Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0001397

Physical Location & Seq

Genomic Coordinates Forward (+)

6378424 .. 6383751

Gene Structure 5328 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G086000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGATAGCAAAGTGGATGAGGTTTCTGTAGAGCTCTCAGCTCCTCCTGCTTGGAAGAAGAAGTTTTTCCCCAAGAAGGGAGGTACACCAAGGAAAAATGAGATCGTATTCATTTCTCCAACAGGGGAGGAGATTAATAATAGAAAACAATTGGAGCAGTACTTAAAATCACACCCTGGTAACCCTGCAATATCAGAGTTTGATTGGAGCACTGGTGAAACCCCTAGGAGATCAGCAAGGATCAGTGAAAAGGTCAAGGTGGCTCCAGCACCAGAGAGTGAGCCTCCCAAAAAAAGAGGCCGAAAATCATCAGGTTCAAAGGACAACAAAATGGAAGCTGCTGGTGGAGAAGTTGATGGTACGAATGAAATTCAAATGAAAGATGCAGAGGTAGCTGAGAAGAGAGATGCAGAAGCTGAGAAAGAGAAAGATGCGGAAGCAGAGAAAGAAAAAGATGCAGACGTTGAGAATGATGATAAGAAAACTCAAGGCGAGGAGGAAAATGAAGAGAAAAATGTTGTAACAGAGGATAAAGCTGCTACTGAGATAACTGAAAACAACAAAGAAGAGGTGCCACAAGCAGGGGAAGATCAAGCGAATGGAACTTGCGGCAAAAAACAGGATGAAACAGCTGCTGTGACTGTGGAAGAAAATGGGGCTGCGGAGAAAGAGAATGTGGATGCAGCAGCACCTCATACGGAGGGAGAGATCAAAGGGAATAACGATGCAGCAGAGAACGGTGGAAAATGCAATGCTGAAGCTGACGAGAAAATCAAGACCAAGGATGGGGAGGTTGTTGAAAATGGCAAGGCTGAGCAAGTGGTGCAAGCTGATGCCCCACAAAATCTACAGACCCCTCCATTGAGCCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008327 GO:0036094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044444 GO:0044464 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBD

Protein Analysis

291

Amino Acids

31.5

Weight (kDa)

4.72

Isoelectric Point (pI)

