Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001397

Physical Location & Seq

Genomic Coordinates Reverse (-)

23040284 .. 23044914

Gene Structure 4631 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g29820.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGTTCATTTCTCCAACTGGGGAGGAGATAAATAACAAAAAACAACTGGAGCAGTACCTAAAATCACATCCTGGTAACCCTGCATTGTCTGAGTTTGATTGGGGCACAGGAGAAACCCCTAGGAGATCATCCAGGATCATTGAAAAGGTCAAGTCGACTCCACCACCAGAGAATGAGCCTCCAAAGAAAAGAGGCCGGAAATCATCAGGTTCAAAGGACAATAAAGTGGATACTACTGATGCAGAAGATGGTATGAATGACACTGAAATGAAAGATGCAGAAGGTGAGAAACAGGTTGAGAATGGAGGGAAAGCACCTGAAGAAACTGACCAGATTAAGACCACGGATACCCAAGCTGAAGAAACTATCCCAGAGGATGGTAAGTATGAGACTCAGATTGATGCAACGGAAACTCAAGGTGAAGAGAAAGATGAAAAGTCAAACGCTGTTGCATCAGAGGACCAATCTACTGTGGTAACTTCGGCTACTGAGGTAAGTGAAAAGAACACAGAAAAGGTGTCTCAAGCTGAGGGAGAGGAAGGAAATGGTTGTACTGACAAGAATCAGGACAACACAGCTGCTGTGACCACTGAAGAAAATGGAGCACCATCTGTGGAGGAAGATATCAAAGGGAAACAAGATGTACCAGAGCTCGATGGGAAAAGTGGTGCCCCAGCTGAGGAGAAAGTGAAGATAAAGGATGGGGAGGTAGTTGAAAATGGTAAGGCTGGCCAAGTGGTTGAACCTGATGCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008327 GO:0036094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044444 GO:0044464 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBD

Protein Analysis

253

Amino Acids

27.16

Weight (kDa)

4.41

Isoelectric Point (pI)

