Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003275.1

Orthogroup ID

OG0001397

Physical Location & Seq

Genomic Coordinates Reverse (-)

177637 .. 179952

Gene Structure 2316 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003275.1_g000050.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

atgagctccttgcactatctctcgaccaccacagtgaatgaatggttgaaaatccaaaccaatcgagaagcgagctgctcgagcgtcacaagccctggcgttggccttcgctcatatttagtgttctgccctcttttcctcttcccccaatttcaatctttaatttttgaggttttatttatttatttcaagagcagagtgaaagtggaaatggcaagctcagtggagaaggaggaggttgtgaccttagagctaccagctccttctggttggattaagaagtttgtgcccaagcaaagtggaactcctaagaaaaatgagatcatatttacggctccaactggagaggagatctccaacaaaaaacagctggaacaatacctgaaggcacaccctggtggcccttcagtgtcagagtttgattggggcactggtgagaccccaaggagatcggctaggattagtgagaaggtcaaggcaactccatccccagagagtgatcccccaaagaagcgaagcagaaaaacatcagcttcgaagaaggatagcaaagagaaggaagctgcttctcaaggaactgaagagacaaaagttagtcatgtgcaagatgctgataaagctgtgaaggataacgatactgagatggaaaaggctgatgtgaaggaaaaccaagatgaggataaagtacaagatgcagataccaaggcagaagtagctcctcccgaagaagctaaagttgatgtaggaaccaatgatgggaaggaagttgagggttctggctctggagaacaaaatgaaaagaaaggtttggaaggaggaaaagtagaagaaaaggtcgggcaaccactgtctgaggcgcaggaaaaggaagtgactggggatcagggcaaagcagacatagctaccgcacatgaggacaaacatgaaggagaaggagaggaaaaagaaaaacataatgaaagtgaaactaaggagaaagaagcagcacaagggaaggatgaggaacataagagctcaggtgttcatgagttaggcaagaagattgaagcagcagtgactgacaattgcagcaacggcaatgaggctgcgaaggtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008327 GO:0036094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044444 GO:0044464 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBD

Protein Analysis

365

Amino Acids

39.95

Weight (kDa)

5.15

Isoelectric Point (pI)

