Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0001397

Physical Location & Seq

Genomic Coordinates Forward (+)

20922966 .. 20926002

Gene Structure 3037 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G245300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGCAAGCTCAGTGGAGAAGGAGGGTGAGGAGGTTGTGTCCTTAGAACTACCAGCTCCTTCGGGTTGGGTTAAGAAGTTTCTGCCCAAGCAAAGTGGAACTCCTAAGAAAAATGAGATCATATTTACAGCTCCAACGGGAGAGGAGATCACCAACAAAAGACAGTTGGAACAGTACCTGAAAGCACACCCTGGGGGTCCTGCAGTATCAGAATTTGATTGGAGCACTGGTGAGACACCAAGGAGATCAGCAAGGATTAGTGAGAAGGCCAAAGCAACTCCACCACCAGAAAGTGAGCCCCCAAAGAAGCGAAGCAGAAAATCAACTTCGGCAAAGAAGGATAGCAAAGAAAAGCAAGCTGGTCCTGAAGGAGCCGAGGAGACAAAAATTAGTGATGTGCAAGCTGCTGAAAAAGCTGAGAAGGTTGAAGATACTGAGATGGAAAAGGATGATGTGAAGGACAACCAAGATGAGGAAAAAGCACCAGATGCAGACACCAAGACAGAAGTAGCGCAACCTGAAGAAACAAAAGTTGAACAAGAAGCTAACATACCGGGCGATGCTGAAGAGTGCAAGAAAACTAGCAAAGCAGGTCCAGAAGATTCAAAAGCATCCATTGATGGAGGTTCTGGTTTTGGAAAACAAACCGAAAAAGAAAATGCGGAAGGGGAAAAAGTAGAAGAGAAGGGCGAGCAACCACAGGTTGAGGTAGGGAAAGAGGAAGAGACAGGGGATCAGGGCAAAGCCAAAATTGCTATTGTTGATGAGGACAAACATGAAGTAGAAGGAGAAGAAAAAGAGAAACATAACGAAGTTGCTATTGAAACTGAAGTAGAAATCGAGGAGAAAGAAGCAGCAAAAGGGAACACTGAGGGAAAAAATAGTTCAGGTGTTCATGAAGCGGGCAAGAAGGTTGAAGGAGAAGTGATTGAGAATGGCGGCCCAGGCAATGAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008327 GO:0036094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044444 GO:0044464 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBD

Protein Analysis

320

Amino Acids

34.5

Weight (kDa)

4.71

Isoelectric Point (pI)

