Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0001397

Physical Location & Seq

Genomic Coordinates Forward (+)

13462493 .. 13467014

Gene Structure 4522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g14100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGAGAGCAAAGTGGATGAAGTTTCTGTTGAGCTCTCAGCTCCTCCTGCTTGGAAGAAGAAGTTTTGTCCCAAGAAGGGAGGCACACCACGGAAAAATGAAATCATATTCATTTCTCCAACAGGAGAGGAGATTAATAATAAAAAACAATTGGAGCAATACCTAAAAGAACATCCTGGTAACCCTGCAATATCAGAGTTTGATTGGAGCACTGGTGAAACCCCTAGGAGATCGGCTAGGATCAGTGAAAAGGTCAAGATGGCTCCATCACCAGAGAGCGAGCCTCCGATAAAGAGAGGCCGAAAATCATCAGGTTCAAAGGACAAAGTGGAAGCTGCTGGAGAAGCTGATGCTACAAATGAAATTCAAATGAAAGATGCAGAAGTAGATGAGAAGGAAGATGGAGGAAAAACTGAGGAAGAAACTGACCAGACTAAACCAGAGGATGGTAACGATAAGACCCCGACTGATACTAAGGAAACTCTAGGTGAGGAGACAAAGGAAGATGCAGTAGAGGAAAACCCCACAGAGGAAGCAGCTGAAAACAACAAAGAAGATGTACCACAAGCTGAGGGAGAACAAGCAAATGGAACTAATGACAAGAAACAGGATGACACAGCTACTGTGACTGTTGAAGCAAATGGGGCAGCAGAGAAAGATAATCTGTATGGAGCCGCACCTCCTCTGGATGGAGAGATCAAAATGAAACACGATGCAGCAGAGAACGATGGGAAATGCAATGCTCAAGCTGAAGAAAAAATCAAGCCCAAGGACAGGGAGGTTGTTGAAAATGGTAAGGTTGAGCAAGTGGCGCAAGCTGATGCCCCACAACAATTGAGCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008327 GO:0036094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044444 GO:0044464 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBD

Protein Analysis

282

Amino Acids

30.64

Weight (kDa)

4.6

Isoelectric Point (pI)

