Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0001397

Physical Location & Seq

Genomic Coordinates Reverse (-)

1513582 .. 1517097

Gene Structure 3516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g02450.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGAGTCTCCACATACTGCAATTAAGCCCATGAAATTGGGCCTCAAGGTGGGAAGTGAAATGGCGAGCTCAGTGGAGAAGGAGGGTGGGAAGGAGGAGGTTGTGTCCTTGGAACTTCCAGCTCCTTCTGGTTGGGTGAAGAAGTTTCTGCCCAGGCAAAGTGGAACTCCTAAGAAAAATGAGATCGTATTTACAGCCCCAACGGGAGAAGAGATCACCAGCAAAAGGCAGTTGGAACAGTACCTGAAAGCACACCCCGGTGGTCCTGCGGCATCAGAATTTGACTGGGGCACTGGTGAGACACCAAGGCGGTCAGCAAGGATTAGTGAGAAGGCCAAAGCAACTCCACCGCCAATAGAAAGTGAGCCCCCAAAGAAGCGAAGCAGAAAATCAACTTCGGCAAAGAAGGAGGACAAAGAAAAGGAAGCTGCTCCTGAAGGAGGTGAGGAGACAAAAATTAGTGACCTGCAAGATGCTGGAAAAGCTGAGAAGGATGCAGATACTGAGATGGAAAAGGTTGACGTGAAGGAAAACCAAGATGAGGAAAAAGCACCAGCTCCTCCTGAAGAAGCCAAAGTTCAACAAGAAGTTAATGTACCCGGCTATGCTGCGGCTCCGGGAGATTCAAAAGCATCTGTTGATGGGAAGGAGGTTGAAGGGGAAAAAGAAGAAACGGTCAAGCAACCACCTGTTGAGGCAGGGAAAGAGGAAGTGGCAGGGGATCAGGGCAAACCCGGCATTGCTATTGCTGATGATGACAAACATGAAGGAGAAGGAGAGGGAAAAAAGAAACATGGCAAAGAGACCGCAGTAGAAAATATGGAGAAAGTAACAGTGAAAGGGAATGGCGAGGAACATATTAGTTCAGGCGTTCATGAAGCGGGAAGAAGGTTGAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008327 GO:0036094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044444 GO:0044464 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBD

Protein Analysis

301

Amino Acids

32.24

Weight (kDa)

5.34

Isoelectric Point (pI)

