Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001397

Physical Location & Seq

Genomic Coordinates Reverse (-)

2493357 .. 2495669

Gene Structure 2313 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015926

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGAGCTCCTTGCACTATCTCTCGACCACCACAGTGAATGAATGGTTGAAAATCCAAACCAATCGAGAAGCTCACAAGCGGAGCTGCTCAAGCGTCACAAGCCCTGGCGGTGACTCACAGCCACTTGAAAGCAAAGTGAAAGTGGAAATGGCAAGCACAGTGGAGAAGGAGGAGGTTGTGACCTTAGAGCTACCAGCTCCTTCTGGTTGGATTAAGAAGTTTGTGCCCAAGCAAAGTGGAACTTCTAAGAAAAATGAGATCATATTTACGGCTCCAACTGGAGAGGAGATCTCCAACAAAAAACAGCTGGAACAATACCTGAAGGCACACCCTGGTGGCCCTTCAGTGTCGGAGTTTGATTGGGGCACTGGTGAGACCCCAAGGAGATCGGCTAGGATTAGTGAGAAGGTCAAGGCAACTCCATCCCCAGAAAGTGATCCCCCAAAGAAGCGAAGCAGAAAAACATCAGCTTCAAAGAAGGATAGCAAAGAAAAGGAAGCTGCTCCTCAAGGAACTGAGGAGACAAAAGTTAGTGATGTGCAAGATGCTGATAAAACTGTGAAGGATAACGATACTGAGATGGAAAAGGCTGATGTGAAGGAAAACCAAGATGAGGATAAAGTACAAGATGCAGATACCAAGGCAGAAGTAGCTCCTCCCAAAGAAGCTAAAGTTGATGTAGGAACCAATTATGGGAAGGAAGTTGAGGGTTCTGGCTCTGGAGAACAAAATGAAAAGAAAGGTTTGGAAGGAGGAAAAGTAGAAGAAAAGGTCGGGCAACCACCATCTGAGGTGCAGGAAAAGGAAGTGACTGGGGATCAGGGCAAAGCAGACATAGCTACCGCACATGAGGACAAACATGAAGGAGAAGGAGAGGAAAAAGAAAAACATAATGAAAGTGAAACTAAGGAGAAAGAAGCAGCACAAGGGAAGGATGAGGAACATAAGAGTTCAGGTGTTCATGAGTTGGGCAAGAAGATTGAAGCAGCAGTGACTGACAATGGCAGCAACGGCAATGAGGCTGCGAAGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008327 GO:0036094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044444 GO:0044464 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBD

Protein Analysis

345

Amino Acids

37.35

Weight (kDa)

5.19

Isoelectric Point (pI)