42.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MBD	PF01429	7 - 76	5.2e-16	Methyl-CpG binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001397)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15790 AT3G15790 AT3G15790
fragaria_vesca	FvH4_1g03020 FvH4_1g03020 FvH4_1g03020 FvH4_1g03020 FvH4_6g29820 FvH4_6g29820 FvH4_6g29820 FvH4_6g29820 FvH4_6g29820 FvH4_6g29820
malus_domestica	MD00G1123000.v1.1 MD02G1029600.v1.1 MD15G1171000.v1.1 MD17G1210700.v1.1
prunus_persica	Prupe.3G086000_v2.0.a1 Prupe.7G245300_v2.0.a1
pyrus_communis	pycom02g02450 pycom09g14100 pycom15g15250 pycom17g21570
rosa_chinensis	RchiOBHm_Chr2g0088151 RchiOBHm_Chr2g0135641
rosa_laevigata	RLG00000015926 RLG00000019474
rosa_multiflora	Rmu_co8260895.1_g000001 Rmu_sc0002398.1_g000036 Rmu_sc0003275.1_g000050
rosa_roxburghii	Rroxscaffold_2G00109020 Rroxscaffold_2G00152920 Rroxscaffold_6G00395860 Rroxscaffold_7G00180210
rosa_rugosa	Rorug01G0481300 Rorug02G0325200
rosa_samantha	Rh2AG036300 Rh2AG376800 Rh2BG035500 Rh2BG076400 Rh2BG383100 Rh2CG036700 Rh2CG078600 Rh2CG362500 Rh2DG036000 Rh2DG399200 Rh5DG523600
rosa_wichuraiana	Rw1G013660 Rw2G002860 Rw2G030730 Rw4G021240 Rw4G021900 Rw7G017350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	446
AciI	CCGC	1 cut(s)	675
AclWI	GGATC	1 cut(s)	248
AcsI	RAATTY	1 cut(s)	363
AcuI	CTGAAG	1 cut(s)	771
AfaI	GTAC	1 cut(s)	561
AfiI	CCNNNNNNNGG	5 cut(s)	77, 446, 529, 689, 774
AgsI	TTSAA	4 cut(s)	318, 368, 635, 788
AjnI	CCWGG	1 cut(s)	175
Alw21I	GWGCWC	2 cut(s)	36, 212
Alw26I	GTCTC	1 cut(s)	488
AlwI	GGATC	1 cut(s)	248
AlwNI	CAGNNNCTG	1 cut(s)	623
AoxI	GGCC	1 cut(s)	298
ApeKI	GCWGC	5 cut(s)	335, 536, 647, 716, 840
ApoI	RAATTY	1 cut(s)	363
AseI	ATTAAT	1 cut(s)	135
AspA2I	CCTAGG	1 cut(s)	224
AspLEI	GCGC	1 cut(s)	814
AsuHPI	GGTGA	3 cut(s)	227, 261, 500
AvrII	CCTAGG	1 cut(s)	224
BanII	GRGCYC	1 cut(s)	36
Bbv12I	GWGCWC	2 cut(s)	36, 212
BbvCI	CCTCAGC	1 cut(s)	570
BbvI	GCAGC	4 cut(s)	322, 548, 659, 728
BccI	CCATC	6 cut(s)	253, 274, 395, 440, 683, 722
BciT130I	CCWGG	1 cut(s)	177
BcoDI	GTCTC	1 cut(s)	488
BfaI	CTAG	3 cut(s)	225, 237, 485
BisI	GCNGC	6 cut(s)	336, 537, 648, 675, 717, 841
BlnI	CCTAGG	1 cut(s)	224
BlsI	GCNGC	6 cut(s)	337, 538, 649, 676, 718, 842
Bme1390I	CCNGG	1 cut(s)	177
BmiI	GGNNCC	2 cut(s)	264, 673
BmrFI	CCNGG	1 cut(s)	177
BmsI	GCATC	5 cut(s)	340, 367, 496, 703, 811
BplI	GAGNNNNNCTC	2 cut(s)	268, 300
BpmI	CTGGAG	1 cut(s)	360
Bpu10I	CCTNAGC	1 cut(s)	570
BpuEI	CTTGAG	1 cut(s)	729
BsaJI	CCNNGG	3 cut(s)	89, 224, 768
BsaXI	ACNNNNNCTCC	2 cut(s)	199, 229
Bsc4I	CCNNNNNNNGG	5 cut(s)	77, 446, 529, 689, 774