56.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001397)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15790 AT3G15790 AT3G15790
fragaria_vesca	FvH4_1g03020 FvH4_1g03020 FvH4_1g03020 FvH4_1g03020 FvH4_6g29820 FvH4_6g29820 FvH4_6g29820 FvH4_6g29820 FvH4_6g29820 FvH4_6g29820
malus_domestica	MD00G1123000.v1.1 MD02G1029600.v1.1 MD15G1171000.v1.1 MD17G1210700.v1.1
prunus_persica	Prupe.3G086000_v2.0.a1 Prupe.7G245300_v2.0.a1
pyrus_communis	pycom02g02450 pycom09g14100 pycom15g15250 pycom17g21570
rosa_chinensis	RchiOBHm_Chr2g0088151 RchiOBHm_Chr2g0135641
rosa_laevigata	RLG00000015926 RLG00000019474
rosa_multiflora	Rmu_co8260895.1_g000001 Rmu_sc0002398.1_g000036 Rmu_sc0003275.1_g000050
rosa_roxburghii	Rroxscaffold_2G00109020 Rroxscaffold_2G00152920 Rroxscaffold_6G00395860 Rroxscaffold_7G00180210
rosa_rugosa	Rorug01G0481300 Rorug02G0325200
rosa_samantha	Rh2AG036300 Rh2AG376800 Rh2BG035500 Rh2BG076400 Rh2BG383100 Rh2CG036700 Rh2CG078600 Rh2CG362500 Rh2DG036000 Rh2DG399200 Rh5DG523600
rosa_wichuraiana	Rw1G013660 Rw2G002860 Rw2G030730 Rw4G021240 Rw4G021900 Rw7G017350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	581
AciI	CCGC	3 cut(s)	662, 902, 939
AclWI	GGATC	1 cut(s)	741
AcsI	RAATTY	1 cut(s)	212
AcuI	CTGAAG	4 cut(s)	387, 540, 585, 849
AfaI	GTAC	1 cut(s)	176
AfiI	CCNNNNNNNGG	1 cut(s)	472
AgsI	TTSAA	5 cut(s)	428, 536, 606, 824, 917
AjnI	CCWGG	2 cut(s)	190, 943
AluBI	AGCT	8 cut(s)	9, 56, 131, 359, 404, 416, 545, 956
AluI	AGCT	8 cut(s)	9, 56, 131, 359, 404, 416, 545, 956
Alw21I	GWGCWC	1 cut(s)	227
Alw26I	GTCTC	3 cut(s)	227, 374, 719
AlwI	GGATC	1 cut(s)	741
AlwNI	CAGNNNCTG	1 cut(s)	178
AoxI	GGCC	2 cut(s)	267, 940
ApeKI	GCWGC	2 cut(s)	404, 854
ApoI	RAATTY	1 cut(s)	212
AspLEI	GCGC	1 cut(s)	514
AspS9I	GGNCC	4 cut(s)	197, 362, 593, 941
AsuC2I	CCSGG	1 cut(s)	555
AsuHPI	GGTGA	3 cut(s)	38, 142, 242
AvaII	GGWCC	3 cut(s)	197, 362, 593
BanII	GRGCYC	1 cut(s)	300
BarI	GAAGNNNNNNTAC	2 cut(s)	534, 566
Bbv12I	GWGCWC	1 cut(s)	227
BbvI	GCAGC	2 cut(s)	391, 866
BccI	CCATC	2 cut(s)	433, 614
BciT130I	CCWGG	2 cut(s)	192, 945
BcnI	CCSGG	1 cut(s)	555
BcoDI	GTCTC	3 cut(s)	227, 374, 719
BfaI	CTAG	1 cut(s)	582
BfmI	CTRYAG	1 cut(s)	201
BfuAI	ACCTGC	1 cut(s)	581
BisI	GCNGC	3 cut(s)	405, 855, 940
BlsI	GCNGC	3 cut(s)	406, 856, 941
Bme1390I	CCNGG	3 cut(s)	192, 555, 945
Bme18I	GGWCC	3 cut(s)	197, 362, 593
BmgT120I	GGNCC	4 cut(s)	197, 362, 593, 941
BmiI	GGNNCC	2 cut(s)	198, 373
BmrFI	CCNGG	3 cut(s)	192, 555, 945
BmsI	GCATC	3 cut(s)	478, 550, 620
BpuMI	CCSGG	1 cut(s)	555
BsaJI	CCNNGG	5 cut(s)	190, 191, 239, 375, 943
BsaXI	ACNNNNNCTCC	4 cut(s)	23, 53, 214, 244
Bsc4I	CCNNNNNNNGG	1 cut(s)	472
Bse1I	ACTGG	1 cut(s)	232
Bse3DI	GCAATG	1 cut(s)	955