45.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MBD	PF01429	58 - 128	1.8e-15	Methyl-CpG binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001397)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15790 AT3G15790 AT3G15790
fragaria_vesca	FvH4_1g03020 FvH4_1g03020 FvH4_1g03020 FvH4_1g03020 FvH4_6g29820 FvH4_6g29820 FvH4_6g29820 FvH4_6g29820 FvH4_6g29820 FvH4_6g29820
malus_domestica	MD00G1123000.v1.1 MD02G1029600.v1.1 MD15G1171000.v1.1 MD17G1210700.v1.1
prunus_persica	Prupe.3G086000_v2.0.a1 Prupe.7G245300_v2.0.a1
pyrus_communis	pycom02g02450 pycom09g14100 pycom15g15250 pycom17g21570
rosa_chinensis	RchiOBHm_Chr2g0088151 RchiOBHm_Chr2g0135641
rosa_laevigata	RLG00000015926 RLG00000019474
rosa_multiflora	Rmu_co8260895.1_g000001 Rmu_sc0002398.1_g000036 Rmu_sc0003275.1_g000050
rosa_roxburghii	Rroxscaffold_2G00109020 Rroxscaffold_2G00152920 Rroxscaffold_6G00395860 Rroxscaffold_7G00180210
rosa_rugosa	Rorug01G0481300 Rorug02G0325200
rosa_samantha	Rh2AG036300 Rh2AG376800 Rh2BG035500 Rh2BG076400 Rh2BG383100 Rh2CG036700 Rh2CG078600 Rh2CG362500 Rh2DG036000 Rh2DG399200 Rh5DG523600
rosa_wichuraiana	Rw1G013660 Rw2G002860 Rw2G030730 Rw4G021240 Rw4G021900 Rw7G017350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	79, 108, 843
AclWI	GGATC	2 cut(s)	431, 825
AcuI	CTGAAG	2 cut(s)	327, 341
AfaI	GTAC	1 cut(s)	624
AfiI	CCNNNNNNNGG	2 cut(s)	613, 693
AgsI	TTSAA	4 cut(s)	49, 128, 474, 983
AjnI	CCWGG	2 cut(s)	103, 331
AleI	CACNNNNGTG	2 cut(s)	32, 333
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	2 cut(s)	368, 515
AlwI	GGATC	2 cut(s)	431, 825
AlwNI	CAGNNNCTG	1 cut(s)	995
AoxI	GGCC	1 cut(s)	337
ApeKI	GCWGC	6 cut(s)	84, 500, 920, 986, 1005, 1022
AspS9I	GGNCC	1 cut(s)	338
AsuHPI	GGTGA	2 cut(s)	122, 383
BaeGI	GKGCMC	2 cut(s)	228, 368
BanII	GRGCYC	1 cut(s)	8
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	6 cut(s)	71, 487, 932, 998, 1009, 1017
BccI	CCATC	3 cut(s)	430, 574, 793
BceAI	ACGGC	2 cut(s)	285, 1027
BciT130I	CCWGG	2 cut(s)	105, 333
BcoDI	GTCTC	2 cut(s)	368, 515
BfaI	CTAG	1 cut(s)	393
BglII	AGATCT	1 cut(s)	288
BisI	GCNGC	6 cut(s)	85, 501, 921, 987, 1006, 1023
BlsI	GCNGC	6 cut(s)	86, 502, 922, 988, 1007, 1024
Bme1390I	CCNGG	2 cut(s)	105, 333
BmgT120I	GGNCC	1 cut(s)	338
BmiI	GGNNCC	2 cut(s)	273, 685
BmrFI	CCNGG	2 cut(s)	105, 333
BmrI	ACTGGG	1 cut(s)	822
BmsI	GCATC	2 cut(s)	535, 619
BmuI	ACTGGG	1 cut(s)	822
BplI	GAGNNNNNCTC	2 cut(s)	275, 307
BpmI	CTGGAG	2 cut(s)	300, 741
BpuEI	CTTGAG	2 cut(s)	73, 492
BsaI	GGTCTC	1 cut(s)	368
BsaJI	CCNNGG	4 cut(s)	103, 331, 380, 639
BsaXI	ACNNNNNCTCC	2 cut(s)	744, 774
Bsc4I	CCNNNNNNNGG	2 cut(s)	613, 693
Bse1I	ACTGG	3 cut(s)	283, 373, 817
Bse3DI	GCAATG	1 cut(s)	1021
BseBI	CCWGG	2 cut(s)	105, 333
BseDI	CCNNGG	4 cut(s)	103, 331, 380, 639
BseGI	GGATG	2 cut(s)	422, 940