49.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001397)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15790 AT3G15790 AT3G15790
fragaria_vesca	FvH4_1g03020 FvH4_1g03020 FvH4_1g03020 FvH4_1g03020 FvH4_6g29820 FvH4_6g29820 FvH4_6g29820 FvH4_6g29820 FvH4_6g29820 FvH4_6g29820
malus_domestica	MD00G1123000.v1.1 MD02G1029600.v1.1 MD15G1171000.v1.1 MD17G1210700.v1.1
prunus_persica	Prupe.3G086000_v2.0.a1 Prupe.7G245300_v2.0.a1
pyrus_communis	pycom02g02450 pycom09g14100 pycom15g15250 pycom17g21570
rosa_chinensis	RchiOBHm_Chr2g0088151 RchiOBHm_Chr2g0135641
rosa_laevigata	RLG00000015926 RLG00000019474
rosa_multiflora	Rmu_co8260895.1_g000001 Rmu_sc0002398.1_g000036 Rmu_sc0003275.1_g000050
rosa_roxburghii	Rroxscaffold_2G00109020 Rroxscaffold_2G00152920 Rroxscaffold_6G00395860 Rroxscaffold_7G00180210
rosa_rugosa	Rorug01G0481300 Rorug02G0325200
rosa_samantha	Rh2AG036300 Rh2AG376800 Rh2BG035500 Rh2BG076400 Rh2BG383100 Rh2CG036700 Rh2CG078600 Rh2CG362500 Rh2DG036000 Rh2DG399200 Rh5DG523600
rosa_wichuraiana	Rw1G013660 Rw2G002860 Rw2G030730 Rw4G021240 Rw4G021900 Rw7G017350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	474
AciI	CCGC	6 cut(s)	269, 310, 350, 611, 807, 881
AclWI	GGATC	1 cut(s)	729
AcsI	RAATTY	1 cut(s)	278
AcuI	CTGAAG	2 cut(s)	456, 585
AfaI	GTAC	2 cut(s)	242, 597
AfiI	CCNNNNNNNGG	4 cut(s)	49, 225, 440, 541
AgsI	TTSAA	4 cut(s)	581, 627, 656, 895
AjiI	CACGTC	1 cut(s)	523
AjnI	CCWGG	1 cut(s)	152
AleI	CACNNNNGTG	1 cut(s)	258
AluBI	AGCT	5 cut(s)	69, 122, 428, 485, 557
AluI	AGCT	5 cut(s)	69, 122, 428, 485, 557
Alw21I	GWGCWC	1 cut(s)	71
Alw26I	GTCTC	4 cut(s)	12, 293, 443, 797
AlwI	GGATC	1 cut(s)	729
AlwNI	CAGNNNCTG	2 cut(s)	244, 503
AoxI	GGCC	2 cut(s)	40, 333
ApeKI	GCWGC	2 cut(s)	428, 608
ApoI	RAATTY	1 cut(s)	278
AspS9I	GGNCC	2 cut(s)	40, 263
AsuC2I	CCSGG	4 cut(s)	258, 600, 618, 735
AsuHPI	GGTGA	4 cut(s)	148, 208, 308, 455
AvaII	GGWCC	1 cut(s)	263
BaeGI	GKGCMC	1 cut(s)	293
BanII	GRGCYC	2 cut(s)	71, 369
BarI	GAAGNNNNNNTAC	2 cut(s)	579, 611
Bbv12I	GWGCWC	1 cut(s)	71
BbvI	GCAGC	2 cut(s)	415, 595
BccI	CCATC	2 cut(s)	502, 635
BciT130I	CCWGG	1 cut(s)	154
BcnI	CCSGG	4 cut(s)	258, 600, 618, 735
BcoDI	GTCTC	4 cut(s)	12, 293, 443, 797
BfuAI	ACCTGC	1 cut(s)	474
BisI	GCNGC	4 cut(s)	270, 429, 609, 612
BlsI	GCNGC	4 cut(s)	271, 430, 610, 613
Bme1390I	CCNGG	5 cut(s)	154, 258, 600, 618, 735
Bme18I	GGWCC	1 cut(s)	263
BmgBI	CACGTC	1 cut(s)	523
BmgT120I	GGNCC	2 cut(s)	40, 263
BmiI	GGNNCC	1 cut(s)	615
BmrFI	CCNGG	5 cut(s)	154, 258, 600, 618, 735
BmrI	ACTGGG	1 cut(s)	295
BmsI	GCATC	4 cut(s)	281, 463, 484, 641
BmuI	ACTGGG	1 cut(s)	295
BpuEI	CTTGAG	1 cut(s)	29
BpuMI	CCSGG	4 cut(s)	258, 600, 618, 735
BsaI	GGTCTC	1 cut(s)	797
BsaJI	CCNNGG	4 cut(s)	108, 152, 256, 305
BsaXI	ACNNNNNCTCC	2 cut(s)	89, 119
Bsc4I	CCNNNNNNNGG	4 cut(s)	49, 225, 440, 541
Bse1I	ACTGG	2 cut(s)	290, 298
Bse3DI	GCAATG	1 cut(s)	738
BseBI	CCWGG	1 cut(s)	154
