4_6g29820 FvH4_6g29820 FvH4_6g29820 FvH4_6g29820
malus_domestica	MD00G1123000.v1.1 MD02G1029600.v1.1 MD15G1171000.v1.1 MD17G1210700.v1.1
prunus_persica	Prupe.3G086000_v2.0.a1 Prupe.7G245300_v2.0.a1
pyrus_communis	pycom02g02450 pycom09g14100 pycom15g15250 pycom17g21570
rosa_chinensis	RchiOBHm_Chr2g0088151 RchiOBHm_Chr2g0135641
rosa_laevigata	RLG00000015926 RLG00000019474
rosa_multiflora	Rmu_co8260895.1_g000001 Rmu_sc0002398.1_g000036 Rmu_sc0003275.1_g000050
rosa_roxburghii	Rroxscaffold_2G00109020 Rroxscaffold_2G00152920 Rroxscaffold_6G00395860 Rroxscaffold_7G00180210
rosa_rugosa	Rorug01G0481300 Rorug02G0325200
rosa_samantha	Rh2AG036300 Rh2AG376800 Rh2BG035500 Rh2BG076400 Rh2BG383100 Rh2CG036700 Rh2CG078600 Rh2CG362500 Rh2DG036000 Rh2DG399200 Rh5DG523600
rosa_wichuraiana	Rw1G013660 Rw2G002860 Rw2G030730 Rw4G021240 Rw4G021900 Rw7G017350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	284, 633
AcuI	CTGAAG	6 cut(s)	194, 381, 434, 528, 594, 678
AfaI	GTAC	1 cut(s)	477
AfiI	CCNNNNNNNGG	3 cut(s)	466, 548, 597
AgsI	TTSAA	2 cut(s)	671, 791
AjnI	CCWGG	1 cut(s)	184
AleI	CACNNNNGTG	1 cut(s)	186
AluBI	AGCT	7 cut(s)	50, 160, 323, 353, 410, 503, 647
AluI	AGCT	7 cut(s)	50, 160, 323, 353, 410, 503, 647
Alw26I	GTCTC	2 cut(s)	221, 368
AlwI	GGATC	2 cut(s)	284, 633
AoxI	GGCC	1 cut(s)	190
ApeKI	GCWGC	2 cut(s)	197, 813
Asp700I	GAANNNNTTC	1 cut(s)	354
AspS9I	GGNCC	2 cut(s)	191, 653
AsuC2I	CCSGG	1 cut(s)	622
AsuHPI	GGTGA	2 cut(s)	236, 563
AsuII	TTCGAA	1 cut(s)	326
AvaII	GGWCC	1 cut(s)	653
BaeGI	GKGCMC	3 cut(s)	81, 221, 782
BbsI	GAAGAC	1 cut(s)	666
BbvI	GCAGC	2 cut(s)	209, 825
BccI	CCATC	3 cut(s)	283, 427, 590
BceAI	ACGGC	2 cut(s)	138, 835
BciT130I	CCWGG	1 cut(s)	186
BcnI	CCSGG	1 cut(s)	622
BcoDI	GTCTC	2 cut(s)	221, 368
BfaI	CTAG	1 cut(s)	246
BfmI	CTRYAG	1 cut(s)	195
BglII	AGATCT	1 cut(s)	141
BisI	GCNGC	2 cut(s)	198, 814
BlsI	GCNGC	2 cut(s)	199, 815
Bme1390I	CCNGG	2 cut(s)	186, 622
Bme18I	GGWCC	1 cut(s)	653
BmgT120I	GGNCC	2 cut(s)	191, 653
BmiI	GGNNCC	2 cut(s)	126, 589
BmrFI	CCNGG	2 cut(s)	186, 622
BmsI	GCATC	3 cut(s)	209, 388, 472
BpiI	GAAGAC	1 cut(s)	666
BplI	GAGNNNNNCTC	2 cut(s)	128, 160
BpmI	CTGGAG	1 cut(s)	153
Bpu14I	TTCGAA	1 cut(s)	326
BpuMI	CCSGG	1 cut(s)	622
BsaI	GGTCTC	1 cut(s)	221
BsaJI	CCNNGG	4 cut(s)	36, 184, 233, 621
BsaXI	ACNNNNNCTCC	2 cut(s)	17, 47
Bsc4I	CCNNNNNNNGG	3 cut(s)	466, 548, 597
Bse1I	ACTGG	3 cut(s)	136, 226, 655
Bse3DI	GCAATG	1 cut(s)	829
BseBI	CCWGG	1 cut(s)	186
BseDI	CCNNGG	4 cut(s)	36, 184, 233, 621
BseGI	GGATG	2 cut(s)	275, 748
BseLI	CCNNNNNNNGG	3 cut(s)	466, 548, 597
BseMI	GCAATG	1 cut(s)	829
BseMII	CTCAG	2 cut(s)	360, 420