45.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MBD	PF01429	2 - 41	7.6e-07	Methyl-CpG binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001397)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15790 AT3G15790 AT3G15790
fragaria_vesca	FvH4_1g03020 FvH4_1g03020 FvH4_1g03020 FvH4_1g03020 FvH4_6g29820 FvH4_6g29820 FvH4_6g29820 FvH4_6g29820 FvH4_6g29820 FvH4_6g29820
malus_domestica	MD00G1123000.v1.1 MD02G1029600.v1.1 MD15G1171000.v1.1 MD17G1210700.v1.1
prunus_persica	Prupe.3G086000_v2.0.a1 Prupe.7G245300_v2.0.a1
pyrus_communis	pycom02g02450 pycom09g14100 pycom15g15250 pycom17g21570
rosa_chinensis	RchiOBHm_Chr2g0088151 RchiOBHm_Chr2g0135641
rosa_laevigata	RLG00000015926 RLG00000019474
rosa_multiflora	Rmu_co8260895.1_g000001 Rmu_sc0002398.1_g000036 Rmu_sc0003275.1_g000050
rosa_roxburghii	Rroxscaffold_2G00109020 Rroxscaffold_2G00152920 Rroxscaffold_6G00395860 Rroxscaffold_7G00180210
rosa_rugosa	Rorug01G0481300 Rorug02G0325200
rosa_samantha	Rh2AG036300 Rh2AG376800 Rh2BG035500 Rh2BG076400 Rh2BG383100 Rh2CG036700 Rh2CG078600 Rh2CG362500 Rh2DG036000 Rh2DG399200 Rh5DG523600
rosa_wichuraiana	Rw1G013660 Rw2G002860 Rw2G030730 Rw4G021240 Rw4G021900 Rw7G017350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	668
AccB7I	CCANNNNNTGG	1 cut(s)	377
AccI	GTMKAC	1 cut(s)	155
AclWI	GGATC	1 cut(s)	143
AcoI	YGGCCR	1 cut(s)	730
AcuI	CTGAAG	3 cut(s)	339, 378, 612
AfaI	GTAC	3 cut(s)	56, 553, 645
AfiI	CCNNNNNNNGG	2 cut(s)	377, 679
AgsI	TTSAA	4 cut(s)	143, 213, 716, 743
AjnI	CCWGG	2 cut(s)	70, 131
AluBI	AGCT	5 cut(s)	356, 527, 578, 652, 677
AluI	AGCT	5 cut(s)	356, 527, 578, 652, 677
Alw21I	GWGCWC	2 cut(s)	607, 654
Alw26I	GTCTC	2 cut(s)	383, 525
AlwI	GGATC	1 cut(s)	143
AlwNI	CAGNNNCTG	1 cut(s)	581
AoxI	GGCC	2 cut(s)	193, 730
ApeKI	GCWGC	2 cut(s)	578, 752
AspA2I	CCTAGG	1 cut(s)	119
AspS9I	GGNCC	1 cut(s)	460
AsuHPI	GGTGA	2 cut(s)	296, 431
AvaII	GGWCC	1 cut(s)	460
AvrII	CCTAGG	1 cut(s)	119
BaeGI	GKGCMC	2 cut(s)	107, 673
BalI	TGGCCA	1 cut(s)	732
BanI	GGYRCC	1 cut(s)	668
BanII	GRGCYC	1 cut(s)	654
Bbv12I	GWGCWC	2 cut(s)	607, 654
BbvCI	CCTCAGC	2 cut(s)	528, 678
BbvI	GCAGC	2 cut(s)	565, 739
BccI	CCATC	5 cut(s)	242, 371, 616, 650, 695
BciT130I	CCWGG	2 cut(s)	72, 133
BciVI	GTATCC	2 cut(s)	223, 340
BcoDI	GTCTC	2 cut(s)	383, 525
BfaI	CTAG	1 cut(s)	120
BfuI	GTATCC	2 cut(s)	223, 340
BisI	GCNGC	2 cut(s)	579, 753
BlnI	CCTAGG	1 cut(s)	119
BlsI	GCNGC	2 cut(s)	580, 754
Bme1390I	CCNGG	2 cut(s)	72, 133
Bme18I	GGWCC	1 cut(s)	460
BmgT120I	GGNCC	1 cut(s)	460
BmiI	GGNNCC	1 cut(s)	670