40.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001397)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15790 AT3G15790 AT3G15790
fragaria_vesca	FvH4_1g03020 FvH4_1g03020 FvH4_1g03020 FvH4_1g03020 FvH4_6g29820 FvH4_6g29820 FvH4_6g29820 FvH4_6g29820 FvH4_6g29820 FvH4_6g29820
malus_domestica	MD00G1123000.v1.1 MD02G1029600.v1.1 MD15G1171000.v1.1 MD17G1210700.v1.1
prunus_persica	Prupe.3G086000_v2.0.a1 Prupe.7G245300_v2.0.a1
pyrus_communis	pycom02g02450 pycom09g14100 pycom15g15250 pycom17g21570
rosa_chinensis	RchiOBHm_Chr2g0088151 RchiOBHm_Chr2g0135641
rosa_laevigata	RLG00000015926 RLG00000019474
rosa_multiflora	Rmu_co8260895.1_g000001 Rmu_sc0002398.1_g000036 Rmu_sc0003275.1_g000050
rosa_roxburghii	Rroxscaffold_2G00109020 Rroxscaffold_2G00152920 Rroxscaffold_6G00395860 Rroxscaffold_7G00180210
rosa_rugosa	Rorug01G0481300 Rorug02G0325200
rosa_samantha	Rh2AG036300 Rh2AG376800 Rh2BG035500 Rh2BG076400 Rh2BG383100 Rh2CG036700 Rh2CG078600 Rh2CG362500 Rh2DG036000 Rh2DG399200 Rh5DG523600
rosa_wichuraiana	Rw1G013660 Rw2G002860 Rw2G030730 Rw4G021240 Rw4G021900 Rw7G017350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	571
AciI	CCGC	4 cut(s)	434, 609, 662, 868
AclWI	GGATC	1 cut(s)	248
AcsI	RAATTY	1 cut(s)	369
AcuI	CTGAAG	1 cut(s)	777
AfaI	GTAC	3 cut(s)	85, 161, 361
AfiI	CCNNNNNNNGG	4 cut(s)	76, 77, 581, 786
AgsI	TTSAA	3 cut(s)	318, 374, 800
AjnI	CCWGG	1 cut(s)	175
AluBI	AGCT	9 cut(s)	34, 41, 338, 395, 416, 536, 632, 761, 830
AluI	AGCT	9 cut(s)	34, 41, 338, 395, 416, 536, 632, 761, 830
Alw21I	GWGCWC	2 cut(s)	36, 212
AlwI	GGATC	1 cut(s)	248
AlwNI	CAGNNNCTG	2 cut(s)	416, 635
AoxI	GGCC	1 cut(s)	298
ApeKI	GCWGC	7 cut(s)	338, 536, 632, 659, 683, 686, 728
ApoI	RAATTY	1 cut(s)	369
AseI	ATTAAT	1 cut(s)	135
Asp700I	GAANNNNTTC	1 cut(s)	65
AspA2I	CCTAGG	1 cut(s)	224
AsuHPI	GGTGA	1 cut(s)	227
AvrII	CCTAGG	1 cut(s)	224
BanI	GGYRCC	1 cut(s)	571
BanII	GRGCYC	1 cut(s)	36
Bbv12I	GWGCWC	2 cut(s)	36, 212
BbvI	GCAGC	7 cut(s)	325, 523, 619, 646, 695, 698, 740
BccI	CCATC	2 cut(s)	350, 779
BciT130I	CCWGG	1 cut(s)	177
BfaI	CTAG	1 cut(s)	225
BfmI	CTRYAG	2 cut(s)	27, 848
BisI	GCNGC	9 cut(s)	339, 537, 610, 633, 660, 684, 687, 729, 868
BlnI	CCTAGG	1 cut(s)	224
BlpI	GCTNAGC	1 cut(s)	813
BlsI	GCNGC	9 cut(s)	340, 538, 611, 634, 661, 685, 688, 730, 869
BmcAI	AGTACT	1 cut(s)	161
Bme1390I	CCNGG	1 cut(s)	177
BmiI	GGNNCC	2 cut(s)	264, 573
BmrFI	CCNGG	1 cut(s)	177
BmsI	GCATC	7 cut(s)	373, 397, 421, 445, 670, 715, 823
BplI	GAGNNNNNCTC	2 cut(s)	268, 300
BpmI	CTGGAG	1 cut(s)	249
Bpu1102I	GCTNAGC	1 cut(s)	813
BpuEI	CTTGAG	1 cut(s)	471
BsaJI	CCNNGG	4 cut(s)	89, 175, 224, 780
BsaXI	ACNNNNNCTCC	2 cut(s)	199, 229
Bsc4I	CCNNNNNNNGG	4 cut(s)	76, 77, 581, 786
Bse1I	ACTGG	1 cut(s)	217
Bse3DI	GCAATG	1 cut(s)	757
BseBI	CCWGG	1 cut(s)	177
