Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0001397

Physical Location & Seq

Genomic Coordinates Reverse (-)

13212768 .. 13215003

Gene Structure 2236 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1171000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGTTTCTGCCCAAGCAAAGTGGAACTCCTAAGAAAAATGAGATTGTATTTACAGCTCCAACAGGAGAGGAGATCACCAGCAAAAGACAGTTGGAACAGTACCTGAAAGCACACCCTGGTGGTCCTGCAGTATCAGAGTTTGATTGGGGCACTGGTGAGACACCAAGGCGGTCAGCAAGGATTAGTGAGAAGGAAGCTGCTCCTGAAGGAGCCGAGGAGACGAAAAGTAGTGACGTGCAAGATGCTGAAAAAGCTGAGAAAGATGCAGATACTGAGATGGAAAAGGTTGATGTGAAGGAAAACCAAGATGTGGAAAAATCACCAGCTCCTCCCAAAGAAGCCAAAGTTCAACAAGAAGCTAACATACCTGGCGATGCTCCGGCTCTGGGAGATTCAACCGCATCCATTGATGGGAAGGACGTTGAAGGGGAAAAGGAAGAAGAAAAGGTTGAGCAACCACCAGTTGGGGTAGGGAAAGAGGAAGTGACTGGGTATCAGGGCAAAGCCGGTATAGCTATTGGAGGTGCGGACAAAGATGAAGGAGAAGTAGAGGAAAAAGGGAACGAAGAGGAACATGATAGTTCAGGTGTTCATGAAGCAGGCAAGAAGGTCGAAGAGAATGGCAGCCCCGGCAATGAGGCTGCTAAGGTCGATCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008327 GO:0036094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044444 GO:0044464 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBD

Protein Analysis

220

Amino Acids

23.28

Weight (kDa)

4.49

Isoelectric Point (pI)