BmrFI	CCNGG	2 cut(s)	72, 133
BmrI	ACTGGG	1 cut(s)	27
BmsI	GCATC	5 cut(s)	229, 265, 391, 461, 739
BmuI	ACTGGG	1 cut(s)	27
BpmI	CTGGAG	1 cut(s)	68
Bpu10I	CCTNAGC	2 cut(s)	528, 678
BpuEI	CTTGAG	2 cut(s)	399, 507
BsaJI	CCNNGG	2 cut(s)	119, 342
Bsc4I	CCNNNNNNNGG	2 cut(s)	377, 679
Bse1I	ACTGG	2 cut(s)	22, 51
BseBI	CCWGG	2 cut(s)	72, 133
BseDI	CCNNGG	2 cut(s)	119, 342
BseGI	GGATG	4 cut(s)	67, 128, 382, 706
BseLI	CCNNNNNNNGG	2 cut(s)	377, 679
BseMII	CTCAG	5 cut(s)	81, 407, 480, 519, 669
BseNI	ACTGG	2 cut(s)	22, 51
BseRI	GAGGAG	2 cut(s)	38, 695
BseSI	GKGCMC	2 cut(s)	107, 673
BseXI	GCAGC	2 cut(s)	565, 739
BseYI	CCCAGC	1 cut(s)	673
BshFI	GGCC	2 cut(s)	195, 732
BshNI	GGYRCC	1 cut(s)	668
BsiHKAI	GWGCWC	2 cut(s)	607, 654
BsiSI	CCGG	1 cut(s)	196
BslI	CCNNNNNNNGG	2 cut(s)	377, 679
BsmAI	GTCTC	2 cut(s)	383, 525
BsnI	GGCC	2 cut(s)	195, 732
Bsp1286I	GDGCHC	4 cut(s)	107, 607, 654, 673
Bsp143I	GATC	2 cut(s)	125, 135
BspANI	GGCC	2 cut(s)	195, 732
BspCNI	CTCAG	5 cut(s)	82, 406, 481, 520, 670
BspLI	GGNNCC	1 cut(s)	670
BspPI	GGATC	1 cut(s)	143
BspT107I	GGYRCC	1 cut(s)	668
BsrI	ACTGG	2 cut(s)	22, 51
BssECI	CCNNGG	2 cut(s)	119, 342
BssMI	GATC	2 cut(s)	125, 135
BssT1I	CCWWGG	1 cut(s)	119
Bst2UI	CCWGG	2 cut(s)	72, 133
Bst4CI	ACNGT	1 cut(s)	472
Bst6I	CTCTTC	1 cut(s)	417
BstC8I	GCNNGC	1 cut(s)	730
BstDEI	CTNAG	5 cut(s)	90, 393, 489, 528, 678
BstDSI	CCRYGG	1 cut(s)	342
BstEII	GGTNACC	1 cut(s)	74
BstF5I	GGATG	4 cut(s)	67, 128, 382, 706
BstKTI	GATC	2 cut(s)	128, 138
BstMAI	GTCTC	2 cut(s)	383, 525
BstMBI	GATC	2 cut(s)	125, 135
BstNI	CCWGG	2 cut(s)	72, 133
BstPI	GGTNACC	1 cut(s)	74
BstSCI	CCNGG	2 cut(s)	70, 131
BstSLI	GKGCMC	2 cut(s)	107, 673
BstV1I	GCAGC	2 cut(s)	565, 739
BsuI	GTATCC	2 cut(s)	223, 340
BsuRI	GGCC	2 cut(s)	195, 732
BtgI	CCRYGG	1 cut(s)	342
BtsCI	GGATG	4 cut(s)	67, 128, 382, 706
BtsIMutI	CAGTG	2 cut(s)	261, 588
Cac8I	GCNNGC	1 cut(s)	730
CaiI	CAGNNNCTG	1 cut(s)	581
Cfr13I	GGNCC	1 cut(s)	460
Csp6I	GTAC	3 cut(s)	55, 552, 644
CviQI	GTAC	3 cut(s)	55, 552, 644
DdeI	CTNAG	5 cut(s)	90, 393, 489, 528, 678
DpnI	GATC	2 cut(s)	127, 137
DpnII	GATC	2 cut(s)	125, 135
EaeI	YGGCCR	1 cut(s)	730
Eam1104I	CTCTTC	1 cut(s)	417
EarI	CTCTTC	1 cut(s)	417
Ecl136II	GAGCTC	1 cut(s)	652
Eco130I	CCWWGG	1 cut(s)	119
Eco24I	GRGCYC	1 cut(s)	654
Eco32I	GATATC	1 cut(s)	625
Eco47I	GGWCC	1 cut(s)	460
Eco53kI	GAGCTC	1 cut(s)	652
Eco57I	CTGAAG	3 cut(s)	339, 378, 612
Eco91I	GGTNACC	1 cut(s)	74
EcoICRI	GAGCTC	1 cut(s)	652
EcoO65I	GGTNACC	1 cut(s)	74
EcoRII	CCWGG	2 cut(s)	70, 131
EcoRV	GATATC	1 cut(s)	625