Bse1I	ACTGG	1 cut(s)	217
Bse3DI	GCAATG	1 cut(s)	745
BseBI	CCWGG	1 cut(s)	177
BseDI	CCNNGG	3 cut(s)	89, 224, 768
BseGI	GGATG	5 cut(s)	22, 172, 451, 616, 694
BseLI	CCNNNNNNNGG	5 cut(s)	77, 446, 529, 689, 774
BseMI	GCAATG	1 cut(s)	745
BseMII	CTCAG	3 cut(s)	51, 405, 561
BseNI	ACTGG	1 cut(s)	217
BseRI	GAGGAG	4 cut(s)	33, 143, 506, 672
BseXI	GCAGC	4 cut(s)	322, 548, 659, 728
BshFI	GGCC	1 cut(s)	300
BsiHKAI	GWGCWC	2 cut(s)	36, 212
BslFI	GGGAC	1 cut(s)	54
BslI	CCNNNNNNNGG	5 cut(s)	77, 446, 529, 689, 774
BsmAI	GTCTC	1 cut(s)	488
BsmFI	GGGAC	1 cut(s)	54
BsnI	GGCC	1 cut(s)	300
Bsp1286I	GDGCHC	2 cut(s)	36, 212
Bsp143I	GATC	3 cut(s)	230, 240, 696
BspACI	CCGC	1 cut(s)	675
BspANI	GGCC	1 cut(s)	300
BspCNI	CTCAG	3 cut(s)	50, 406, 562
BspLI	GGNNCC	2 cut(s)	264, 673
BspPI	GGATC	1 cut(s)	248
BsrDI	GCAATG	1 cut(s)	745
BsrI	ACTGG	1 cut(s)	217
BssECI	CCNNGG	3 cut(s)	89, 224, 768
BssMI	GATC	3 cut(s)	230, 240, 696
BssT1I	CCWWGG	2 cut(s)	224, 768
Bst2UI	CCWGG	1 cut(s)	177
Bst4CI	ACNGT	2 cut(s)	625, 631
BstC8I	GCNNGC	2 cut(s)	281, 816
BstDEI	CTNAG	4 cut(s)	37, 414, 474, 570
BstDSI	CCRYGG	1 cut(s)	89
BstEII	GGTNACC	1 cut(s)	179
BstF5I	GGATG	5 cut(s)	22, 172, 451, 616, 694
BstHHI	GCGC	1 cut(s)	814
BstKTI	GATC	3 cut(s)	233, 243, 699
BstMAI	GTCTC	1 cut(s)	488
BstMBI	GATC	3 cut(s)	230, 240, 696
BstMWI	GCNNNNNNNGC	4 cut(s)	47, 344, 644, 811
BstNI	CCWGG	1 cut(s)	177
BstPI	GGTNACC	1 cut(s)	179
BstSCI	CCNGG	1 cut(s)	175
BstV1I	GCAGC	4 cut(s)	322, 548, 659, 728
BsuRI	GGCC	1 cut(s)	300
BtgI	CCRYGG	1 cut(s)	89
BtsCI	GGATG	5 cut(s)	22, 172, 451, 616, 694
BtsIMutI	CAGTG	2 cut(s)	210, 250
Cac8I	GCNNGC	2 cut(s)	281, 816
CaiI	CAGNNNCTG	1 cut(s)	623
CfoI	GCGC	1 cut(s)	814
Csp6I	GTAC	1 cut(s)	560
CspCI	CAANNNNNGTGG	1 cut(s)	816
CviQI	GTAC	1 cut(s)	560
DdeI	CTNAG	4 cut(s)	37, 414, 474, 570
DpnI	GATC	3 cut(s)	232, 242, 698
DpnII	GATC	3 cut(s)	230, 240, 696
Ecl136II	GAGCTC	1 cut(s)	34
Eco130I	CCWWGG	2 cut(s)	224, 768
Eco24I	GRGCYC	1 cut(s)	36
Eco53kI	GAGCTC	1 cut(s)	34
Eco57I	CTGAAG	1 cut(s)	771
Eco91I	GGTNACC	1 cut(s)	179
EcoICRI	GAGCTC	1 cut(s)	34
EcoO65I	GGTNACC	1 cut(s)	179
EcoRII	CCWGG	1 cut(s)	175
EcoT14I	CCWWGG	2 cut(s)	224, 768
EcoT38I	GRGCYC	1 cut(s)	36
ErhI	CCWWGG	2 cut(s)	224, 768
FaiI	YATR	2 cut(s)	107, 669
FaqI	GGGAC	1 cut(s)	54
Fnu4HI	GCNGC	6 cut(s)	336, 537, 648, 675, 717, 841
FokI	GGATG	5 cut(s)	29, 159, 458, 623, 701
FriOI	GRGCYC	1 cut(s)	36
Fsp4HI	GCNGC	6 cut(s)	336, 537, 648, 675, 717, 841
FspBI	CTAG	3 cut(s)	225, 237, 485
GlaI	GCGC	1 cut(s)	813
GluI	GCNGC	6 cut(s)	336, 537, 648, 675, 717, 841