BseDI	CCNNGG	4 cut(s)	89, 175, 224, 780
BseGI	GGATG	4 cut(s)	22, 628, 685, 790
BseLI	CCNNNNNNNGG	4 cut(s)	76, 77, 581, 786
BseMI	GCAATG	1 cut(s)	757
BseMII	CTCAG	5 cut(s)	51, 387, 408, 534, 804
BseNI	ACTGG	1 cut(s)	217
BseRI	GAGGAG	3 cut(s)	33, 143, 509
BseXI	GCAGC	7 cut(s)	325, 523, 619, 646, 695, 698, 740
BshFI	GGCC	1 cut(s)	300
BshNI	GGYRCC	1 cut(s)	571
BsiHKAI	GWGCWC	2 cut(s)	36, 212
BslI	CCNNNNNNNGG	4 cut(s)	76, 77, 581, 786
BsnI	GGCC	1 cut(s)	300
Bsp1286I	GDGCHC	2 cut(s)	36, 212
Bsp143I	GATC	5 cut(s)	102, 230, 240, 589, 708
Bsp1720I	GCTNAGC	1 cut(s)	813
BspACI	CCGC	4 cut(s)	434, 609, 662, 868
BspANI	GGCC	1 cut(s)	300
BspCNI	CTCAG	5 cut(s)	50, 388, 409, 535, 805
BspLI	GGNNCC	2 cut(s)	264, 573
BspPI	GGATC	1 cut(s)	248
BspT107I	GGYRCC	1 cut(s)	571
BsrDI	GCAATG	1 cut(s)	757
BsrI	ACTGG	1 cut(s)	217
BssECI	CCNNGG	4 cut(s)	89, 175, 224, 780
BssMI	GATC	5 cut(s)	102, 230, 240, 589, 708
BssT1I	CCWWGG	3 cut(s)	89, 224, 780
Bst2UI	CCWGG	1 cut(s)	177
Bst4CI	ACNGT	2 cut(s)	643, 740
Bst6I	CTCTTC	3 cut(s)	395, 501, 561
BstAPI	GCANNNNNTGC	1 cut(s)	823
BstC8I	GCNNGC	1 cut(s)	828
BstDEI	CTNAG	5 cut(s)	37, 396, 417, 543, 813
BstEII	GGTNACC	1 cut(s)	179
BstF5I	GGATG	4 cut(s)	22, 628, 685, 790
BstKTI	GATC	5 cut(s)	105, 233, 243, 592, 711
BstMBI	GATC	5 cut(s)	102, 230, 240, 589, 708
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 392, 823
BstNI	CCWGG	1 cut(s)	177
BstPI	GGTNACC	1 cut(s)	179
BstSCI	CCNGG	1 cut(s)	175
BstSFI	CTRYAG	2 cut(s)	27, 848
BstV1I	GCAGC	7 cut(s)	325, 523, 619, 646, 695, 698, 740
BsuRI	GGCC	1 cut(s)	300
BtsCI	GGATG	4 cut(s)	22, 628, 685, 790
BtsIMutI	CAGTG	2 cut(s)	210, 250
Cac8I	GCNNGC	1 cut(s)	828
CaiI	CAGNNNCTG	2 cut(s)	416, 635
Csp6I	GTAC	3 cut(s)	84, 160, 360
CviQI	GTAC	3 cut(s)	84, 160, 360
DdeI	CTNAG	5 cut(s)	37, 396, 417, 543, 813
DpnI	GATC	5 cut(s)	104, 232, 242, 591, 710
DpnII	GATC	5 cut(s)	102, 230, 240, 589, 708
Eam1104I	CTCTTC	3 cut(s)	395, 501, 561
EarI	CTCTTC	3 cut(s)	395, 501, 561
Ecl136II	GAGCTC	1 cut(s)	34
Eco130I	CCWWGG	3 cut(s)	89, 224, 780
Eco24I	GRGCYC	1 cut(s)	36
Eco53kI	GAGCTC	1 cut(s)	34
Eco57I	CTGAAG	1 cut(s)	777
Eco91I	GGTNACC	1 cut(s)	179
EcoICRI	GAGCTC	1 cut(s)	34
EcoO65I	GGTNACC	1 cut(s)	179
EcoRII	CCWGG	1 cut(s)	175
EcoT14I	CCWWGG	3 cut(s)	89, 224, 780
EcoT38I	GRGCYC	1 cut(s)	36
ErhI	CCWWGG	3 cut(s)	89, 224, 780
FaiI	YATR	1 cut(s)	696
Fnu4HI	GCNGC	9 cut(s)	339, 537, 610, 633, 660, 684, 687, 729, 868
FokI	GGATG	4 cut(s)	29, 635, 692, 797
FriOI	GRGCYC	1 cut(s)	36
Fsp4HI	GCNGC	9 cut(s)	339, 537, 610, 633, 660, 684, 687, 729, 868
FspBI	CTAG	1 cut(s)	225
GluI	GCNGC	9 cut(s)	339, 537, 610, 633, 660, 684, 687, 729, 868
GsuI	CTGGAG	1 cut(s)	249
HaeIII	GGCC	1 cut(s)	300
HphI	GGTGA	1 cut(s)	227
Hpy166II	GTNNAC	1 cut(s)	86
Hpy188I	TCNGA	1 cut(s)	196