47.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MBD	PF01429	2 - 56	6.9e-09	Methyl-CpG binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001397)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15790 AT3G15790 AT3G15790
fragaria_vesca	FvH4_1g03020 FvH4_1g03020 FvH4_1g03020 FvH4_1g03020 FvH4_6g29820 FvH4_6g29820 FvH4_6g29820 FvH4_6g29820 FvH4_6g29820 FvH4_6g29820
malus_domestica	MD00G1123000.v1.1 MD02G1029600.v1.1 MD15G1171000.v1.1 MD17G1210700.v1.1
prunus_persica	Prupe.3G086000_v2.0.a1 Prupe.7G245300_v2.0.a1
pyrus_communis	pycom02g02450 pycom09g14100 pycom15g15250 pycom17g21570
rosa_chinensis	RchiOBHm_Chr2g0088151 RchiOBHm_Chr2g0135641
rosa_laevigata	RLG00000015926 RLG00000019474
rosa_multiflora	Rmu_co8260895.1_g000001 Rmu_sc0002398.1_g000036 Rmu_sc0003275.1_g000050
rosa_roxburghii	Rroxscaffold_2G00109020 Rroxscaffold_2G00152920 Rroxscaffold_6G00395860 Rroxscaffold_7G00180210
rosa_rugosa	Rorug01G0481300 Rorug02G0325200
rosa_samantha	Rh2AG036300 Rh2AG376800 Rh2BG035500 Rh2BG076400 Rh2BG383100 Rh2CG036700 Rh2CG078600 Rh2CG362500 Rh2DG036000 Rh2DG399200 Rh5DG523600
rosa_wichuraiana	Rw1G013660 Rw2G002860 Rw2G030730 Rw4G021240 Rw4G021900 Rw7G017350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	310, 464
AciI	CCGC	3 cut(s)	169, 399, 527
AclWI	GGATC	1 cut(s)	647
AcuI	CTGAAG	1 cut(s)	225
AfaI	GTAC	1 cut(s)	101
AfiI	CCNNNNNNNGG	4 cut(s)	310, 386, 411, 464
AgsI	TTSAA	3 cut(s)	350, 396, 425
AjiI	CACGTC	1 cut(s)	235
AjnI	CCWGG	2 cut(s)	115, 367
AleI	CACNNNNGTG	1 cut(s)	117
AluBI	AGCT	6 cut(s)	56, 197, 254, 326, 359, 515
AluI	AGCT	6 cut(s)	56, 197, 254, 326, 359, 515
Alw26I	GTCTC	2 cut(s)	152, 212
AlwI	GGATC	1 cut(s)	647
AlwNI	CAGNNNCTG	2 cut(s)	103, 272
ApeKI	GCWGC	3 cut(s)	197, 624, 641
AspS9I	GGNCC	1 cut(s)	122
AsuC2I	CCSGG	1 cut(s)	630
AsuHPI	GGTGA	3 cut(s)	67, 167, 312
AvaII	GGWCC	1 cut(s)	122
BaeGI	GKGCMC	1 cut(s)	152
BarI	GAAGNNNNNNTAC	2 cut(s)	348, 380
BbvI	GCAGC	3 cut(s)	184, 628, 636
BccI	CCATC	2 cut(s)	271, 404
BcgI	CGANNNNNNTGC	2 cut(s)	592, 626
BciT130I	CCWGG	2 cut(s)	117, 369
BcnI	CCSGG	1 cut(s)	630
BcoDI	GTCTC	2 cut(s)	152, 212
BfmI	CTRYAG	1 cut(s)	126
BisI	GCNGC	3 cut(s)	198, 625, 642
BlsI	GCNGC	3 cut(s)	199, 626, 643
Bme1390I	CCNGG	3 cut(s)	117, 369, 630
Bme18I	GGWCC	1 cut(s)	122
BmgBI	CACGTC	1 cut(s)	235
BmgT120I	GGNCC	1 cut(s)	122
BmiI	GGNNCC	1 cut(s)	211
BmrFI	CCNGG	3 cut(s)	117, 369, 630
BmrI	ACTGGG	1 cut(s)	498
BmsI	GCATC	4 cut(s)	232, 253, 364, 410
BmuI	ACTGGG	1 cut(s)	498
Bpu10I	CCTNAGC	1 cut(s)	645
