Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001397

Physical Location & Seq

Genomic Coordinates Forward (+)

89765430 .. 89767110

Gene Structure 1681 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00152920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGCAAGCTCAGTGGAGAAGGAGGAGGTTGTGACCTTAGAGCTACCAGCTCCTTCTGGTTGGATTAAGAAGGTCAAAAGTGTTGGTCTTGATAGAGGAGTTCATTTGGAGGTTTGGATTTTGAATGAGTTGGGATTTACAGGTTTTGTGATTTCGTTTGGCAGTGATCTTTTAGAGAATTGTATTTCTGATTTATCTCACATGAAGTTTGGGATCGGGTTTGTTGGCAGTAGTGTTACAACATTAGAGATGTTATCTGATATGTTTGTGCCCAAGCAAAGTGGAACTCCCAAGAAAAATGAGATCATATTTACGGCTCCAACTGGAGAGGAGATCTCCAACAAAAAACAGCTGGAACAATACCTGAAGGCACACCCTGGTGGCCCTTCAGTGTCGGAGTTTGATTGGGGCACTGGTGAGACCCCAAGGAGATCGGCTAGGATTAGTGAGAAGGTCAAGGCAACTCCATCCCCAGAAAGTGATCCCCCAAAGAAGCGAAGCAGAAAAACATCAGCTTCGAAGAAGGATAGCAAAGAAAAGGAAGCTGCTCCTCAAGGAACTGAGGAGACAAAAGTTGGTCACGTGCAAGATGCTGATAAAGCTGTGAAGGATAATGATACTGAGATGGAAAAGGCTGATGTGAAGGAAAACCAAGATGAGGATAAAGTACAAGATGCAGATACCAAGGCAGAAGTAGCTCCTCCCGAAGAAGCTAAAGTTGATGTAGGAACCAATGATGGGAAGGAAGTTGAGGGTTCTGGCTCTGGAGAACAAAATGAAAAGAAAGGTTTGGAAGGAGGAAAAGTAGAAGAAAAGGTCGGGCAACCACCGTCTGAGGTGCAGGAAAAGGAAGTGACCGGGGATCAGGGCAAAGCAGACATAGCTACTGCACATGAGGACAAACATGAAGGAGAAGGAGAGGAAAAAGAAAAACATAATGAAAGTGAAACTAAGGAGAAAGCAGCAGCACAAGGGAAGGATGAGGAACATAAGAGTTCAGGTGTTCATGAGTTAGGCAAGAAGATTGAAGCAGCAGTGACTGACAATTGCAGCAACGGCAATGAGGCTGCGAAGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008327 GO:0036094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044444 GO:0044464 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBD

Protein Analysis

359

Amino Acids

38.75

Weight (kDa)

4.95

Isoelectric Point (pI)