Hpy188III	TCNNGA	1 cut(s)	775
Hpy8I	GTNNAC	1 cut(s)	86
HpyAV	CCTTC	1 cut(s)	70
HpyCH4III	ACNGT	2 cut(s)	643, 740
HpyCH4IV	ACGT	1 cut(s)	462
HpyCH4V	TGCA	8 cut(s)	188, 386, 410, 458, 683, 728, 750, 826
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 392, 823
HpyF3I	CTNAG	5 cut(s)	37, 396, 417, 543, 813
HpySE526I	ACGT	1 cut(s)	462
Kzo9I	GATC	5 cut(s)	102, 230, 240, 589, 708
LmnI	GCTCC	4 cut(s)	46, 154, 207, 268
Lsp1109I	GCAGC	7 cut(s)	325, 523, 619, 646, 695, 698, 740
LweI	GCATC	7 cut(s)	373, 397, 421, 445, 670, 715, 823
MaeI	CTAG	1 cut(s)	225
MaeII	ACGT	1 cut(s)	462
MaeIII	GTNAC	3 cut(s)	179, 520, 637
MalI	GATC	5 cut(s)	104, 232, 242, 591, 710
MboI	GATC	5 cut(s)	102, 230, 240, 589, 708
MboII	GAAGA	7 cut(s)	67, 70, 412, 518, 578, 599, 659
MfeI	CAATTG	1 cut(s)	149
MhlI	GDGCHC	2 cut(s)	36, 212
MluCI	AATT	2 cut(s)	149, 369
MmeI	TCCRAC	1 cut(s)	143
MroXI	GAANNNNTTC	1 cut(s)	65
MseI	TTAA	2 cut(s)	135, 164
MspA1I	CMGCKG	2 cut(s)	632, 870
MspR9I	CCNGG	1 cut(s)	177
MunI	CAATTG	1 cut(s)	149
MvaI	CCWGG	1 cut(s)	177
MwoI	GCNNNNNNNGC	3 cut(s)	47, 392, 823
NdeII	GATC	5 cut(s)	102, 230, 240, 589, 708
NlaIV	GGNNCC	2 cut(s)	264, 573
NmuCI	GTSAC	1 cut(s)	637
PdmI	GAANNNNTTC	1 cut(s)	65
PkrI	GCNGC	9 cut(s)	340, 538, 611, 634, 661, 685, 688, 730, 869
PshBI	ATTAAT	1 cut(s)	135
Psp124BI	GAGCTC	1 cut(s)	36
Psp6I	CCWGG	1 cut(s)	175
PspEI	GGTNACC	1 cut(s)	179
PspGI	CCWGG	1 cut(s)	175
PspN4I	GGNNCC	2 cut(s)	264, 573
PstNI	CAGNNNCTG	2 cut(s)	416, 635
PvuII	CAGCTG	1 cut(s)	632
RsaI	GTAC	3 cut(s)	85, 161, 361
RsaNI	GTAC	3 cut(s)	84, 160, 360
SacI	GAGCTC	1 cut(s)	36
SaqAI	TTAA	2 cut(s)	135, 164
SatI	GCNGC	9 cut(s)	339, 537, 610, 633, 660, 684, 687, 729, 868
Sau3AI	GATC	5 cut(s)	102, 230, 240, 589, 708
ScaI	AGTACT	1 cut(s)	161
ScrFI	CCNGG	1 cut(s)	177
SduI	GDGCHC	2 cut(s)	36, 212
SfaNI	GCATC	7 cut(s)	373, 397, 421, 445, 670, 715, 823
SfcI	CTRYAG	2 cut(s)	27, 848
SmlI	CTYRAG	1 cut(s)	486
SmoI	CTYRAG	1 cut(s)	486
Sse9I	AATT	2 cut(s)	149, 369
SsiI	CCGC	4 cut(s)	434, 609, 662, 868
SspMI	CTAG	1 cut(s)	225
SstI	GAGCTC	1 cut(s)	36
StyD4I	CCNGG	1 cut(s)	175
StyI	CCWWGG	3 cut(s)	89, 224, 780
TaaI	ACNGT	2 cut(s)	643, 740
TaiI	ACGT	1 cut(s)	465
TasI	AATT	2 cut(s)	149, 369
TatI	WGTACW	1 cut(s)	159
TauI	GCSGC	2 cut(s)	612, 870
Tru1I	TTAA	2 cut(s)	135, 164
Tru9I	TTAA	2 cut(s)	135, 164
TscAI	CASTG	2 cut(s)	217, 250
TseFI	GTSAC	1 cut(s)	637
TseI	GCWGC	7 cut(s)	338, 536, 632, 659, 683, 686, 728
Tsp45I	GTSAC	1 cut(s)	637
TspDTI	ATGAA	5 cut(s)	100, 381, 392, 519, 639
TspGWI	ACGGA	1 cut(s)	713
TspRI	CASTG	2 cut(s)	217, 250
VspI	ATTAAT	1 cut(s)	135
XapI	RAATTY	1 cut(s)	369
XmaJI	CCTAGG	1 cut(s)	224
XmnI	GAANNNNTTC	1 cut(s)	65
XspI	CTAG	1 cut(s)	225
ZrmI	AGTACT	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.