Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001397

Physical Location & Seq

Genomic Coordinates Forward (+)

5342712 .. 5344715

Gene Structure 2004 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G15790.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGGTGGTGAAGAGGAAGTTGTTTCTGTTGAGCTACCAGCACCTTCTTCATGGAAGAAATTGTTTTACCCCAACAAAGTGGGTTCAGTGAAGAAAACAGAGGTTGTGTTTGTGGCTCCAACGGGTGAGGAGATTAGTAACAGAAAGCAGCTGGAGCAGTATCTCAAATCGCACCCTGGAAACCCCGCGATCGCAGAGTTTGATTGGACGACTAGTGGGACACCTAGGAGATCTGCAAGAATCAGTGAGAAGACTAAGGCTACGCCGTCACCAGATAAAGAGCCACCCAAGAAGCGAGGTAGAACCAAATCTCCAGTGTCAAAGAAAGATGCAGAAGGTGAGAAATCAGAGGGAGGAGGAGAGGAAAACTCTCATGTGAAAGATACTGAAATGAATCCTCCAGAGGGAATCGCCGAGAATGAAAATGTGACCGATAAGAATGGCTCCGGTGAAACTGAGAGGGTGAATGATGCAAAAGAAAACATTGTTGCTGAGGAAACTCCAAATGCGGCTCCAGTTCAAGAAGAGGGTGAGTCGATGAAGGAGAAAGCTCTGGATTCTGTTGATGATAAGAGTAAGGAGACTGACAAAGAAAAAGATACTGGCTCAATCGAAAAGAACTCGGTAGATGTAGAGAAGAAGACCGTTGAAGCTAGTGATGAGAAGAAGAATTCTGAAGCTGAGACCAGAAACCATGAAGAAAATGGTCTGACCACAGAAGCTGAGGGGAAAGAGAAAACAGCAGAAGGAGAAGCTACCGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008327 GO:0036094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044444 GO:0044464 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBD

Protein Analysis

254

Amino Acids

27.64

Weight (kDa)

4.86

Isoelectric Point (pI)