BseDI	CCNNGG	4 cut(s)	108, 152, 256, 305
BseGI	GGATG	1 cut(s)	499
BseLI	CCNNNNNNNGG	4 cut(s)	49, 225, 440, 541
BseMI	GCAATG	1 cut(s)	738
BseMII	CTCAG	3 cut(s)	84, 477, 495
BseNI	ACTGG	2 cut(s)	290, 298
BseRI	GAGGAG	3 cut(s)	110, 461, 549
BseSI	GKGCMC	1 cut(s)	293
BseXI	GCAGC	2 cut(s)	415, 595
BshFI	GGCC	2 cut(s)	42, 335
BsiHKAI	GWGCWC	1 cut(s)	71
BsiSI	CCGG	4 cut(s)	258, 600, 617, 735
BslI	CCNNNNNNNGG	4 cut(s)	49, 225, 440, 541
BsmAI	GTCTC	4 cut(s)	12, 293, 443, 797
BsnI	GGCC	2 cut(s)	42, 335
Bso31I	GGTCTC	1 cut(s)	797
Bsp1286I	GDGCHC	3 cut(s)	71, 293, 369
Bsp143I	GATC	3 cut(s)	183, 213, 721
BspACI	CCGC	6 cut(s)	269, 310, 350, 611, 807, 881
BspANI	GGCC	2 cut(s)	42, 335
BspCNI	CTCAG	3 cut(s)	83, 478, 496
BspHI	TCATGA	1 cut(s)	874
BspLI	GGNNCC	1 cut(s)	615
BspMI	ACCTGC	1 cut(s)	474
BspPI	GGATC	1 cut(s)	729
BspTNI	GGTCTC	1 cut(s)	797
BsrDI	GCAATG	1 cut(s)	738
BsrI	ACTGG	2 cut(s)	290, 298
BssECI	CCNNGG	4 cut(s)	108, 152, 256, 305
BssMI	GATC	3 cut(s)	183, 213, 721
BssT1I	CCWWGG	2 cut(s)	108, 305
Bst2UI	CCWGG	1 cut(s)	154
Bst4CI	ACNGT	3 cut(s)	240, 676, 835
Bst6I	CTCTTC	1 cut(s)	204
BstC8I	GCNNGC	1 cut(s)	67
BstDEI	CTNAG	4 cut(s)	70, 171, 486, 504
BstENI	CCTNNNNNAGG	1 cut(s)	438
BstF5I	GGATG	1 cut(s)	499
BstKTI	GATC	3 cut(s)	186, 216, 724
BstMAI	GTCTC	4 cut(s)	12, 293, 443, 797
BstMBI	GATC	3 cut(s)	183, 213, 721
BstMWI	GCNNNNNNNGC	2 cut(s)	482, 735
BstNI	CCWGG	1 cut(s)	154
BstSCI	CCNGG	5 cut(s)	152, 256, 598, 616, 733
BstSLI	GKGCMC	1 cut(s)	293
BstV1I	GCAGC	2 cut(s)	415, 595
BstXI	CCANNNNNNTGG	1 cut(s)	37
BsuRI	GGCC	2 cut(s)	42, 335
BtrI	CACGTC	1 cut(s)	523
BtsCI	GGATG	1 cut(s)	499
BtsIMutI	CAGTG	3 cut(s)	78, 291, 840
BveI	ACCTGC	1 cut(s)	474
Cac8I	GCNNGC	1 cut(s)	67
CaiI	CAGNNNCTG	2 cut(s)	244, 503
CciI	TCATGA	1 cut(s)	874
Cfr13I	GGNCC	2 cut(s)	40, 263
Csp6I	GTAC	2 cut(s)	241, 596
CviAII	CATG	4 cut(s)	31, 764, 794, 875
CviQI	GTAC	2 cut(s)	241, 596
DdeI	CTNAG	4 cut(s)	70, 171, 486, 504
DpnI	GATC	3 cut(s)	185, 215, 723
DpnII	GATC	3 cut(s)	183, 213, 721
Eam1104I	CTCTTC	1 cut(s)	204
EarI	CTCTTC	1 cut(s)	204
Ecl136II	GAGCTC	1 cut(s)	69
Eco130I	CCWWGG	2 cut(s)	108, 305
Eco24I	GRGCYC	2 cut(s)	71, 369
Eco31I	GGTCTC	1 cut(s)	797
Eco47I	GGWCC	1 cut(s)	263
Eco53kI	GAGCTC	1 cut(s)	69
Eco57I	CTGAAG	2 cut(s)	456, 585
EcoICRI	GAGCTC	1 cut(s)	69
EcoNI	CCTNNNNNAGG	1 cut(s)	438
EcoRII	CCWGG	1 cut(s)	152
EcoT14I	CCWWGG	2 cut(s)	108, 305
EcoT38I	GRGCYC	2 cut(s)	71, 369
ErhI	CCWWGG	2 cut(s)	108, 305
FaeI	CATG	4 cut(s)	34, 767, 797, 878
FaiI	YATR	8 cut(s)	15, 32, 606, 765, 795, 821, 858, 876
FatI	CATG	4 cut(s)	30, 763, 793, 874
FauI	CCCGC	1 cut(s)	874
Fnu4HI	GCNGC	4 cut(s)	270, 429, 609, 612
FokI	GGATG	1 cut(s)	506
FriOI	GRGCYC	2 cut(s)	71, 369
Fsp4HI	GCNGC	4 cut(s)	270, 429, 609, 612
GluI	GCNGC	4 cut(s)	270, 429, 609, 612
HaeIII	GGCC	2 cut(s)	42, 335
HapII	CCGG	4 cut(s)	258, 600, 617, 735
Hin1II	CATG	4 cut(s)	34, 767, 797, 878
HincII	GTYRAC	1 cut(s)	520