BpuMI	CCSGG	1 cut(s)	630
BsaJI	CCNNGG	4 cut(s)	115, 164, 213, 628
Bsc4I	CCNNNNNNNGG	4 cut(s)	310, 386, 411, 464
Bse118I	RCCGGY	1 cut(s)	506
Bse1I	ACTGG	3 cut(s)	157, 461, 493
Bse3DI	GCAATG	1 cut(s)	640
BseBI	CCWGG	2 cut(s)	117, 369
BseDI	CCNNGG	4 cut(s)	115, 164, 213, 628
BseGI	GGATG	1 cut(s)	401
BseLI	CCNNNNNNNGG	4 cut(s)	310, 386, 411, 464
BseMI	GCAATG	1 cut(s)	640
BseMII	CTCAG	2 cut(s)	246, 264
BseNI	ACTGG	3 cut(s)	157, 461, 493
BseRI	GAGGAG	3 cut(s)	83, 230, 318
BseSI	GKGCMC	1 cut(s)	152
BseXI	GCAGC	3 cut(s)	184, 628, 636
BsiSI	CCGG	3 cut(s)	380, 507, 630
BslI	CCNNNNNNNGG	4 cut(s)	310, 386, 411, 464
BsmAI	GTCTC	2 cut(s)	152, 212
BsmBI	CGTCTC	1 cut(s)	212
Bsp1286I	GDGCHC	1 cut(s)	152
Bsp143I	GATC	2 cut(s)	72, 652
BspACI	CCGC	3 cut(s)	169, 399, 527
BspCNI	CTCAG	2 cut(s)	247, 265
BspHI	TCATGA	1 cut(s)	592
BspLI	GGNNCC	1 cut(s)	211
BspMAI	CTGCAG	1 cut(s)	130
BspPI	GGATC	1 cut(s)	647
BsrDI	GCAATG	1 cut(s)	640
BsrFI	RCCGGY	1 cut(s)	506
BsrI	ACTGG	3 cut(s)	157, 461, 493
BssAI	RCCGGY	1 cut(s)	506
BssECI	CCNNGG	4 cut(s)	115, 164, 213, 628
BssMI	GATC	2 cut(s)	72, 652
BssT1I	CCWWGG	1 cut(s)	164
Bst2UI	CCWGG	2 cut(s)	117, 369
Bst4CI	ACNGT	2 cut(s)	90, 99
Bst6I	CTCTTC	2 cut(s)	561, 609
BstC8I	GCNNGC	1 cut(s)	601
BstDEI	CTNAG	4 cut(s)	30, 255, 273, 645
BstF5I	GGATG	1 cut(s)	401
BstKTI	GATC	2 cut(s)	75, 655
BstMAI	GTCTC	2 cut(s)	152, 212
BstMBI	GATC	2 cut(s)	72, 652
BstMWI	GCNNNNNNNGC	3 cut(s)	251, 512, 630
BstNI	CCWGG	2 cut(s)	117, 369
BstSCI	CCNGG	3 cut(s)	115, 367, 628
BstSFI	CTRYAG	1 cut(s)	126
BstSLI	GKGCMC	1 cut(s)	152
BstV1I	GCAGC	3 cut(s)	184, 628, 636
BtgZI	GCGATG	1 cut(s)	387
BtrI	CACGTC	1 cut(s)	235
BtsCI	GGATG	1 cut(s)	401
BtsIMutI	CAGTG	1 cut(s)	150
Cac8I	GCNNGC	1 cut(s)	601
CaiI	CAGNNNCTG	2 cut(s)	103, 272
CciI	TCATGA	1 cut(s)	592
Cfr10I	RCCGGY	1 cut(s)	506
Cfr13I	GGNCC	1 cut(s)	122
Csp6I	GTAC	1 cut(s)	100
CspCI	CAANNNNNGTGG	1 cut(s)	36
CviAII	CATG	2 cut(s)	575, 593
CviQI	GTAC	1 cut(s)	100
DdeI	CTNAG	4 cut(s)	30, 255, 273, 645
DpnI	GATC	2 cut(s)	74, 654
DpnII	GATC	2 cut(s)	72, 652
Eam1104I	CTCTTC	2 cut(s)	561, 609
EarI	CTCTTC	2 cut(s)	561, 609
Eco130I	CCWWGG	1 cut(s)	164
Eco47I	GGWCC	1 cut(s)	122
Eco57I	CTGAAG	1 cut(s)	225
EcoRII	CCWGG	2 cut(s)	115, 367
EcoT14I	CCWWGG	1 cut(s)	164
ErhI	CCWWGG	1 cut(s)	164
Esp3I	CGTCTC	1 cut(s)	212
FaeI	CATG	2 cut(s)	578, 596
FaiI	YATR	4 cut(s)	365, 512, 576, 594
FatI	CATG	2 cut(s)	574, 592
Fnu4HI	GCNGC	3 cut(s)	198, 625, 642
FokI	GGATG	1 cut(s)	388
Fsp4HI	GCNGC	3 cut(s)	198, 625, 642