43.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MBD	PF01429	7 - 72	7.4e-16	Methyl-CpG binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001397)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15790 AT3G15790 AT3G15790
fragaria_vesca	FvH4_1g03020 FvH4_1g03020 FvH4_1g03020 FvH4_1g03020 FvH4_6g29820 FvH4_6g29820 FvH4_6g29820 FvH4_6g29820 FvH4_6g29820 FvH4_6g29820
malus_domestica	MD00G1123000.v1.1 MD02G1029600.v1.1 MD15G1171000.v1.1 MD17G1210700.v1.1
prunus_persica	Prupe.3G086000_v2.0.a1 Prupe.7G245300_v2.0.a1
pyrus_communis	pycom02g02450 pycom09g14100 pycom15g15250 pycom17g21570
rosa_chinensis	RchiOBHm_Chr2g0088151 RchiOBHm_Chr2g0135641
rosa_laevigata	RLG00000015926 RLG00000019474
rosa_multiflora	Rmu_co8260895.1_g000001 Rmu_sc0002398.1_g000036 Rmu_sc0003275.1_g000050
rosa_roxburghii	Rroxscaffold_2G00109020 Rroxscaffold_2G00152920 Rroxscaffold_6G00395860 Rroxscaffold_7G00180210
rosa_rugosa	Rorug01G0481300 Rorug02G0325200
rosa_samantha	Rh2AG036300 Rh2AG376800 Rh2BG035500 Rh2BG076400 Rh2BG383100 Rh2CG036700 Rh2CG078600 Rh2CG362500 Rh2DG036000 Rh2DG399200 Rh5DG523600
rosa_wichuraiana	Rw1G013660 Rw2G002860 Rw2G030730 Rw4G021240 Rw4G021900 Rw7G017350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	188
AciI	CCGC	2 cut(s)	186, 509
AcsI	RAATTY	1 cut(s)	670
AcuI	CTGAAG	1 cut(s)	696
AfiI	CCNNNNNNNGG	1 cut(s)	404
AgsI	TTSAA	2 cut(s)	521, 650
AhlI	ACTAGT	1 cut(s)	212
AjnI	CCWGG	1 cut(s)	175
AloI	GAACNNNNNNTCC	2 cut(s)	295, 327
AluBI	AGCT	7 cut(s)	34, 151, 551, 653, 680, 722, 755
AluI	AGCT	7 cut(s)	34, 151, 551, 653, 680, 722, 755
Alw26I	GTCTC	2 cut(s)	575, 677
AlwNI	CAGNNNCTG	1 cut(s)	722
ApeKI	GCWGC	1 cut(s)	148
ApoI	RAATTY	1 cut(s)	670
AsiSI	GCGATCGC	1 cut(s)	192
AspA2I	CCTAGG	1 cut(s)	224
AsuHPI	GGTGA	7 cut(s)	20, 137, 261, 350, 461, 475, 542
AvrII	CCTAGG	1 cut(s)	224
BbsI	GAAGAC	2 cut(s)	257, 647
BbvCI	CCTCAGC	2 cut(s)	492, 723
BbvI	GCAGC	1 cut(s)	160
BceAI	ACGGC	1 cut(s)	250
BciT130I	CCWGG	1 cut(s)	177
BcoDI	GTCTC	2 cut(s)	575, 677
BcuI	ACTAGT	1 cut(s)	212
BfaI	CTAG	3 cut(s)	213, 225, 654
BglII	AGATCT	1 cut(s)	230
BisI	GCNGC	2 cut(s)	149, 510
BlnI	CCTAGG	1 cut(s)	224
BlsI	GCNGC	2 cut(s)	150, 511
Bme1390I	CCNGG	1 cut(s)	177
BmiI	GGNNCC	3 cut(s)	117, 445, 513
BmrFI	CCNGG	1 cut(s)	177
BmsI	GCATC	2 cut(s)	319, 460
BpiI	GAAGAC	2 cut(s)	257, 647
BplI	GAGNNNNNCTC	2 cut(s)	353, 385
BpmI	CTGGAG	4 cut(s)	173, 297, 384, 498