36.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MBD	PF01429	88 - 143	1e-09	Methyl-CpG binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001397)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15790 AT3G15790 AT3G15790
fragaria_vesca	FvH4_1g03020 FvH4_1g03020 FvH4_1g03020 FvH4_1g03020 FvH4_6g29820 FvH4_6g29820 FvH4_6g29820 FvH4_6g29820 FvH4_6g29820 FvH4_6g29820
malus_domestica	MD00G1123000.v1.1 MD02G1029600.v1.1 MD15G1171000.v1.1 MD17G1210700.v1.1
prunus_persica	Prupe.3G086000_v2.0.a1 Prupe.7G245300_v2.0.a1
pyrus_communis	pycom02g02450 pycom09g14100 pycom15g15250 pycom17g21570
rosa_chinensis	RchiOBHm_Chr2g0088151 RchiOBHm_Chr2g0135641
rosa_laevigata	RLG00000015926 RLG00000019474
rosa_multiflora	Rmu_co8260895.1_g000001 Rmu_sc0002398.1_g000036 Rmu_sc0003275.1_g000050
rosa_roxburghii	Rroxscaffold_2G00109020 Rroxscaffold_2G00152920 Rroxscaffold_6G00395860 Rroxscaffold_7G00180210
rosa_rugosa	Rorug01G0481300 Rorug02G0325200
rosa_samantha	Rh2AG036300 Rh2AG376800 Rh2BG035500 Rh2BG076400 Rh2BG383100 Rh2CG036700 Rh2CG078600 Rh2CG362500 Rh2DG036000 Rh2DG399200 Rh5DG523600
rosa_wichuraiana	Rw1G013660 Rw2G002860 Rw2G030730 Rw4G021240 Rw4G021900 Rw7G017350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	221, 476, 870
AcuI	CTGAAG	2 cut(s)	372, 386
AcvI	CACGTG	1 cut(s)	583
AfaI	GTAC	1 cut(s)	669
AfiI	CCNNNNNNNGG	2 cut(s)	658, 738
AgsI	TTSAA	2 cut(s)	124, 1028
AjnI	CCWGG	1 cut(s)	376
AleI	CACNNNNGTG	1 cut(s)	378
Alw26I	GTCTC	2 cut(s)	413, 560
AlwI	GGATC	3 cut(s)	221, 476, 870
AlwNI	CAGNNNCTG	1 cut(s)	1040
AoxI	GGCC	1 cut(s)	382
ApeKI	GCWGC	6 cut(s)	545, 962, 965, 1031, 1050, 1067
AspS9I	GGNCC	1 cut(s)	383
AsuC2I	CCSGG	1 cut(s)	859
AsuHPI	GGTGA	1 cut(s)	428
AsuII	TTCGAA	1 cut(s)	518
BaeGI	GKGCMC	2 cut(s)	273, 413
BbrPI	CACGTG	1 cut(s)	583
BbvI	GCAGC	6 cut(s)	532, 974, 977, 1043, 1054, 1062
BccI	CCATC	3 cut(s)	475, 619, 731
BceAI	ACGGC	2 cut(s)	330, 1072
BciT130I	CCWGG	1 cut(s)	378
BcnI	CCSGG	1 cut(s)	859
BcoDI	GTCTC	2 cut(s)	413, 560
BfaI	CTAG	1 cut(s)	438
BglII	AGATCT	1 cut(s)	333
BisI	GCNGC	6 cut(s)	546, 963, 966, 1032, 1051, 1068
BlsI	GCNGC	6 cut(s)	547, 964, 967, 1033, 1052, 1069
Bme1390I	CCNGG	2 cut(s)	378, 859
BmgT120I	GGNCC	1 cut(s)	383
BmiI	GGNNCC	2 cut(s)	318, 730
BmrFI	CCNGG	2 cut(s)	378, 859
BmsI	GCATC	2 cut(s)	580, 664
BplI	GAGNNNNNCTC	2 cut(s)	320, 352
BpmI	CTGGAG	2 cut(s)	345, 786
Bpu14I	TTCGAA	1 cut(s)	518
BpuEI	CTTGAG	1 cut(s)	537
BpuMI	CCSGG	1 cut(s)	859
BsaAI	YACGTR	1 cut(s)	583
BsaI	GGTCTC	1 cut(s)	413
BsaJI	CCNNGG	4 cut(s)	376, 425, 684, 858
BsaXI	ACNNNNNCTCC	2 cut(s)	789, 819
Bsc4I	CCNNNNNNNGG	2 cut(s)	658, 738
Bse1I	ACTGG	2 cut(s)	328, 418
Bse3DI	GCAATG	1 cut(s)	1066
BseBI	CCWGG	1 cut(s)	378
BseDI	CCNNGG	4 cut(s)	376, 425, 684, 858
BseGI	GGATG	2 cut(s)	467, 985
BseLI	CCNNNNNNNGG	2 cut(s)	658, 738
BseMI	GCAATG	1 cut(s)	1066