43.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001397)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15790 AT3G15790 AT3G15790
fragaria_vesca	FvH4_1g03020 FvH4_1g03020 FvH4_1g03020 FvH4_1g03020 FvH4_6g29820 FvH4_6g29820 FvH4_6g29820 FvH4_6g29820 FvH4_6g29820 FvH4_6g29820
malus_domestica	MD00G1123000.v1.1 MD02G1029600.v1.1 MD15G1171000.v1.1 MD17G1210700.v1.1
prunus_persica	Prupe.3G086000_v2.0.a1 Prupe.7G245300_v2.0.a1
pyrus_communis	pycom02g02450 pycom09g14100 pycom15g15250 pycom17g21570
rosa_chinensis	RchiOBHm_Chr2g0088151 RchiOBHm_Chr2g0135641
rosa_laevigata	RLG00000015926 RLG00000019474
rosa_multiflora	Rmu_co8260895.1_g000001 Rmu_sc0002398.1_g000036 Rmu_sc0003275.1_g000050
rosa_roxburghii	Rroxscaffold_2G00109020 Rroxscaffold_2G00152920 Rroxscaffold_6G00395860 Rroxscaffold_7G00180210
rosa_rugosa	Rorug01G0481300 Rorug02G0325200
rosa_samantha	Rh2AG036300 Rh2AG376800 Rh2BG035500 Rh2BG076400 Rh2BG383100 Rh2CG036700 Rh2CG078600 Rh2CG362500 Rh2DG036000 Rh2DG399200 Rh5DG523600
rosa_wichuraiana	Rw1G013660 Rw2G002860 Rw2G030730 Rw4G021240 Rw4G021900 Rw7G017350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	906
AclWI	GGATC	2 cut(s)	494, 888
AcuI	CTGAAG	3 cut(s)	390, 404, 600
AfaI	GTAC	1 cut(s)	687
AfiI	CCNNNNNNNGG	3 cut(s)	101, 676, 756
AgsI	TTSAA	4 cut(s)	49, 155, 190, 1046
AjnI	CCWGG	2 cut(s)	94, 394
AleI	CACNNNNGTG	2 cut(s)	32, 396
Alw21I	GWGCWC	2 cut(s)	8, 1016
Alw26I	GTCTC	2 cut(s)	431, 578
AlwI	GGATC	2 cut(s)	494, 888
AlwNI	CAGNNNCTG	1 cut(s)	1058
Ama87I	CYCGRG	1 cut(s)	79
AoxI	GGCC	2 cut(s)	103, 400
ApeKI	GCWGC	6 cut(s)	75, 563, 983, 1049, 1068, 1085
AspLEI	GCGC	1 cut(s)	859
AspS9I	GGNCC	1 cut(s)	401
AsuHPI	GGTGA	1 cut(s)	446
AsuII	TTCGAA	1 cut(s)	536
AvaI	CYCGRG	1 cut(s)	79
BaeGI	GKGCMC	2 cut(s)	291, 431
BanII	GRGCYC	2 cut(s)	8, 1016
Bbv12I	GWGCWC	2 cut(s)	8, 1016
BbvI	GCAGC	6 cut(s)	62, 550, 995, 1061, 1072, 1080
BccI	CCATC	3 cut(s)	493, 637, 749
BceAI	ACGGC	2 cut(s)	348, 1090
BciT130I	CCWGG	2 cut(s)	96, 396
BcoDI	GTCTC	2 cut(s)	431, 578
BfaI	CTAG	1 cut(s)	456
BglII	AGATCT	1 cut(s)	351
BisI	GCNGC	6 cut(s)	76, 564, 984, 1050, 1069, 1086
BlsI	GCNGC	6 cut(s)	77, 565, 985, 1051, 1070, 1087
Bme1390I	CCNGG	2 cut(s)	96, 396
BmeT110I	CYCGRG	1 cut(s)	79
BmgT120I	GGNCC	1 cut(s)	401
BmiI	GGNNCC	2 cut(s)	336, 748