BseBI	CCWGG	2 cut(s)	192, 945
BseDI	CCNNGG	5 cut(s)	190, 191, 239, 375, 943
BseGI	GGATG	2 cut(s)	454, 611
BseLI	CCNNNNNNNGG	1 cut(s)	472
BseMI	GCAATG	1 cut(s)	955
BseMII	CTCAG	4 cut(s)	24, 408, 426, 861
BseNI	ACTGG	1 cut(s)	232
BseRI	GAGGAG	4 cut(s)	44, 158, 392, 857
BseXI	GCAGC	2 cut(s)	391, 866
BshFI	GGCC	2 cut(s)	269, 942
BsiHKAI	GWGCWC	1 cut(s)	227
BsiSI	CCGG	1 cut(s)	554
BslI	CCNNNNNNNGG	1 cut(s)	472
BsmAI	GTCTC	3 cut(s)	227, 374, 719
BsnI	GGCC	2 cut(s)	269, 942
Bsp1286I	GDGCHC	2 cut(s)	227, 300
Bsp143I	GATC	4 cut(s)	117, 147, 245, 733
BspACI	CCGC	3 cut(s)	662, 902, 939
BspANI	GGCC	2 cut(s)	269, 942
BspCNI	CTCAG	4 cut(s)	23, 409, 427, 862
BspHI	TCATGA	1 cut(s)	895
BspLI	GGNNCC	2 cut(s)	198, 373
BspMAI	CTGCAG	1 cut(s)	205
BspMI	ACCTGC	1 cut(s)	581
BspPI	GGATC	1 cut(s)	741
BsrDI	GCAATG	1 cut(s)	955
BsrI	ACTGG	1 cut(s)	232
BssECI	CCNNGG	5 cut(s)	190, 191, 239, 375, 943
BssMI	GATC	4 cut(s)	117, 147, 245, 733
BssT1I	CCWWGG	1 cut(s)	239
Bst2UI	CCWGG	2 cut(s)	192, 945
Bst4CI	ACNGT	2 cut(s)	165, 174
Bst6I	CTCTTC	3 cut(s)	561, 675, 717
BstAPI	GCANNNNNTGC	1 cut(s)	488
BstC8I	GCNNGC	5 cut(s)	7, 357, 402, 692, 904
BstDEI	CTNAG	6 cut(s)	10, 43, 105, 417, 435, 870
BstF5I	GGATG	2 cut(s)	454, 611
BstHHI	GCGC	1 cut(s)	514
BstKTI	GATC	4 cut(s)	120, 150, 248, 736
BstMAI	GTCTC	3 cut(s)	227, 374, 719
BstMBI	GATC	4 cut(s)	117, 147, 245, 733
BstMWI	GCNNNNNNNGC	4 cut(s)	413, 488, 752, 945
BstNI	CCWGG	2 cut(s)	192, 945
BstSCI	CCNGG	3 cut(s)	190, 553, 943
BstSFI	CTRYAG	1 cut(s)	201
BstV1I	GCAGC	2 cut(s)	391, 866
BsuRI	GGCC	2 cut(s)	269, 942
BtgZI	GCGATG	1 cut(s)	573
BtsCI	GGATG	2 cut(s)	454, 611
BtsIMutI	CAGTG	3 cut(s)	18, 225, 867
BveI	ACCTGC	1 cut(s)	581
Cac8I	GCNNGC	5 cut(s)	7, 357, 402, 692, 904
CaiI	CAGNNNCTG	1 cut(s)	178
CciI	TCATGA	1 cut(s)	895
CfoI	GCGC	1 cut(s)	514
Cfr13I	GGNCC	4 cut(s)	197, 362, 593, 941
Csp6I	GTAC	1 cut(s)	175
CspCI	CAANNNNNGTGG	3 cut(s)	29, 76, 111
CviAII	CATG	2 cut(s)	776, 896
CviQI	GTAC	1 cut(s)	175
DdeI	CTNAG	6 cut(s)	10, 43, 105, 417, 435, 870
DpnI	GATC	4 cut(s)	119, 149, 247, 735
DpnII	GATC	4 cut(s)	117, 147, 245, 733
Eam1104I	CTCTTC	3 cut(s)	561, 675, 717
EarI	CTCTTC	3 cut(s)	561, 675, 717
Eco130I	CCWWGG	1 cut(s)	239
Eco24I	GRGCYC	1 cut(s)	300
Eco47I	GGWCC	3 cut(s)	197, 362, 593
Eco57I	CTGAAG	4 cut(s)	387, 540, 585, 849
EcoO109I	RGGNCCY	1 cut(s)	197
EcoRII	CCWGG	2 cut(s)	190, 943
EcoT14I	CCWWGG	1 cut(s)	239
EcoT38I	GRGCYC	1 cut(s)	300
ErhI	CCWWGG	1 cut(s)	239
FaeI	CATG	2 cut(s)	779, 899
FaiI	YATR	5 cut(s)	122, 551, 777, 807, 897
FatI	CATG	2 cut(s)	775, 895
FauI	CCCGC	1 cut(s)	895
Fnu4HI	GCNGC	3 cut(s)	405, 855, 940
FokI	GGATG	2 cut(s)	461, 598
FriOI	GRGCYC	1 cut(s)	300
Fsp4HI	GCNGC	3 cut(s)	405, 855, 940
