Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8260895.1

Orthogroup ID

OG0001397

Physical Location & Seq

Genomic Coordinates Reverse (-)

352 .. 808

Gene Structure 457 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8260895.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 457 bp

gatggaaaaggctgatgtgaaggaaaaccaagatgaggataaagtacaagatgcagataccaaggcagaagtagctcctcccgaagaagctaaagttgatgtaggaaccaatgatgggaaggaagttgagggttctggctctggagaacaaaatgaaaagaaaggtttggaaggaggaaaagtagaagaaaaggtcgggcaaccaccgtctgaggcgcaggaaaaggaagtgactggggatcagggcaaagcagacatagctaccgcacatgaggacaaacatgaaggagaaggagaggaaaaagaaaaacataatgaaagtgaaactaaggagaaagaagcagcacaagggaaggatgaggaacataagagctcaggtgttcatgagttaggcaagaagattgaagcagcagtgactgacaattgcagcaacggcaatgaggctgcgaaggtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008327 GO:0036094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044444 GO:0044464 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBD

Protein Analysis

151

Amino Acids

16.12

Weight (kDa)

4.57

Isoelectric Point (pI)

24.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001397)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15790 AT3G15790 AT3G15790
fragaria_vesca	FvH4_1g03020 FvH4_1g03020 FvH4_1g03020 FvH4_1g03020 FvH4_6g29820 FvH4_6g29820 FvH4_6g29820 FvH4_6g29820 FvH4_6g29820 FvH4_6g29820
malus_domestica	MD00G1123000.v1.1 MD02G1029600.v1.1 MD15G1171000.v1.1 MD17G1210700.v1.1
prunus_persica	Prupe.3G086000_v2.0.a1 Prupe.7G245300_v2.0.a1
pyrus_communis	pycom02g02450 pycom09g14100 pycom15g15250 pycom17g21570
rosa_chinensis	RchiOBHm_Chr2g0088151 RchiOBHm_Chr2g0135641
rosa_laevigata	RLG00000015926 RLG00000019474
rosa_multiflora	Rmu_co8260895.1_g000001 Rmu_sc0002398.1_g000036 Rmu_sc0003275.1_g000050
rosa_roxburghii	Rroxscaffold_2G00109020 Rroxscaffold_2G00152920 Rroxscaffold_6G00395860 Rroxscaffold_7G00180210
rosa_rugosa	Rorug01G0481300 Rorug02G0325200
rosa_samantha	Rh2AG036300 Rh2AG376800 Rh2BG035500 Rh2BG076400 Rh2BG383100 Rh2CG036700 Rh2CG078600 Rh2CG362500 Rh2DG036000 Rh2DG399200 Rh5DG523600
rosa_wichuraiana	Rw1G013660 Rw2G002860 Rw2G030730 Rw4G021240 Rw4G021900 Rw7G017350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	265
AclWI	GGATC	1 cut(s)	247
AfaI	GTAC	1 cut(s)	46