GsuI	CTGGAG	1 cut(s)	360
HaeIII	GGCC	1 cut(s)	300
HhaI	GCGC	1 cut(s)	814
Hin6I	GCGC	1 cut(s)	812
HinP1I	GCGC	1 cut(s)	812
HphI	GGTGA	3 cut(s)	227, 261, 500
Hpy188I	TCNGA	2 cut(s)	196, 288
Hpy188III	TCNNGA	2 cut(s)	256, 686
HpyAV	CCTTC	2 cut(s)	70, 388
HpyCH4III	ACNGT	2 cut(s)	625, 631
HpyCH4V	TGCA	5 cut(s)	188, 380, 509, 716, 738
HpyF10VI	GCNNNNNNNGC	4 cut(s)	47, 344, 644, 811
HpyF3I	CTNAG	4 cut(s)	37, 414, 474, 570
HspAI	GCGC	1 cut(s)	812
Kzo9I	GATC	3 cut(s)	230, 240, 696
LmnI	GCTCC	5 cut(s)	46, 154, 207, 268, 671
Lsp1109I	GCAGC	4 cut(s)	322, 548, 659, 728
LweI	GCATC	5 cut(s)	340, 367, 496, 703, 811
MaeI	CTAG	3 cut(s)	225, 237, 485
MaeIII	GTNAC	3 cut(s)	179, 449, 625
MalI	GATC	3 cut(s)	232, 242, 698
MboI	GATC	3 cut(s)	230, 240, 696
MboII	GAAGA	7 cut(s)	67, 70, 410, 431, 515, 566, 764
MfeI	CAATTG	2 cut(s)	149, 833
MhlI	GDGCHC	2 cut(s)	36, 212
MluCI	AATT	3 cut(s)	149, 363, 833
MmeI	TCCRAC	1 cut(s)	143
MseI	TTAA	1 cut(s)	135
MspA1I	CMGCKG	2 cut(s)	539, 843
MspR9I	CCNGG	1 cut(s)	177
MunI	CAATTG	2 cut(s)	149, 833
MvaI	CCWGG	1 cut(s)	177
MwoI	GCNNNNNNNGC	4 cut(s)	47, 344, 644, 811
NdeII	GATC	3 cut(s)	230, 240, 696
NlaIV	GGNNCC	2 cut(s)	264, 673
NmuCI	GTSAC	1 cut(s)	625
PflMI	CCANNNNNTGG	1 cut(s)	446
PkrI	GCNGC	6 cut(s)	337, 538, 649, 676, 718, 842
PshBI	ATTAAT	1 cut(s)	135
Psp124BI	GAGCTC	1 cut(s)	36
Psp6I	CCWGG	1 cut(s)	175
PspEI	GGTNACC	1 cut(s)	179
PspGI	CCWGG	1 cut(s)	175
PspN4I	GGNNCC	2 cut(s)	264, 673
PstNI	CAGNNNCTG	1 cut(s)	623
PvuII	CAGCTG	2 cut(s)	539, 843
RsaI	GTAC	1 cut(s)	561
RsaNI	GTAC	1 cut(s)	560
SacI	GAGCTC	1 cut(s)	36
SaqAI	TTAA	1 cut(s)	135
SatI	GCNGC	6 cut(s)	336, 537, 648, 675, 717, 841
Sau3AI	GATC	3 cut(s)	230, 240, 696
ScrFI	CCNGG	1 cut(s)	177
SduI	GDGCHC	2 cut(s)	36, 212
SfaNI	GCATC	5 cut(s)	340, 367, 496, 703, 811
SmlI	CTYRAG	1 cut(s)	744
SmoI	CTYRAG	1 cut(s)	744
Sse9I	AATT	3 cut(s)	149, 363, 833
SsiI	CCGC	1 cut(s)	675
SspMI	CTAG	3 cut(s)	225, 237, 485
SstI	GAGCTC	1 cut(s)	36
StyD4I	CCNGG	1 cut(s)	175
StyI	CCWWGG	2 cut(s)	224, 768
TaaI	ACNGT	2 cut(s)	625, 631
TasI	AATT	3 cut(s)	149, 363, 833
TauI	GCSGC	1 cut(s)	677
Tru1I	TTAA	1 cut(s)	135
Tru9I	TTAA	1 cut(s)	135
TscAI	CASTG	2 cut(s)	217, 250
TseFI	GTSAC	1 cut(s)	625
TseI	GCWGC	5 cut(s)	335, 536, 647, 716, 840
Tsp45I	GTSAC	1 cut(s)	625
TspDTI	ATGAA	6 cut(s)	33, 100, 114, 375, 386, 719
TspGWI	ACGGA	1 cut(s)	106
TspRI	CASTG	2 cut(s)	217, 250
Van91I	CCANNNNNTGG	1 cut(s)	446
VspI	ATTAAT	1 cut(s)	135
XapI	RAATTY	1 cut(s)	363
XmaJI	CCTAGG	1 cut(s)	224
XspI	CTAG	3 cut(s)	225, 237, 485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.