BseNI	ACTGG	3 cut(s)	136, 226, 655
BseRI	GAGGAG	3 cut(s)	38, 152, 386
BseSI	GKGCMC	3 cut(s)	81, 221, 782
BseXI	GCAGC	2 cut(s)	209, 825
BshFI	GGCC	1 cut(s)	192
BsiSI	CCGG	1 cut(s)	621
BslI	CCNNNNNNNGG	3 cut(s)	466, 548, 597
BsmAI	GTCTC	2 cut(s)	221, 368
BsnI	GGCC	1 cut(s)	192
Bso31I	GGTCTC	1 cut(s)	221
Bsp119I	TTCGAA	1 cut(s)	326
Bsp1286I	GDGCHC	3 cut(s)	81, 221, 782
Bsp143I	GATC	5 cut(s)	111, 141, 239, 289, 625
Bsp19I	CCATGG	1 cut(s)	36
BspANI	GGCC	1 cut(s)	192
BspCNI	CTCAG	2 cut(s)	361, 421
BspHI	TCATGA	1 cut(s)	769
BspLI	GGNNCC	2 cut(s)	126, 589
BspMAI	CTGCAG	1 cut(s)	199
BspPI	GGATC	2 cut(s)	284, 633
BspT104I	TTCGAA	1 cut(s)	326
BspTNI	GGTCTC	1 cut(s)	221
BsrDI	GCAATG	1 cut(s)	829
BsrI	ACTGG	3 cut(s)	136, 226, 655
BssECI	CCNNGG	4 cut(s)	36, 184, 233, 621
BssMI	GATC	5 cut(s)	111, 141, 239, 289, 625
BssT1I	CCWWGG	2 cut(s)	36, 233
Bst2UI	CCWGG	1 cut(s)	186
BstBI	TTCGAA	1 cut(s)	326
BstDEI	CTNAG	4 cut(s)	99, 369, 429, 714
BstDSI	CCRYGG	1 cut(s)	36
BstENI	CCTNNNNNAGG	1 cut(s)	546
BstF5I	GGATG	2 cut(s)	275, 748
BstKTI	GATC	5 cut(s)	114, 144, 242, 292, 628
BstMAI	GTCTC	2 cut(s)	221, 368
BstMBI	GATC	5 cut(s)	111, 141, 239, 289, 625
BstMWI	GCNNNNNNNGC	3 cut(s)	407, 644, 819
BstNI	CCWGG	1 cut(s)	186
BstSCI	CCNGG	2 cut(s)	184, 620
BstSFI	CTRYAG	1 cut(s)	195
BstSLI	GKGCMC	3 cut(s)	81, 221, 782
BstV1I	GCAGC	2 cut(s)	209, 825
BstV2I	GAAGAC	1 cut(s)	666
BstX2I	RGATCY	1 cut(s)	141
BstYI	RGATCY	1 cut(s)	141
BsuRI	GGCC	1 cut(s)	192
BtgI	CCRYGG	1 cut(s)	36
BtsCI	GGATG	2 cut(s)	275, 748
BtsIMutI	CAGTG	3 cut(s)	18, 219, 426
CciI	TCATGA	1 cut(s)	769
Cfr13I	GGNCC	2 cut(s)	191, 653
Csp6I	GTAC	1 cut(s)	476
CspCI	CAANNNNNGTGG	3 cut(s)	29, 70, 105
CviAII	CATG	2 cut(s)	37, 770
CviQI	GTAC	1 cut(s)	476
DdeI	CTNAG	4 cut(s)	99, 369, 429, 714
DpnI	GATC	5 cut(s)	113, 143, 241, 291, 627
DpnII	GATC	5 cut(s)	111, 141, 239, 289, 625
Eco130I	CCWWGG	2 cut(s)	36, 233
Eco31I	GGTCTC	1 cut(s)	221
Eco47I	GGWCC	1 cut(s)	653
Eco57I	CTGAAG	6 cut(s)	194, 381, 434, 528, 594, 678
EcoNI	CCTNNNNNAGG	1 cut(s)	546
EcoRII	CCWGG	1 cut(s)	184
EcoT14I	CCWWGG	2 cut(s)	36, 233
ErhI	CCWWGG	2 cut(s)	36, 233
FaeI	CATG	2 cut(s)	40, 773
FaiI	YATR	6 cut(s)	38, 116, 644, 699, 753, 771
FatI	CATG	2 cut(s)	36, 769
Fnu4HI	GCNGC	2 cut(s)	198, 814
FokI	GGATG	2 cut(s)	262, 755
Fsp4HI	GCNGC	2 cut(s)	198, 814
FspBI	CTAG	1 cut(s)	246
GluI	GCNGC	2 cut(s)	198, 814
GsuI	CTGGAG	1 cut(s)	153
HaeIII	GGCC	1 cut(s)	192
HapII	CCGG	1 cut(s)	621
Hin1II	CATG	2 cut(s)	40, 773
HinfI	GANTC	1 cut(s)	773
HpaII	CCGG	1 cut(s)	621
HphI	GGTGA	2 cut(s)	236, 563
Hpy188I	TCNGA	3 cut(s)	205, 414, 630
Hpy188III	TCNNGA	2 cut(s)	359, 770