AfiI	CCNNNNNNNGG	2 cut(s)	35, 115
AgsI	TTSAA	1 cut(s)	405
AluBI	AGCT	4 cut(s)	75, 90, 261, 373
AluI	AGCT	4 cut(s)	75, 90, 261, 373
Alw21I	GWGCWC	1 cut(s)	375
AlwI	GGATC	1 cut(s)	247
AlwNI	CAGNNNCTG	1 cut(s)	417
ApeKI	GCWGC	4 cut(s)	342, 408, 427, 444
AspLEI	GCGC	1 cut(s)	218
BanII	GRGCYC	1 cut(s)	375
Bbv12I	GWGCWC	1 cut(s)	375
BbvI	GCAGC	4 cut(s)	354, 420, 431, 439
BccI	CCATC	1 cut(s)	108
BceAI	ACGGC	1 cut(s)	449
BisI	GCNGC	4 cut(s)	343, 409, 428, 445
BlsI	GCNGC	4 cut(s)	344, 410, 429, 446
BmiI	GGNNCC	1 cut(s)	107
BmrI	ACTGGG	1 cut(s)	244
BmsI	GCATC	1 cut(s)	41
BmuI	ACTGGG	1 cut(s)	244
BpmI	CTGGAG	1 cut(s)	163
Bpu10I	CCTNAGC	1 cut(s)	374
BsaJI	CCNNGG	1 cut(s)	61
BsaXI	ACNNNNNCTCC	2 cut(s)	166, 196
Bsc4I	CCNNNNNNNGG	2 cut(s)	35, 115
Bse1I	ACTGG	1 cut(s)	239
Bse3DI	GCAATG	1 cut(s)	443
BseDI	CCNNGG	1 cut(s)	61
BseGI	GGATG	1 cut(s)	362
BseLI	CCNNNNNNNGG	2 cut(s)	35, 115
BseMI	GCAATG	1 cut(s)	443
BseMII	CTCAG	2 cut(s)	202, 388
BseNI	ACTGG	1 cut(s)	239
BseRI	GAGGAG	1 cut(s)	67
BseXI	GCAGC	4 cut(s)	354, 420, 431, 439
BsiHKAI	GWGCWC	1 cut(s)	375
BslI	CCNNNNNNNGG	2 cut(s)	35, 115
Bsp1286I	GDGCHC	1 cut(s)	375
Bsp143I	GATC	1 cut(s)	239
BspACI	CCGC	1 cut(s)	265
BspCNI	CTCAG	2 cut(s)	203, 387
BspHI	TCATGA	1 cut(s)	383
BspLI	GGNNCC	1 cut(s)	107
BspPI	GGATC	1 cut(s)	247
BsrDI	GCAATG	1 cut(s)	443
BsrI	ACTGG	1 cut(s)	239
BssECI	CCNNGG	1 cut(s)	61
BssMI	GATC	1 cut(s)	239
BssT1I	CCWWGG	1 cut(s)	61
Bst4CI	ACNGT	1 cut(s)	208
BstDEI	CTNAG	3 cut(s)	211, 328, 374
BstF5I	GGATG	1 cut(s)	362
BstHHI	GCGC	1 cut(s)	218
BstKTI	GATC	1 cut(s)	242
BstMBI	GATC	1 cut(s)	239
BstMWI	GCNNNNNNNGC	3 cut(s)	72, 258, 433
BstV1I	GCAGC	4 cut(s)	354, 420, 431, 439
BtsCI	GGATG	1 cut(s)	362
BtsI	GCAGTG	1 cut(s)	418
BtsIMutI	CAGTG	1 cut(s)	418
CaiI	CAGNNNCTG	1 cut(s)	417
CciI	TCATGA	1 cut(s)	383
CfoI	GCGC	1 cut(s)	218
Csp6I	GTAC	1 cut(s)	45
CviAII	CATG	3 cut(s)	270, 282, 384
CviJI	RGCY	7 cut(s)	12, 75, 90, 139, 261, 373, 444
CviKI_1	RGCY	7 cut(s)	12, 75, 90, 139, 261, 373, 444
CviQI	GTAC	1 cut(s)	45
DdeI	CTNAG	3 cut(s)	211, 328, 374
DpnI	GATC	1 cut(s)	241
DpnII	GATC	1 cut(s)	239
Ecl136II	GAGCTC	1 cut(s)	373
Eco130I	CCWWGG	1 cut(s)	61
Eco24I	GRGCYC	1 cut(s)	375
Eco53kI	GAGCTC	1 cut(s)	373
EcoICRI	GAGCTC	1 cut(s)	373