BmrFI	CCNGG	2 cut(s)	96, 396
BmrI	ACTGGG	1 cut(s)	885
BmsI	GCATC	2 cut(s)	598, 682
BmuI	ACTGGG	1 cut(s)	885
BplI	GAGNNNNNCTC	2 cut(s)	338, 370
BpmI	CTGGAG	2 cut(s)	363, 804
Bpu10I	CCTNAGC	1 cut(s)	1015
Bpu14I	TTCGAA	1 cut(s)	536
BpuEI	CTTGAG	1 cut(s)	555
BsaI	GGTCTC	1 cut(s)	431
BsaJI	CCNNGG	4 cut(s)	94, 394, 443, 702
BsaXI	ACNNNNNCTCC	2 cut(s)	807, 837
Bsc4I	CCNNNNNNNGG	3 cut(s)	101, 676, 756
Bse1I	ACTGG	3 cut(s)	346, 436, 880
Bse3DI	GCAATG	1 cut(s)	1084
BseBI	CCWGG	2 cut(s)	96, 396
BseDI	CCNNGG	4 cut(s)	94, 394, 443, 702
BseGI	GGATG	2 cut(s)	485, 1003
BseLI	CCNNNNNNNGG	3 cut(s)	101, 676, 756
BseMI	GCAATG	1 cut(s)	1084
BseMII	CTCAG	4 cut(s)	234, 630, 843, 1029
BseNI	ACTGG	3 cut(s)	346, 436, 880
BseRI	GAGGAG	3 cut(s)	248, 362, 708
BseSI	GKGCMC	2 cut(s)	291, 431
BseXI	GCAGC	6 cut(s)	62, 550, 995, 1061, 1072, 1080
BshFI	GGCC	2 cut(s)	105, 402
BsiHKAI	GWGCWC	2 cut(s)	8, 1016
BsiHKCI	CYCGRG	1 cut(s)	79
BslI	CCNNNNNNNGG	3 cut(s)	101, 676, 756
BsmAI	GTCTC	2 cut(s)	431, 578
BsnI	GGCC	2 cut(s)	105, 402
Bso31I	GGTCTC	1 cut(s)	431
BsoBI	CYCGRG	1 cut(s)	79
Bsp119I	TTCGAA	1 cut(s)	536
Bsp1286I	GDGCHC	4 cut(s)	8, 291, 431, 1016
Bsp143I	GATC	5 cut(s)	321, 351, 449, 499, 880
BspACI	CCGC	1 cut(s)	906
BspANI	GGCC	2 cut(s)	105, 402
BspCNI	CTCAG	4 cut(s)	233, 631, 844, 1028
BspHI	TCATGA	1 cut(s)	1024
BspLI	GGNNCC	2 cut(s)	336, 748
BspPI	GGATC	2 cut(s)	494, 888
BspT104I	TTCGAA	1 cut(s)	536
BspTNI	GGTCTC	1 cut(s)	431
BsrDI	GCAATG	1 cut(s)	1084
BsrI	ACTGG	3 cut(s)	346, 436, 880
BssECI	CCNNGG	4 cut(s)	94, 394, 443, 702
BssMI	GATC	5 cut(s)	321, 351, 449, 499, 880
BssT1I	CCWWGG	2 cut(s)	443, 702
Bst2UI	CCWGG	2 cut(s)	96, 396
Bst4CI	ACNGT	2 cut(s)	34, 849
Bst6I	CTCTTC	2 cut(s)	146, 576
BstBI	TTCGAA	1 cut(s)	536
BstC8I	GCNNGC	2 cut(s)	73, 217
BstDEI	CTNAG	7 cut(s)	220, 247, 309, 639, 852, 969, 1015
BstF5I	GGATG	2 cut(s)	485, 1003
BstHHI	GCGC	1 cut(s)	859
BstKTI	GATC	5 cut(s)	324, 354, 452, 502, 883
BstMAI	GTCTC	2 cut(s)	431, 578
BstMBI	GATC	5 cut(s)	321, 351, 449, 499, 880
BstMWI	GCNNNNNNNGC	6 cut(s)	81, 90, 617, 713, 899, 1074
BstNI	CCWGG	2 cut(s)	96, 396
BstSCI	CCNGG	2 cut(s)	94, 394
BstSLI	GKGCMC	2 cut(s)	291, 431
BstV1I	GCAGC	6 cut(s)	62, 550, 995, 1061, 1072, 1080
BstX2I	RGATCY	1 cut(s)	351
BstYI	RGATCY	1 cut(s)	351
BsuRI	GGCC	2 cut(s)	105, 402