HpyCH4V	TGCA	3 cut(s)	197, 394, 485
HpyF10VI	GCNNNNNNNGC	3 cut(s)	407, 644, 819
HpyF3I	CTNAG	4 cut(s)	99, 369, 429, 714
Hsp92II	CATG	2 cut(s)	40, 773
Kzo9I	GATC	5 cut(s)	111, 141, 239, 289, 625
LmnI	GCTCC	2 cut(s)	55, 130
Lsp1109I	GCAGC	2 cut(s)	209, 825
LweI	GCATC	3 cut(s)	209, 388, 472
MaeI	CTAG	1 cut(s)	246
MaeIII	GTNAC	4 cut(s)	42, 551, 616, 799
MalI	GATC	5 cut(s)	113, 143, 241, 291, 627
MboI	GATC	5 cut(s)	111, 141, 239, 289, 625
MboII	GAAGA	5 cut(s)	310, 340, 521, 671, 796
MflI	RGATCY	1 cut(s)	141
MhlI	GDGCHC	3 cut(s)	81, 221, 782
MluCI	AATT	1 cut(s)	666
MlyI	GAGTC	1 cut(s)	782
MmeI	TCCRAC	2 cut(s)	41, 152
MroXI	GAANNNNTTC	1 cut(s)	354
MseI	TTAA	2 cut(s)	66, 384
MslI	CAYNNNNRTG	2 cut(s)	186, 431
MspA1I	CMGCKG	1 cut(s)	160
MspI	CCGG	1 cut(s)	621
MspR9I	CCNGG	2 cut(s)	186, 622
MvaI	CCWGG	1 cut(s)	186
MwoI	GCNNNNNNNGC	3 cut(s)	407, 644, 819
NciI	CCSGG	1 cut(s)	622
NcoI	CCATGG	1 cut(s)	36
NdeII	GATC	5 cut(s)	111, 141, 239, 289, 625
NlaIII	CATG	2 cut(s)	40, 773
NlaIV	GGNNCC	2 cut(s)	126, 589
NmuCI	GTSAC	3 cut(s)	551, 616, 799
NspV	TTCGAA	1 cut(s)	326
OliI	CACNNNNGTG	1 cut(s)	186
PagI	TCATGA	1 cut(s)	769
PdmI	GAANNNNTTC	1 cut(s)	354
PflFI	GACNNNGTC	1 cut(s)	7
PkrI	GCNGC	2 cut(s)	199, 815
PleI	GAGTC	1 cut(s)	781
PpsI	GAGTC	1 cut(s)	781
Psp6I	CCWGG	1 cut(s)	184
PspGI	CCWGG	1 cut(s)	184
PspN4I	GGNNCC	2 cut(s)	126, 589
PspPI	GGNCC	2 cut(s)	191, 653
PsrI	GAACNNNNNNTAC	2 cut(s)	522, 554
PstI	CTGCAG	1 cut(s)	199
PsuI	RGATCY	1 cut(s)	141
PsyI	GACNNNGTC	1 cut(s)	7
PvuII	CAGCTG	1 cut(s)	160
RsaI	GTAC	1 cut(s)	477
RsaNI	GTAC	1 cut(s)	476
RseI	CAYNNNNRTG	2 cut(s)	186, 431
SaqAI	TTAA	2 cut(s)	66, 384
SatI	GCNGC	2 cut(s)	198, 814
Sau3AI	GATC	5 cut(s)	111, 141, 239, 289, 625
Sau96I	GGNCC	2 cut(s)	191, 653
SchI	GAGTC	1 cut(s)	782
ScrFI	CCNGG	2 cut(s)	186, 622
SduI	GDGCHC	3 cut(s)	81, 221, 782
SfaNI	GCATC	3 cut(s)	209, 388, 472
SfcI	CTRYAG	1 cut(s)	195
SfuI	TTCGAA	1 cut(s)	326
SinI	GGWCC	1 cut(s)	653
SmiMI	CAYNNNNRTG	2 cut(s)	186, 431
Sse9I	AATT	1 cut(s)	666
SspMI	CTAG	1 cut(s)	246
StyD4I	CCNGG	2 cut(s)	184, 620
StyI	CCWWGG	2 cut(s)	36, 233
TaqI	TCGA	1 cut(s)	326
TasI	AATT	1 cut(s)	666
TatI	WGTACW	1 cut(s)	475
Tru1I	TTAA	2 cut(s)	66, 384
Tru9I	TTAA	2 cut(s)	66, 384
TscAI	CASTG	3 cut(s)	18, 226, 433
TseFI	GTSAC	3 cut(s)	551, 616, 799
TseI	GCWGC	2 cut(s)	197, 813
Tsp45I	GTSAC	3 cut(s)	551, 616, 799
TspDTI	ATGAA	4 cut(s)	543, 561, 597, 758
TspRI	CASTG	3 cut(s)	18, 226, 433
Tth111I	GACNNNGTC	1 cut(s)	7
VpaK11BI	GGWCC	1 cut(s)	653
XagI	CCTNNNNNAGG	1 cut(s)	546
XmnI	GAANNNNTTC	1 cut(s)	354
XspI	CTAG	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.