EcoT14I	CCWWGG	1 cut(s)	61
EcoT38I	GRGCYC	1 cut(s)	375
ErhI	CCWWGG	1 cut(s)	61
FaeI	CATG	3 cut(s)	273, 285, 387
FaiI	YATR	6 cut(s)	258, 271, 283, 313, 367, 385
FatI	CATG	3 cut(s)	269, 281, 383
Fnu4HI	GCNGC	4 cut(s)	343, 409, 428, 445
FokI	GGATG	1 cut(s)	369
FriOI	GRGCYC	1 cut(s)	375
Fsp4HI	GCNGC	4 cut(s)	343, 409, 428, 445
GlaI	GCGC	1 cut(s)	217
GluI	GCNGC	4 cut(s)	343, 409, 428, 445
GsuI	CTGGAG	1 cut(s)	163
HhaI	GCGC	1 cut(s)	218
Hin1II	CATG	3 cut(s)	273, 285, 387
Hin6I	GCGC	1 cut(s)	216
HinP1I	GCGC	1 cut(s)	216
Hpy188I	TCNGA	1 cut(s)	212
Hpy188III	TCNNGA	3 cut(s)	81, 142, 384
HpyAV	CCTTC	7 cut(s)	14, 113, 165, 279, 285, 347, 443
HpyCH4III	ACNGT	1 cut(s)	208
HpyCH4V	TGCA	2 cut(s)	54, 427
HpyF10VI	GCNNNNNNNGC	3 cut(s)	72, 258, 433
HpyF3I	CTNAG	3 cut(s)	211, 328, 374
Hsp92II	CATG	3 cut(s)	273, 285, 387
HspAI	GCGC	1 cut(s)	216
Kzo9I	GATC	1 cut(s)	239
LmnI	GCTCC	1 cut(s)	80
LpnPI	CCDG	6 cut(s)	121, 127, 204, 220, 228, 361
Lsp1109I	GCAGC	4 cut(s)	354, 420, 431, 439
LweI	GCATC	1 cut(s)	41
MaeIII	GTNAC	2 cut(s)	230, 413
MalI	GATC	1 cut(s)	241
MboI	GATC	1 cut(s)	239
MboII	GAAGA	3 cut(s)	96, 198, 410
MfeI	CAATTG	1 cut(s)	422
MhlI	GDGCHC	1 cut(s)	375
MluCI	AATT	1 cut(s)	422
MnlI	CCTC	9 cut(s)	29, 88, 122, 168, 206, 266, 290, 353, 434
MunI	CAATTG	1 cut(s)	422
MwoI	GCNNNNNNNGC	3 cut(s)	72, 258, 433
NdeII	GATC	1 cut(s)	239
NlaIII	CATG	3 cut(s)	273, 285, 387
NlaIV	GGNNCC	1 cut(s)	107
NmuCI	GTSAC	2 cut(s)	230, 413
PagI	TCATGA	1 cut(s)	383
PkrI	GCNGC	4 cut(s)	344, 410, 429, 446
Psp124BI	GAGCTC	1 cut(s)	375
PspN4I	GGNNCC	1 cut(s)	107
PstNI	CAGNNNCTG	1 cut(s)	417
RsaI	GTAC	1 cut(s)	46
RsaNI	GTAC	1 cut(s)	45
SacI	GAGCTC	1 cut(s)	375
SatI	GCNGC	4 cut(s)	343, 409, 428, 445
Sau3AI	GATC	1 cut(s)	239
SduI	GDGCHC	1 cut(s)	375
SetI	ASST	8 cut(s)	77, 92, 167, 196, 263, 375, 380, 454
SfaNI	GCATC	1 cut(s)	41
Sse9I	AATT	1 cut(s)	422
SsiI	CCGC	1 cut(s)	265
SstI	GAGCTC	1 cut(s)	375
StyI	CCWWGG	1 cut(s)	61
TaaI	ACNGT	1 cut(s)	208
TasI	AATT	1 cut(s)	422
TatI	WGTACW	1 cut(s)	44
TscAI	CASTG	1 cut(s)	418
TseFI	GTSAC	2 cut(s)	230, 413
TseI	GCWGC	4 cut(s)	342, 408, 427, 444
Tsp45I	GTSAC	2 cut(s)	230, 413
TspDTI	ATGAA	4 cut(s)	169, 298, 331, 372
TspRI	CASTG	1 cut(s)	418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.