BtsCI	GGATG	2 cut(s)	485, 1003
BtsI	GCAGTG	1 cut(s)	1059
BtsIMutI	CAGTG	6 cut(s)	39, 228, 414, 429, 845, 1059
Cac8I	GCNNGC	2 cut(s)	73, 217
CaiI	CAGNNNCTG	1 cut(s)	1058
CciI	TCATGA	1 cut(s)	1024
CfoI	GCGC	1 cut(s)	859
Cfr13I	GGNCC	1 cut(s)	401
CseI	GACGC	1 cut(s)	73
Csp6I	GTAC	1 cut(s)	686
CspCI	CAANNNNNGTGG	4 cut(s)	204, 239, 280, 315
CviAII	CATG	4 cut(s)	599, 911, 923, 1025
CviQI	GTAC	1 cut(s)	686
DdeI	CTNAG	7 cut(s)	220, 247, 309, 639, 852, 969, 1015
DpnI	GATC	5 cut(s)	323, 353, 451, 501, 882
DpnII	GATC	5 cut(s)	321, 351, 449, 499, 880
Eam1104I	CTCTTC	2 cut(s)	146, 576
EarI	CTCTTC	2 cut(s)	146, 576
Ecl136II	GAGCTC	2 cut(s)	6, 1014
Eco130I	CCWWGG	2 cut(s)	443, 702
Eco24I	GRGCYC	2 cut(s)	8, 1016
Eco31I	GGTCTC	1 cut(s)	431
Eco53kI	GAGCTC	2 cut(s)	6, 1014
Eco57I	CTGAAG	3 cut(s)	390, 404, 600
Eco88I	CYCGRG	1 cut(s)	79
EcoICRI	GAGCTC	2 cut(s)	6, 1014
EcoRII	CCWGG	2 cut(s)	94, 394
EcoT14I	CCWWGG	2 cut(s)	443, 702
EcoT38I	GRGCYC	2 cut(s)	8, 1016
ErhI	CCWWGG	2 cut(s)	443, 702
FaeI	CATG	4 cut(s)	602, 914, 926, 1028
FaiI	YATR	9 cut(s)	115, 326, 600, 899, 912, 924, 954, 1008, 1026
FatI	CATG	4 cut(s)	598, 910, 922, 1024
Fnu4HI	GCNGC	6 cut(s)	76, 564, 984, 1050, 1069, 1086
FokI	GGATG	2 cut(s)	472, 1010
FriOI	GRGCYC	2 cut(s)	8, 1016
Fsp4HI	GCNGC	6 cut(s)	76, 564, 984, 1050, 1069, 1086
FspBI	CTAG	1 cut(s)	456
GlaI	GCGC	1 cut(s)	858
GluI	GCNGC	6 cut(s)	76, 564, 984, 1050, 1069, 1086
GsuI	CTGGAG	2 cut(s)	363, 804
HaeIII	GGCC	2 cut(s)	105, 402
HgaI	GACGC	1 cut(s)	73
HhaI	GCGC	1 cut(s)	859
Hin1II	CATG	4 cut(s)	602, 914, 926, 1028
Hin6I	GCGC	1 cut(s)	857
HinP1I	GCGC	1 cut(s)	857
HphI	GGTGA	1 cut(s)	446
Hpy188I	TCNGA	2 cut(s)	415, 853
Hpy188III	TCNNGA	6 cut(s)	22, 65, 190, 722, 783, 1025
HpyCH4III	ACNGT	2 cut(s)	34, 849
HpyCH4V	TGCA	4 cut(s)	13, 604, 695, 1068
HpyF10VI	GCNNNNNNNGC	6 cut(s)	81, 90, 617, 713, 899, 1074
HpyF3I	CTNAG	7 cut(s)	220, 247, 309, 639, 852, 969, 1015
Hsp92II	CATG	4 cut(s)	602, 914, 926, 1028
HspAI	GCGC	1 cut(s)	857
Kzo9I	GATC	5 cut(s)	321, 351, 449, 499, 880
LmnI	GCTCC	4 cut(s)	11, 265, 340, 721
Lsp1109I	GCAGC	6 cut(s)	62, 550, 995, 1061, 1072, 1080
LweI	GCATC	2 cut(s)	598, 682
MaeI	CTAG	1 cut(s)	456
MaeIII	GTNAC	4 cut(s)	85, 241, 871, 1054
MalI	GATC	5 cut(s)	323, 353, 451, 501, 882
MboI	GATC	5 cut(s)	321, 351, 449, 499, 880