BseLI	CCNNNNNNNGG	2 cut(s)	613, 693
BseMI	GCAATG	1 cut(s)	1021
BseMII	CTCAG	3 cut(s)	507, 567, 780
BseNI	ACTGG	3 cut(s)	283, 373, 817
BseRI	GAGGAG	5 cut(s)	185, 299, 495, 533, 645
BseSI	GKGCMC	2 cut(s)	228, 368
BseXI	GCAGC	6 cut(s)	71, 487, 932, 998, 1009, 1017
BsgI	GTGCAG	1 cut(s)	815
BshFI	GGCC	1 cut(s)	339
BsiHKAI	GWGCWC	1 cut(s)	8
BslI	CCNNNNNNNGG	2 cut(s)	613, 693
BsmAI	GTCTC	2 cut(s)	368, 515
BsnI	GGCC	1 cut(s)	339
Bso31I	GGTCTC	1 cut(s)	368
Bsp1286I	GDGCHC	3 cut(s)	8, 228, 368
Bsp143I	GATC	5 cut(s)	258, 288, 386, 436, 817
BspACI	CCGC	3 cut(s)	79, 108, 843
BspANI	GGCC	1 cut(s)	339
BspCNI	CTCAG	3 cut(s)	508, 568, 781
BspHI	TCATGA	1 cut(s)	961
BspLI	GGNNCC	2 cut(s)	273, 685
BspPI	GGATC	2 cut(s)	431, 825
BspTNI	GGTCTC	1 cut(s)	368
BsrDI	GCAATG	1 cut(s)	1021
BsrI	ACTGG	3 cut(s)	283, 373, 817
BssECI	CCNNGG	4 cut(s)	103, 331, 380, 639
BssMI	GATC	5 cut(s)	258, 288, 386, 436, 817
BssT1I	CCWWGG	2 cut(s)	380, 639
Bst2UI	CCWGG	2 cut(s)	105, 333
Bst4CI	ACNGT	3 cut(s)	34, 160, 559
BstC8I	GCNNGC	1 cut(s)	154
BstDEI	CTNAG	6 cut(s)	184, 246, 516, 576, 789, 906
BstF5I	GGATG	2 cut(s)	422, 940
BstKTI	GATC	5 cut(s)	261, 291, 389, 439, 820
BstMAI	GTCTC	2 cut(s)	368, 515
BstMBI	GATC	5 cut(s)	258, 288, 386, 436, 817
BstMWI	GCNNNNNNNGC	5 cut(s)	90, 99, 650, 836, 1011
BstNI	CCWGG	2 cut(s)	105, 333
BstSCI	CCNGG	2 cut(s)	103, 331
BstSLI	GKGCMC	2 cut(s)	228, 368
BstV1I	GCAGC	6 cut(s)	71, 487, 932, 998, 1009, 1017
BstX2I	RGATCY	1 cut(s)	288
BstYI	RGATCY	1 cut(s)	288
BsuRI	GGCC	1 cut(s)	339
BtsCI	GGATG	2 cut(s)	422, 940
BtsI	GCAGTG	1 cut(s)	996
BtsIMutI	CAGTG	5 cut(s)	39, 165, 351, 366, 996
Cac8I	GCNNGC	1 cut(s)	154
CaiI	CAGNNNCTG	1 cut(s)	995
CciI	TCATGA	1 cut(s)	961
Cfr13I	GGNCC	1 cut(s)	338
CseI	GACGC	1 cut(s)	82
Csp6I	GTAC	1 cut(s)	623
CspCI	CAANNNNNGTGG	4 cut(s)	141, 176, 217, 252
CviAII	CATG	3 cut(s)	848, 860, 962
CviQI	GTAC	1 cut(s)	623
DdeI	CTNAG	6 cut(s)	184, 246, 516, 576, 789, 906
DpnI	GATC	5 cut(s)	260, 290, 388, 438, 819
DpnII	GATC	5 cut(s)	258, 288, 386, 436, 817
Ecl136II	GAGCTC	1 cut(s)	6
Eco130I	CCWWGG	2 cut(s)	380, 639
Eco24I	GRGCYC	1 cut(s)	8
Eco31I	GGTCTC	1 cut(s)	368
Eco53kI	GAGCTC	1 cut(s)	6
Eco57I	CTGAAG	2 cut(s)	327, 341
EcoICRI	GAGCTC	1 cut(s)	6
EcoRII	CCWGG	2 cut(s)	103, 331
EcoT14I	CCWWGG	2 cut(s)	380, 639
EcoT38I	GRGCYC	1 cut(s)	8
ErhI	CCWWGG	2 cut(s)	380, 639
FaeI	CATG	3 cut(s)	851, 863, 965
FaiI	YATR	8 cut(s)	263, 693, 836, 849, 861, 891, 945, 963
FalI	AAGNNNNNCTT	2 cut(s)	226, 258
FatI	CATG	3 cut(s)	847, 859, 961
Fnu4HI	GCNGC	6 cut(s)	85, 501, 921, 987, 1006, 1023
FokI	GGATG	2 cut(s)	409, 947
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	6 cut(s)	85, 501, 921, 987, 1006, 1023
FspBI	CTAG	1 cut(s)	393
GluI	GCNGC	6 cut(s)	85, 501, 921, 987, 1006, 1023
GsuI	CTGGAG	2 cut(s)	300, 741
HaeIII	GGCC	1 cut(s)	339