GluI	GCNGC	3 cut(s)	198, 625, 642
HapII	CCGG	3 cut(s)	380, 507, 630
Hin1II	CATG	2 cut(s)	578, 596
HinfI	GANTC	1 cut(s)	392
HpaII	CCGG	3 cut(s)	380, 507, 630
HphI	GGTGA	3 cut(s)	67, 167, 312
Hpy188I	TCNGA	1 cut(s)	136
Hpy188III	TCNNGA	2 cut(s)	203, 593
HpyAV	CCTTC	7 cut(s)	184, 200, 289, 409, 419, 533, 601
HpyCH4III	ACNGT	2 cut(s)	90, 99
HpyCH4IV	ACGT	2 cut(s)	234, 420
HpyCH4V	TGCA	3 cut(s)	128, 238, 266
HpyF10VI	GCNNNNNNNGC	3 cut(s)	251, 512, 630
HpyF3I	CTNAG	4 cut(s)	30, 255, 273, 645
HpySE526I	ACGT	2 cut(s)	234, 420
Hsp92II	CATG	2 cut(s)	578, 596
Kzo9I	GATC	2 cut(s)	72, 652
LmnI	GCTCC	5 cut(s)	61, 205, 209, 331, 382
Lsp1109I	GCAGC	3 cut(s)	184, 628, 636
LweI	GCATC	4 cut(s)	232, 253, 364, 410
MaeII	ACGT	2 cut(s)	234, 420
MaeIII	GTNAC	2 cut(s)	230, 484
MalI	GATC	2 cut(s)	74, 654
MboI	GATC	2 cut(s)	72, 652
MboII	GAAGA	4 cut(s)	449, 452, 578, 626
MhlI	GDGCHC	1 cut(s)	152
MmeI	TCCRAC	2 cut(s)	72, 83
MnlI	CCTC	8 cut(s)	61, 208, 339, 472, 515, 544, 562, 631
MslI	CAYNNNNRTG	1 cut(s)	117
MspI	CCGG	3 cut(s)	380, 507, 630
MspR9I	CCNGG	3 cut(s)	117, 369, 630
MvaI	CCWGG	2 cut(s)	117, 369
MwoI	GCNNNNNNNGC	3 cut(s)	251, 512, 630
NciI	CCSGG	1 cut(s)	630
NdeII	GATC	2 cut(s)	72, 652
NlaIII	CATG	2 cut(s)	578, 596
NlaIV	GGNNCC	1 cut(s)	211
NmeAIII	GCCGAG	1 cut(s)	238
NmuCI	GTSAC	2 cut(s)	230, 484
OliI	CACNNNNGTG	1 cut(s)	117
PagI	TCATGA	1 cut(s)	592
PfeI	GAWTC	1 cut(s)	392
PflMI	CCANNNNNTGG	2 cut(s)	310, 464
PkrI	GCNGC	3 cut(s)	199, 626, 643
Psp6I	CCWGG	2 cut(s)	115, 367
PspGI	CCWGG	2 cut(s)	115, 367
PspN4I	GGNNCC	1 cut(s)	211
PspPI	GGNCC	1 cut(s)	122
PstI	CTGCAG	1 cut(s)	130
PstNI	CAGNNNCTG	2 cut(s)	103, 272
RsaI	GTAC	1 cut(s)	101
RsaNI	GTAC	1 cut(s)	100
RseI	CAYNNNNRTG	1 cut(s)	117
SatI	GCNGC	3 cut(s)	198, 625, 642
Sau3AI	GATC	2 cut(s)	72, 652
Sau96I	GGNCC	1 cut(s)	122
ScrFI	CCNGG	3 cut(s)	117, 369, 630
SduI	GDGCHC	1 cut(s)	152
SfaNI	GCATC	4 cut(s)	232, 253, 364, 410
SfcI	CTRYAG	1 cut(s)	126
SinI	GGWCC	1 cut(s)	122
SmiMI	CAYNNNNRTG	1 cut(s)	117
SsiI	CCGC	3 cut(s)	169, 399, 527
StyD4I	CCNGG	3 cut(s)	115, 367, 628
StyI	CCWWGG	1 cut(s)	164
TaaI	ACNGT	2 cut(s)	90, 99
TaiI	ACGT	2 cut(s)	237, 423
TaqI	TCGA	2 cut(s)	612, 651
TfiI	GAWTC	1 cut(s)	392
TscAI	CASTG	1 cut(s)	157
TseFI	GTSAC	2 cut(s)	230, 484
TseI	GCWGC	3 cut(s)	197, 624, 641
Tsp45I	GTSAC	2 cut(s)	230, 484
TspDTI	ATGAA	3 cut(s)	552, 581, 609
TspRI	CASTG	1 cut(s)	157
Van91I	CCANNNNNTGG	2 cut(s)	310, 464
VpaK11BI	GGWCC	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.