MboII	GAAGA	6 cut(s)	133, 550, 593, 737, 839, 1051
MfeI	CAATTG	1 cut(s)	1063
MflI	RGATCY	1 cut(s)	351
MhlI	GDGCHC	4 cut(s)	8, 291, 431, 1016
MluCI	AATT	3 cut(s)	149, 162, 1063
MmeI	TCCRAC	3 cut(s)	251, 362, 381
MseI	TTAA	2 cut(s)	161, 276
MslI	CAYNNNNRTG	2 cut(s)	32, 396
MspA1I	CMGCKG	1 cut(s)	370
MspR9I	CCNGG	2 cut(s)	96, 396
MunI	CAATTG	1 cut(s)	1063
MvaI	CCWGG	2 cut(s)	96, 396
MwoI	GCNNNNNNNGC	6 cut(s)	81, 90, 617, 713, 899, 1074
NdeII	GATC	5 cut(s)	321, 351, 449, 499, 880
NlaIII	CATG	4 cut(s)	602, 914, 926, 1028
NlaIV	GGNNCC	2 cut(s)	336, 748
NmuCI	GTSAC	4 cut(s)	85, 241, 871, 1054
NspV	TTCGAA	1 cut(s)	536
OliI	CACNNNNGTG	2 cut(s)	32, 396
PaeR7I	CTCGAG	1 cut(s)	79
PagI	TCATGA	1 cut(s)	1024
PkrI	GCNGC	6 cut(s)	77, 565, 985, 1051, 1070, 1087
Psp124BI	GAGCTC	2 cut(s)	8, 1016
Psp6I	CCWGG	2 cut(s)	94, 394
PspGI	CCWGG	2 cut(s)	94, 394
PspN4I	GGNNCC	2 cut(s)	336, 748
PspPI	GGNCC	1 cut(s)	401
PspXI	VCTCGAGB	1 cut(s)	79
PstNI	CAGNNNCTG	1 cut(s)	1058
PsuI	RGATCY	1 cut(s)	351
PvuII	CAGCTG	1 cut(s)	370
RsaI	GTAC	1 cut(s)	687
RsaNI	GTAC	1 cut(s)	686
RseI	CAYNNNNRTG	2 cut(s)	32, 396
SacI	GAGCTC	2 cut(s)	8, 1016
SaqAI	TTAA	2 cut(s)	161, 276
SatI	GCNGC	6 cut(s)	76, 564, 984, 1050, 1069, 1086
Sau3AI	GATC	5 cut(s)	321, 351, 449, 499, 880
Sau96I	GGNCC	1 cut(s)	401
ScrFI	CCNGG	2 cut(s)	96, 396
SduI	GDGCHC	4 cut(s)	8, 291, 431, 1016
SfaNI	GCATC	2 cut(s)	598, 682
Sfr274I	CTCGAG	1 cut(s)	79
SfuI	TTCGAA	1 cut(s)	536
SlaI	CTCGAG	1 cut(s)	79
SmiMI	CAYNNNNRTG	2 cut(s)	32, 396
SmlI	CTYRAG	2 cut(s)	79, 570
SmoI	CTYRAG	2 cut(s)	79, 570
Sse9I	AATT	3 cut(s)	149, 162, 1063
SsiI	CCGC	1 cut(s)	906
SspMI	CTAG	1 cut(s)	456
SstI	GAGCTC	2 cut(s)	8, 1016
StyD4I	CCNGG	2 cut(s)	94, 394
StyI	CCWWGG	2 cut(s)	443, 702
TaaI	ACNGT	2 cut(s)	34, 849
TaqI	TCGA	4 cut(s)	23, 64, 80, 536
TasI	AATT	3 cut(s)	149, 162, 1063
TatI	WGTACW	1 cut(s)	685
Tru1I	TTAA	2 cut(s)	161, 276
Tru9I	TTAA	2 cut(s)	161, 276
TscAI	CASTG	6 cut(s)	39, 228, 414, 436, 852, 1059
TseFI	GTSAC	4 cut(s)	85, 241, 871, 1054
TseI	GCWGC	6 cut(s)	75, 563, 983, 1049, 1068, 1085
Tsp45I	GTSAC	4 cut(s)	85, 241, 871, 1054
TspDTI	ATGAA	5 cut(s)	54, 810, 939, 972, 1013
TspRI	CASTG	6 cut(s)	39, 228, 414, 436, 852, 1059
XhoI	CTCGAG	1 cut(s)	79
XspI	CTAG	1 cut(s)	456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.