BseMII	CTCAG	4 cut(s)	24, 552, 612, 825
BseNI	ACTGG	2 cut(s)	328, 418
BseRI	GAGGAG	6 cut(s)	38, 111, 344, 540, 578, 690
BseSI	GKGCMC	2 cut(s)	273, 413
BseXI	GCAGC	6 cut(s)	532, 974, 977, 1043, 1054, 1062
BsgI	GTGCAG	2 cut(s)	860, 873
BshFI	GGCC	1 cut(s)	384
BsiSI	CCGG	1 cut(s)	858
BslI	CCNNNNNNNGG	2 cut(s)	658, 738
BsmAI	GTCTC	2 cut(s)	413, 560
BsnI	GGCC	1 cut(s)	384
Bso31I	GGTCTC	1 cut(s)	413
Bsp119I	TTCGAA	1 cut(s)	518
Bsp1286I	GDGCHC	2 cut(s)	273, 413
Bsp143I	GATC	7 cut(s)	166, 213, 303, 333, 431, 481, 862
BspANI	GGCC	1 cut(s)	384
BspCNI	CTCAG	4 cut(s)	23, 553, 613, 826
BspHI	TCATGA	1 cut(s)	1006
BspLI	GGNNCC	2 cut(s)	318, 730
BspPI	GGATC	3 cut(s)	221, 476, 870
BspT104I	TTCGAA	1 cut(s)	518
BspTNI	GGTCTC	1 cut(s)	413
BsrDI	GCAATG	1 cut(s)	1066
BsrI	ACTGG	2 cut(s)	328, 418
BssECI	CCNNGG	4 cut(s)	376, 425, 684, 858
BssMI	GATC	7 cut(s)	166, 213, 303, 333, 431, 481, 862
BssT1I	CCWWGG	2 cut(s)	425, 684
Bst2UI	CCWGG	1 cut(s)	378
Bst4CI	ACNGT	1 cut(s)	831
BstBAI	YACGTR	1 cut(s)	583
BstBI	TTCGAA	1 cut(s)	518
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	6 cut(s)	10, 37, 561, 621, 834, 951
BstF5I	GGATG	2 cut(s)	467, 985
BstKTI	GATC	7 cut(s)	169, 216, 306, 336, 434, 484, 865
BstMAI	GTCTC	2 cut(s)	413, 560
BstMBI	GATC	7 cut(s)	166, 213, 303, 333, 431, 481, 862
BstMWI	GCNNNNNNNGC	4 cut(s)	599, 695, 881, 1056
BstNI	CCWGG	1 cut(s)	378
BstSCI	CCNGG	2 cut(s)	376, 857
BstSLI	GKGCMC	2 cut(s)	273, 413
BstV1I	GCAGC	6 cut(s)	532, 974, 977, 1043, 1054, 1062
BstX2I	RGATCY	1 cut(s)	333
BstYI	RGATCY	1 cut(s)	333
BsuRI	GGCC	1 cut(s)	384
BtsCI	GGATG	2 cut(s)	467, 985
BtsI	GCAGTG	2 cut(s)	169, 1041
BtsIMutI	CAGTG	5 cut(s)	18, 169, 396, 411, 1041
Cac8I	GCNNGC	1 cut(s)	7
CaiI	CAGNNNCTG	1 cut(s)	1040
CciI	TCATGA	1 cut(s)	1006
Cfr13I	GGNCC	1 cut(s)	383
Csp6I	GTAC	1 cut(s)	668
CspCI	CAANNNNNGTGG	3 cut(s)	29, 262, 297
CviAII	CATG	4 cut(s)	202, 893, 905, 1007
CviQI	GTAC	1 cut(s)	668
DdeI	CTNAG	6 cut(s)	10, 37, 561, 621, 834, 951
DpnI	GATC	7 cut(s)	168, 215, 305, 335, 433, 483, 864
DpnII	GATC	7 cut(s)	166, 213, 303, 333, 431, 481, 862
Eco130I	CCWWGG	2 cut(s)	425, 684
Eco31I	GGTCTC	1 cut(s)	413
Eco57I	CTGAAG	2 cut(s)	372, 386
Eco72I	CACGTG	1 cut(s)	583
EcoRII	CCWGG	1 cut(s)	376
EcoT14I	CCWWGG	2 cut(s)	425, 684
ErhI	CCWWGG	2 cut(s)	425, 684
FaeI	CATG	4 cut(s)	205, 896, 908, 1010
FaiI	YATR	9 cut(s)	203, 263, 308, 881, 894, 906, 936, 990, 1008
FatI	CATG	4 cut(s)	201, 892, 904, 1006
Fnu4HI	GCNGC	6 cut(s)	546, 963, 966, 1032, 1051, 1068
FokI	GGATG	2 cut(s)	454, 992
Fsp4HI	GCNGC	6 cut(s)	546, 963, 966, 1032, 1051, 1068
FspBI	CTAG	1 cut(s)	438
GluI	GCNGC	6 cut(s)	546, 963, 966, 1032, 1051, 1068
GsuI	CTGGAG	2 cut(s)	345, 786
HaeIII	GGCC	1 cut(s)	384
HapII	CCGG	1 cut(s)	858
Hin1II	CATG	4 cut(s)	205, 896, 908, 1010
HpaII	CCGG	1 cut(s)	858
HphI	GGTGA	1 cut(s)	428
Hpy188I	TCNGA	4 cut(s)	190, 259, 397, 835