Bpu10I	CCTNAGC	2 cut(s)	492, 723
BsaI	GGTCTC	1 cut(s)	677
BsaJI	CCNNGG	2 cut(s)	175, 224
BsaWI	WCCGGW	2 cut(s)	446, 758
BsaXI	ACNNNNNCTCC	2 cut(s)	295, 325
Bsc4I	CCNNNNNNNGG	1 cut(s)	404
Bse1I	ACTGG	3 cut(s)	314, 515, 607
BseBI	CCWGG	1 cut(s)	177
BseDI	CCNNGG	2 cut(s)	175, 224
BseLI	CCNNNNNNNGG	1 cut(s)	404
BseMII	CTCAG	4 cut(s)	447, 483, 672, 714
BseNI	ACTGG	3 cut(s)	314, 515, 607
BseRI	GAGGAG	3 cut(s)	143, 369, 372
BseXI	GCAGC	1 cut(s)	160
Bsh1236I	CGCG	1 cut(s)	188
Bsh1285I	CGRYCG	1 cut(s)	192
BsiEI	CGRYCG	1 cut(s)	192
BsiSI	CCGG	2 cut(s)	447, 759
BslFI	GGGAC	1 cut(s)	232
BslI	CCNNNNNNNGG	1 cut(s)	404
BsmAI	GTCTC	2 cut(s)	575, 677
BsmFI	GGGAC	1 cut(s)	232
Bso31I	GGTCTC	1 cut(s)	677
Bsp143I	GATC	2 cut(s)	189, 230
BspACI	CCGC	2 cut(s)	186, 509
BspCNI	CTCAG	4 cut(s)	448, 484, 673, 715
BspFNI	CGCG	1 cut(s)	188
BspLI	GGNNCC	3 cut(s)	117, 445, 513
BspTNI	GGTCTC	1 cut(s)	677
BsrI	ACTGG	3 cut(s)	314, 515, 607
BssECI	CCNNGG	2 cut(s)	175, 224
BssMI	GATC	2 cut(s)	189, 230
BssT1I	CCWWGG	1 cut(s)	224
Bst2UI	CCWGG	1 cut(s)	177
Bst4CI	ACNGT	1 cut(s)	646
Bst6I	CTCTTC	2 cut(s)	6, 519
BstDEI	CTNAG	5 cut(s)	255, 456, 492, 681, 723
BstFNI	CGCG	1 cut(s)	188
BstKTI	GATC	2 cut(s)	192, 233
BstMAI	GTCTC	2 cut(s)	575, 677
BstMBI	GATC	2 cut(s)	189, 230
BstMCI	CGRYCG	1 cut(s)	192
BstMWI	GCNNNNNNNGC	1 cut(s)	154
BstNI	CCWGG	1 cut(s)	177
BstSCI	CCNGG	1 cut(s)	175
BstUI	CGCG	1 cut(s)	188
BstV1I	GCAGC	1 cut(s)	160
BstV2I	GAAGAC	2 cut(s)	257, 647
BstX2I	RGATCY	1 cut(s)	230
BstXI	CCANNNNNNTGG	1 cut(s)	79
BstYI	RGATCY	1 cut(s)	230
BtsIMutI	CAGTG	3 cut(s)	93, 250, 321
CaiI	CAGNNNCTG	1 cut(s)	722
CviAII	CATG	3 cut(s)	51, 374, 695
DdeI	CTNAG	5 cut(s)	255, 456, 492, 681, 723
DpnI	GATC	2 cut(s)	191, 232
DpnII	GATC	2 cut(s)	189, 230
Eam1104I	CTCTTC	2 cut(s)	6, 519
EarI	CTCTTC	2 cut(s)	6, 519
Eco130I	CCWWGG	1 cut(s)	224
Eco31I	GGTCTC	1 cut(s)	677
Eco57I	CTGAAG	1 cut(s)	696
EcoRI	GAATTC	1 cut(s)	670
EcoRII	CCWGG	1 cut(s)	175
EcoT14I	CCWWGG	1 cut(s)	224
ErhI	CCWWGG	1 cut(s)	224
FaeI	CATG	3 cut(s)	54, 377, 698
FaiI	YATR	3 cut(s)	52, 375, 696
FaqI	GGGAC	1 cut(s)	232
FatI	CATG	3 cut(s)	50, 373, 694
FauI	CCCGC	1 cut(s)	193
Fnu4HI	GCNGC	2 cut(s)	149, 510
Fsp4HI	GCNGC	2 cut(s)	149, 510
FspBI	CTAG	3 cut(s)	213, 225, 654
GluI	GCNGC	2 cut(s)	149, 510
GsuI	CTGGAG	4 cut(s)	173, 297, 384, 498
HapII	CCGG	2 cut(s)	447, 759
Hin1II	CATG	3 cut(s)	54, 377, 698