HgaI	GACGC	1 cut(s)	82
Hin1II	CATG	3 cut(s)	851, 863, 965
HinfI	GANTC	1 cut(s)	113
HphI	GGTGA	2 cut(s)	122, 383
Hpy188I	TCNGA	2 cut(s)	352, 790
Hpy188III	TCNNGA	4 cut(s)	22, 65, 720, 962
HpyCH4III	ACNGT	3 cut(s)	34, 160, 559
HpyCH4V	TGCA	4 cut(s)	13, 541, 632, 796
HpyF10VI	GCNNNNNNNGC	5 cut(s)	90, 99, 650, 836, 1011
HpyF3I	CTNAG	6 cut(s)	184, 246, 516, 576, 789, 906
Hsp92II	CATG	3 cut(s)	851, 863, 965
Kzo9I	GATC	5 cut(s)	258, 288, 386, 436, 817
LmnI	GCTCC	6 cut(s)	11, 81, 202, 277, 508, 658
Lsp1109I	GCAGC	6 cut(s)	71, 487, 932, 998, 1009, 1017
LweI	GCATC	2 cut(s)	535, 619
MaeI	CTAG	1 cut(s)	393
MaeIII	GTNAC	5 cut(s)	94, 110, 178, 808, 991
MalI	GATC	5 cut(s)	260, 290, 388, 438, 819
MboI	GATC	5 cut(s)	258, 288, 386, 436, 817
MboII	GAAGA	2 cut(s)	776, 988
MflI	RGATCY	1 cut(s)	288
MhlI	GDGCHC	3 cut(s)	8, 228, 368
MluCI	AATT	1 cut(s)	688
MlyI	GAGTC	1 cut(s)	107
MmeI	TCCRAC	4 cut(s)	188, 299, 318, 330
MseI	TTAA	1 cut(s)	213
MslI	CAYNNNNRTG	2 cut(s)	32, 333
MspA1I	CMGCKG	1 cut(s)	307
MspR9I	CCNGG	2 cut(s)	105, 333
MvaI	CCWGG	2 cut(s)	105, 333
MwoI	GCNNNNNNNGC	5 cut(s)	90, 99, 650, 836, 1011
NdeII	GATC	5 cut(s)	258, 288, 386, 436, 817
NlaIII	CATG	3 cut(s)	851, 863, 965
NlaIV	GGNNCC	2 cut(s)	273, 685
NmuCI	GTSAC	5 cut(s)	94, 110, 178, 808, 991
OliI	CACNNNNGTG	2 cut(s)	32, 333
PagI	TCATGA	1 cut(s)	961
PkrI	GCNGC	6 cut(s)	86, 502, 922, 988, 1007, 1024
PleI	GAGTC	1 cut(s)	107
PpsI	GAGTC	1 cut(s)	107
Psp124BI	GAGCTC	1 cut(s)	8
Psp6I	CCWGG	2 cut(s)	103, 331
PspGI	CCWGG	2 cut(s)	103, 331
PspN4I	GGNNCC	2 cut(s)	273, 685
PspPI	GGNCC	1 cut(s)	338
PstNI	CAGNNNCTG	1 cut(s)	995
PsuI	RGATCY	1 cut(s)	288
PvuII	CAGCTG	1 cut(s)	307
RsaI	GTAC	1 cut(s)	624
RsaNI	GTAC	1 cut(s)	623
RseI	CAYNNNNRTG	2 cut(s)	32, 333
SacI	GAGCTC	1 cut(s)	8
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	6 cut(s)	85, 501, 921, 987, 1006, 1023
Sau3AI	GATC	5 cut(s)	258, 288, 386, 436, 817
Sau96I	GGNCC	1 cut(s)	338
SchI	GAGTC	1 cut(s)	107
ScrFI	CCNGG	2 cut(s)	105, 333
SduI	GDGCHC	3 cut(s)	8, 228, 368
SfaNI	GCATC	2 cut(s)	535, 619
SmiMI	CAYNNNNRTG	2 cut(s)	32, 333
SmlI	CTYRAG	2 cut(s)	88, 507
SmoI	CTYRAG	2 cut(s)	88, 507
Sse9I	AATT	1 cut(s)	688
SsiI	CCGC	3 cut(s)	79, 108, 843
SspMI	CTAG	1 cut(s)	393
SstI	GAGCTC	1 cut(s)	8
StyD4I	CCNGG	2 cut(s)	103, 331
StyI	CCWWGG	2 cut(s)	380, 639
TaaI	ACNGT	3 cut(s)	34, 160, 559
TaqI	TCGA	2 cut(s)	23, 64
TasI	AATT	1 cut(s)	688
TatI	WGTACW	1 cut(s)	622
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TscAI	CASTG	5 cut(s)	39, 165, 351, 373, 996
TseFI	GTSAC	5 cut(s)	94, 110, 178, 808, 991
TseI	GCWGC	6 cut(s)	84, 500, 920, 986, 1005, 1022
Tsp45I	GTSAC	5 cut(s)	94, 110, 178, 808, 991
TspDTI	ATGAA	5 cut(s)	54, 747, 876, 909, 950
TspRI	CASTG	5 cut(s)	39, 165, 351, 373, 996
XspI	CTAG	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.