Hpy188III	TCNNGA	4 cut(s)	89, 704, 765, 1007
HpyCH4III	ACNGT	1 cut(s)	831
HpyCH4IV	ACGT	1 cut(s)	582
HpyCH4V	TGCA	5 cut(s)	586, 677, 841, 890, 1050
HpyF10VI	GCNNNNNNNGC	4 cut(s)	599, 695, 881, 1056
HpyF3I	CTNAG	6 cut(s)	10, 37, 561, 621, 834, 951
HpySE526I	ACGT	1 cut(s)	582
Hsp92II	CATG	4 cut(s)	205, 896, 908, 1010
Kzo9I	GATC	7 cut(s)	166, 213, 303, 333, 431, 481, 862
LmnI	GCTCC	4 cut(s)	55, 322, 553, 703
Lsp1109I	GCAGC	6 cut(s)	532, 974, 977, 1043, 1054, 1062
LweI	GCATC	2 cut(s)	580, 664
MaeI	CTAG	1 cut(s)	438
MaeII	ACGT	1 cut(s)	582
MaeIII	GTNAC	5 cut(s)	31, 235, 578, 853, 1036
MalI	GATC	7 cut(s)	168, 215, 305, 335, 433, 483, 864
MboI	GATC	7 cut(s)	166, 213, 303, 333, 431, 481, 862
MboII	GAAGA	4 cut(s)	532, 719, 821, 1033
MfeI	CAATTG	1 cut(s)	1045
MflI	RGATCY	1 cut(s)	333
MhlI	GDGCHC	2 cut(s)	273, 413
MluCI	AATT	2 cut(s)	178, 1045
MmeI	TCCRAC	4 cut(s)	41, 344, 363, 375
MseI	TTAA	1 cut(s)	66
MslI	CAYNNNNRTG	1 cut(s)	378
MspA1I	CMGCKG	1 cut(s)	352
MspI	CCGG	1 cut(s)	858
MspR9I	CCNGG	2 cut(s)	378, 859
MunI	CAATTG	1 cut(s)	1045
MvaI	CCWGG	1 cut(s)	378
MwoI	GCNNNNNNNGC	4 cut(s)	599, 695, 881, 1056
NciI	CCSGG	1 cut(s)	859
NdeII	GATC	7 cut(s)	166, 213, 303, 333, 431, 481, 862
NlaIII	CATG	4 cut(s)	205, 896, 908, 1010
NlaIV	GGNNCC	2 cut(s)	318, 730
NmuCI	GTSAC	4 cut(s)	31, 578, 853, 1036
NspV	TTCGAA	1 cut(s)	518
OliI	CACNNNNGTG	1 cut(s)	378
PagI	TCATGA	1 cut(s)	1006
PkrI	GCNGC	6 cut(s)	547, 964, 967, 1033, 1052, 1069
PmaCI	CACGTG	1 cut(s)	583
PmlI	CACGTG	1 cut(s)	583
Ppu21I	YACGTR	1 cut(s)	583
Psp6I	CCWGG	1 cut(s)	376
PspCI	CACGTG	1 cut(s)	583
PspGI	CCWGG	1 cut(s)	376
PspN4I	GGNNCC	2 cut(s)	318, 730
PspPI	GGNCC	1 cut(s)	383
PstNI	CAGNNNCTG	1 cut(s)	1040
PsuI	RGATCY	1 cut(s)	333
PvuII	CAGCTG	1 cut(s)	352
RsaI	GTAC	1 cut(s)	669
RsaNI	GTAC	1 cut(s)	668
RseI	CAYNNNNRTG	1 cut(s)	378
SaqAI	TTAA	1 cut(s)	66
SatI	GCNGC	6 cut(s)	546, 963, 966, 1032, 1051, 1068
Sau3AI	GATC	7 cut(s)	166, 213, 303, 333, 431, 481, 862
Sau96I	GGNCC	1 cut(s)	383
ScrFI	CCNGG	2 cut(s)	378, 859
SduI	GDGCHC	2 cut(s)	273, 413
SfaNI	GCATC	2 cut(s)	580, 664
SfuI	TTCGAA	1 cut(s)	518
SmiMI	CAYNNNNRTG	1 cut(s)	378
SmlI	CTYRAG	1 cut(s)	552
SmoI	CTYRAG	1 cut(s)	552
Sse9I	AATT	2 cut(s)	178, 1045
SspMI	CTAG	1 cut(s)	438
StyD4I	CCNGG	2 cut(s)	376, 857
StyI	CCWWGG	2 cut(s)	425, 684
TaaI	ACNGT	1 cut(s)	831
TaiI	ACGT	1 cut(s)	585
TaqI	TCGA	1 cut(s)	518
TasI	AATT	2 cut(s)	178, 1045
TatI	WGTACW	1 cut(s)	667
Tru1I	TTAA	1 cut(s)	66
Tru9I	TTAA	1 cut(s)	66
TscAI	CASTG	5 cut(s)	18, 169, 396, 418, 1041
TseFI	GTSAC	4 cut(s)	31, 578, 853, 1036
TseI	GCWGC	6 cut(s)	545, 962, 965, 1031, 1050, 1067
Tsp45I	GTSAC	4 cut(s)	31, 578, 853, 1036
TspDTI	ATGAA	6 cut(s)	92, 218, 792, 921, 954, 995
TspRI	CASTG	5 cut(s)	18, 169, 396, 418, 1041
XspI	CTAG	1 cut(s)	438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.