HindII	GTYRAC	1 cut(s)	520
HinfI	GANTC	2 cut(s)	5, 623
HpaII	CCGG	4 cut(s)	258, 600, 617, 735
HphI	GGTGA	4 cut(s)	148, 208, 308, 455
Hpy166II	GTNNAC	1 cut(s)	520
Hpy188I	TCNGA	1 cut(s)	277
Hpy188III	TCNNGA	3 cut(s)	434, 563, 875
Hpy8I	GTNNAC	1 cut(s)	520
HpyCH4III	ACNGT	3 cut(s)	240, 676, 835
HpyCH4IV	ACGT	1 cut(s)	522
HpyCH4V	TGCA	3 cut(s)	20, 469, 497
HpyF10VI	GCNNNNNNNGC	2 cut(s)	482, 735
HpyF3I	CTNAG	4 cut(s)	70, 171, 486, 504
HpySE526I	ACGT	1 cut(s)	522
Hsp92II	CATG	4 cut(s)	34, 767, 797, 878
Kzo9I	GATC	3 cut(s)	183, 213, 721
LmnI	GCTCC	4 cut(s)	127, 436, 562, 619
Lsp1109I	GCAGC	2 cut(s)	415, 595
LweI	GCATC	4 cut(s)	281, 463, 484, 641
MaeII	ACGT	1 cut(s)	522
MaeIII	GTNAC	2 cut(s)	461, 829
MalI	GATC	3 cut(s)	185, 215, 723
MboI	GATC	3 cut(s)	183, 213, 721
MboII	GAAGA	5 cut(s)	151, 221, 578, 680, 897
MhlI	GDGCHC	3 cut(s)	71, 293, 369
MluCI	AATT	4 cut(s)	21, 35, 278, 456
MlyI	GAGTC	1 cut(s)	14
MmeI	TCCRAC	1 cut(s)	213
MseI	TTAA	2 cut(s)	24, 591
MslI	CAYNNNNRTG	1 cut(s)	258
MspI	CCGG	4 cut(s)	258, 600, 617, 735
MspR9I	CCNGG	5 cut(s)	154, 258, 600, 618, 735
MvaI	CCWGG	1 cut(s)	154
MwoI	GCNNNNNNNGC	2 cut(s)	482, 735
NciI	CCSGG	4 cut(s)	258, 600, 618, 735
NdeII	GATC	3 cut(s)	183, 213, 721
NlaIII	CATG	4 cut(s)	34, 767, 797, 878
NlaIV	GGNNCC	1 cut(s)	615
NmuCI	GTSAC	1 cut(s)	461
OliI	CACNNNNGTG	1 cut(s)	258
PagI	TCATGA	1 cut(s)	874
PfeI	GAWTC	1 cut(s)	623
PfoI	TCCNGGA	1 cut(s)	616
PkrI	GCNGC	4 cut(s)	271, 430, 610, 613
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
Psp124BI	GAGCTC	1 cut(s)	71
Psp6I	CCWGG	1 cut(s)	152
PspGI	CCWGG	1 cut(s)	152
PspN4I	GGNNCC	1 cut(s)	615
PspPI	GGNCC	2 cut(s)	40, 263
PstNI	CAGNNNCTG	2 cut(s)	244, 503
RsaI	GTAC	2 cut(s)	242, 597
RsaNI	GTAC	2 cut(s)	241, 596
RseI	CAYNNNNRTG	1 cut(s)	258
SacI	GAGCTC	1 cut(s)	71
SaqAI	TTAA	2 cut(s)	24, 591
SatI	GCNGC	4 cut(s)	270, 429, 609, 612
Sau3AI	GATC	3 cut(s)	183, 213, 721
Sau96I	GGNCC	2 cut(s)	40, 263
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	5 cut(s)	154, 258, 600, 618, 735
SduI	GDGCHC	3 cut(s)	71, 293, 369
SfaNI	GCATC	4 cut(s)	281, 463, 484, 641
SinI	GGWCC	1 cut(s)	263
SmiMI	CAYNNNNRTG	1 cut(s)	258
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
Sse9I	AATT	4 cut(s)	21, 35, 278, 456
SsiI	CCGC	6 cut(s)	269, 310, 350, 611, 807, 881
SstI	GAGCTC	1 cut(s)	71
StyD4I	CCNGG	5 cut(s)	152, 256, 598, 616, 733
StyI	CCWWGG	2 cut(s)	108, 305
TaaI	ACNGT	3 cut(s)	240, 676, 835
TaiI	ACGT	1 cut(s)	525
TasI	AATT	4 cut(s)	21, 35, 278, 456
TauI	GCSGC	2 cut(s)	272, 614
TfiI	GAWTC	1 cut(s)	623
Tru1I	TTAA	2 cut(s)	24, 591
Tru9I	TTAA	2 cut(s)	24, 591
TscAI	CASTG	3 cut(s)	78, 298, 840
TseFI	GTSAC	1 cut(s)	461
TseI	GCWGC	2 cut(s)	428, 608
Tsp45I	GTSAC	1 cut(s)	461
TspDTI	ATGAA	4 cut(s)	47, 780, 863, 891
TspRI	CASTG	3 cut(s)	78, 298, 840
VpaK11BI	GGWCC	1 cut(s)	263
XagI	CCTNNNNNAGG	1 cut(s)	438
XapI	RAATTY	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.