HinfI	GANTC	5 cut(s)	240, 394, 408, 533, 557
HpaII	CCGG	2 cut(s)	447, 759
HphI	GGTGA	7 cut(s)	20, 137, 261, 350, 461, 475, 542
Hpy188I	TCNGA	3 cut(s)	349, 676, 711
Hpy188III	TCNNGA	3 cut(s)	401, 521, 554
HpyAV	CCTTC	4 cut(s)	54, 329, 535, 740
HpyCH4III	ACNGT	1 cut(s)	646
HpyCH4V	TGCA	3 cut(s)	236, 332, 473
HpyF10VI	GCNNNNNNNGC	1 cut(s)	154
HpyF3I	CTNAG	5 cut(s)	255, 456, 492, 681, 723
Hsp92II	CATG	3 cut(s)	54, 377, 698
Kzo9I	GATC	2 cut(s)	189, 230
LmnI	GCTCC	4 cut(s)	121, 154, 449, 517
Lsp1109I	GCAGC	1 cut(s)	160
LweI	GCATC	2 cut(s)	319, 460
MaeI	CTAG	3 cut(s)	213, 225, 654
MaeIII	GTNAC	3 cut(s)	137, 267, 427
MalI	GATC	2 cut(s)	191, 232
MboI	GATC	2 cut(s)	189, 230
MflI	RGATCY	1 cut(s)	230
MluCI	AATT	2 cut(s)	59, 670
MlyI	GAGTC	1 cut(s)	542
MmeI	TCCRAC	1 cut(s)	143
MspA1I	CMGCKG	1 cut(s)	151
MspI	CCGG	2 cut(s)	447, 759
MspR9I	CCNGG	1 cut(s)	177
MvaI	CCWGG	1 cut(s)	177
MvnI	CGCG	1 cut(s)	188
MwoI	GCNNNNNNNGC	1 cut(s)	154
NdeII	GATC	2 cut(s)	189, 230
NlaIII	CATG	3 cut(s)	54, 377, 698
NlaIV	GGNNCC	3 cut(s)	117, 445, 513
NmeAIII	GCCGAG	1 cut(s)	439
NmuCI	GTSAC	2 cut(s)	267, 427
PfeI	GAWTC	4 cut(s)	240, 394, 408, 557
PkrI	GCNGC	2 cut(s)	150, 511
Ple19I	CGATCG	1 cut(s)	192
PleI	GAGTC	1 cut(s)	541
PpsI	GAGTC	1 cut(s)	541
Psp6I	CCWGG	1 cut(s)	175
PspGI	CCWGG	1 cut(s)	175
PspN4I	GGNNCC	3 cut(s)	117, 445, 513
PstNI	CAGNNNCTG	1 cut(s)	722
PsuI	RGATCY	1 cut(s)	230
PvuI	CGATCG	1 cut(s)	192
PvuII	CAGCTG	1 cut(s)	151
RgaI	GCGATCGC	1 cut(s)	192
SatI	GCNGC	2 cut(s)	149, 510
Sau3AI	GATC	2 cut(s)	189, 230
SchI	GAGTC	1 cut(s)	542
ScrFI	CCNGG	1 cut(s)	177
SfaAI	GCGATCGC	1 cut(s)	192
SfaNI	GCATC	2 cut(s)	319, 460
SgfI	GCGATCGC	1 cut(s)	192
SpeI	ACTAGT	1 cut(s)	212
Sse9I	AATT	2 cut(s)	59, 670
SsiI	CCGC	2 cut(s)	186, 509
SspMI	CTAG	3 cut(s)	213, 225, 654
StyD4I	CCNGG	1 cut(s)	175
StyI	CCWWGG	1 cut(s)	224
TaaI	ACNGT	1 cut(s)	646
TaqI	TCGA	2 cut(s)	536, 612
TaqII	GACCGA	1 cut(s)	446
TasI	AATT	2 cut(s)	59, 670
TauI	GCSGC	1 cut(s)	512
TfiI	GAWTC	4 cut(s)	240, 394, 408, 557
TscAI	CASTG	3 cut(s)	93, 250, 321
TseFI	GTSAC	2 cut(s)	267, 427
TseI	GCWGC	1 cut(s)	148
Tsp45I	GTSAC	2 cut(s)	267, 427
TspDTI	ATGAA	5 cut(s)	39, 407, 435, 554, 711
TspRI	CASTG	3 cut(s)	93, 250, 321
XapI	RAATTY	1 cut(s)	670
XcmI	CCANNNNNNNNNTGG	1 cut(s)	701
XmaJI	CCTAGG	1 cut(s)	224
XspI	CTAG	3 cut(s)	213, 225, 654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.