FspBI	CTAG	1 cut(s)	582
GlaI	GCGC	1 cut(s)	513
GluI	GCNGC	3 cut(s)	405, 855, 940
HaeIII	GGCC	2 cut(s)	269, 942
HapII	CCGG	1 cut(s)	554
HhaI	GCGC	1 cut(s)	514
Hin1II	CATG	2 cut(s)	779, 899
Hin6I	GCGC	1 cut(s)	512
HinP1I	GCGC	1 cut(s)	512
HindIII	AAGCTT	1 cut(s)	954
HinfI	GANTC	1 cut(s)	602
HpaII	CCGG	1 cut(s)	554
HphI	GGTGA	3 cut(s)	38, 142, 242
Hpy188I	TCNGA	1 cut(s)	211
Hpy188III	TCNNGA	3 cut(s)	365, 596, 896
HpyCH4III	ACNGT	2 cut(s)	165, 174
HpyCH4V	TGCA	4 cut(s)	203, 400, 491, 573
HpyF10VI	GCNNNNNNNGC	4 cut(s)	413, 488, 752, 945
HpyF3I	CTNAG	6 cut(s)	10, 43, 105, 417, 435, 870
Hsp92II	CATG	2 cut(s)	779, 899
HspAI	GCGC	1 cut(s)	512
Kzo9I	GATC	4 cut(s)	117, 147, 245, 733
LmnI	GCTCC	4 cut(s)	61, 136, 222, 371
Lsp1109I	GCAGC	2 cut(s)	391, 866
LweI	GCATC	3 cut(s)	478, 550, 620
MaeI	CTAG	1 cut(s)	582
MalI	GATC	4 cut(s)	119, 149, 247, 735
MboI	GATC	4 cut(s)	117, 147, 245, 733
MboII	GAAGA	7 cut(s)	440, 533, 578, 611, 692, 734, 803
MhlI	GDGCHC	2 cut(s)	227, 300
MluCI	AATT	3 cut(s)	212, 387, 750
MmeI	TCCRAC	2 cut(s)	147, 158
MseI	TTAA	1 cut(s)	72
MspI	CCGG	1 cut(s)	554
MspR9I	CCNGG	3 cut(s)	192, 555, 945
MvaI	CCWGG	2 cut(s)	192, 945
MwoI	GCNNNNNNNGC	4 cut(s)	413, 488, 752, 945
NciI	CCSGG	1 cut(s)	555
NdeII	GATC	4 cut(s)	117, 147, 245, 733
NlaIII	CATG	2 cut(s)	779, 899
NlaIV	GGNNCC	2 cut(s)	198, 373
NmeAIII	GCCGAG	1 cut(s)	400
PagI	TCATGA	1 cut(s)	895
PasI	CCCWGGG	1 cut(s)	191
PfeI	GAWTC	1 cut(s)	602
PkrI	GCNGC	3 cut(s)	406, 856, 941
PpuMI	RGGWCCY	1 cut(s)	197
Psp5II	RGGWCCY	1 cut(s)	197
Psp6I	CCWGG	2 cut(s)	190, 943
PspGI	CCWGG	2 cut(s)	190, 943
PspN4I	GGNNCC	2 cut(s)	198, 373
PspPI	GGNCC	4 cut(s)	197, 362, 593, 941
PspPPI	RGGWCCY	1 cut(s)	197
PstI	CTGCAG	1 cut(s)	205
PstNI	CAGNNNCTG	1 cut(s)	178
RsaI	GTAC	1 cut(s)	176
RsaNI	GTAC	1 cut(s)	175
SaqAI	TTAA	1 cut(s)	72
SatI	GCNGC	3 cut(s)	405, 855, 940
Sau3AI	GATC	4 cut(s)	117, 147, 245, 733
Sau96I	GGNCC	4 cut(s)	197, 362, 593, 941
ScrFI	CCNGG	3 cut(s)	192, 555, 945
SduI	GDGCHC	2 cut(s)	227, 300
SfaNI	GCATC	3 cut(s)	478, 550, 620
SfcI	CTRYAG	1 cut(s)	201
SinI	GGWCC	3 cut(s)	197, 362, 593
Sse9I	AATT	3 cut(s)	212, 387, 750
SsiI	CCGC	3 cut(s)	662, 902, 939
SspMI	CTAG	1 cut(s)	582
StyD4I	CCNGG	3 cut(s)	190, 553, 943
StyI	CCWWGG	1 cut(s)	239
TaaI	ACNGT	2 cut(s)	165, 174
TaqI	TCGA	1 cut(s)	840
TasI	AATT	3 cut(s)	212, 387, 750
TauI	GCSGC	1 cut(s)	942
TfiI	GAWTC	1 cut(s)	602
Tru1I	TTAA	1 cut(s)	72
Tru9I	TTAA	1 cut(s)	72
TscAI	CASTG	3 cut(s)	18, 232, 874
TseI	GCWGC	2 cut(s)	404, 854
TspDTI	ATGAA	3 cut(s)	792, 884, 912
TspRI	CASTG	3 cut(s)	18, 232, 874
VpaK11BI	GGWCC	3 cut(s)	197, 362, 593
XapI	RAATTY	1 cut(s)	212
XspI	CTAG	1 cut(s)	582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.