EcoT14I	CCWWGG	1 cut(s)	119
EcoT38I	GRGCYC	1 cut(s)	654
ErhI	CCWWGG	1 cut(s)	119
FaiI	YATR	2 cut(s)	254, 387
FblI	GTMKAC	1 cut(s)	155
Fnu4HI	GCNGC	2 cut(s)	579, 753
FokI	GGATG	4 cut(s)	54, 115, 389, 713
FriOI	GRGCYC	1 cut(s)	654
Fsp4HI	GCNGC	2 cut(s)	579, 753
FspBI	CTAG	1 cut(s)	120
GluI	GCNGC	2 cut(s)	579, 753
GsaI	CCCAGC	1 cut(s)	677
GsuI	CTGGAG	1 cut(s)	68
HaeIII	GGCC	2 cut(s)	195, 732
HapII	CCGG	1 cut(s)	196
HincII	GTYRAC	1 cut(s)	156
HindII	GTYRAC	1 cut(s)	156
HinfI	GANTC	3 cut(s)	157, 391, 562
HpaII	CCGG	1 cut(s)	196
HphI	GGTGA	2 cut(s)	296, 431
Hpy166II	GTNNAC	1 cut(s)	156
Hpy188I	TCNGA	3 cut(s)	91, 396, 457
Hpy188III	TCNNGA	1 cut(s)	566
Hpy8I	GTNNAC	1 cut(s)	156
HpyAV	CCTTC	2 cut(s)	275, 533
HpyCH4III	ACNGT	1 cut(s)	472
HpyCH4V	TGCA	5 cut(s)	83, 242, 278, 404, 452
HpyF3I	CTNAG	5 cut(s)	90, 393, 489, 528, 678
Kzo9I	GATC	2 cut(s)	125, 135
LmnI	GCTCC	2 cut(s)	49, 602
Lsp1109I	GCAGC	2 cut(s)	565, 739
LweI	GCATC	5 cut(s)	229, 265, 391, 461, 739
MaeI	CTAG	1 cut(s)	120
MaeIII	GTNAC	3 cut(s)	74, 475, 583
MalI	GATC	2 cut(s)	127, 137
MboI	GATC	2 cut(s)	125, 135
MboII	GAAGA	7 cut(s)	257, 332, 371, 434, 605, 632, 703
MhlI	GDGCHC	4 cut(s)	107, 607, 654, 673
MlsI	TGGCCA	1 cut(s)	732
MluNI	TGGCCA	1 cut(s)	732
MlyI	GAGTC	2 cut(s)	151, 385
MmeI	TCCRAC	1 cut(s)	38
Mox20I	TGGCCA	1 cut(s)	732
MscI	TGGCCA	1 cut(s)	732
MseI	TTAA	1 cut(s)	336
MslI	CAYNNNNRTG	1 cut(s)	266
Msp20I	TGGCCA	1 cut(s)	732
MspA1I	CMGCKG	2 cut(s)	578, 677
MspI	CCGG	1 cut(s)	196
MspR9I	CCNGG	2 cut(s)	72, 133
MvaI	CCWGG	2 cut(s)	72, 133
NdeII	GATC	2 cut(s)	125, 135
NlaIV	GGNNCC	1 cut(s)	670
NmuCI	GTSAC	1 cut(s)	583
PfeI	GAWTC	1 cut(s)	562
PflMI	CCANNNNNTGG	1 cut(s)	377
PfoI	TCCNGGA	1 cut(s)	131
PkrI	GCNGC	2 cut(s)	580, 754
PleI	GAGTC	2 cut(s)	151, 385
PpsI	GAGTC	2 cut(s)	151, 385
Psp124BI	GAGCTC	1 cut(s)	654
Psp6I	CCWGG	2 cut(s)	70, 131
PspEI	GGTNACC	1 cut(s)	74
PspFI	CCCAGC	1 cut(s)	673
PspGI	CCWGG	2 cut(s)	70, 131
PspN4I	GGNNCC	1 cut(s)	670
PspPI	GGNCC	1 cut(s)	460
PstNI	CAGNNNCTG	1 cut(s)	581
PvuII	CAGCTG	2 cut(s)	578, 677
RsaI	GTAC	3 cut(s)	56, 553, 645
RsaNI	GTAC	3 cut(s)	55, 552, 644
RseI	CAYNNNNRTG	1 cut(s)	266
SacI	GAGCTC	1 cut(s)	654
SalI	GTCGAC	1 cut(s)	154
SaqAI	TTAA	1 cut(s)	336
SatI	GCNGC	2 cut(s)	579, 753
Sau3AI	GATC	2 cut(s)	125, 135
Sau96I	GGNCC	1 cut(s)	460
SchI	GAGTC	2 cut(s)	151, 385
ScrFI	CCNGG	2 cut(s)	72, 133
SduI	GDGCHC	4 cut(s)	107, 607, 654, 673
SfaNI	GCATC	5 cut(s)	229, 265, 391, 461, 739
SinI	GGWCC	1 cut(s)	460
SmiMI	CAYNNNNRTG	1 cut(s)	266
SmlI	CTYRAG	2 cut(s)	414, 522
SmoI	CTYRAG	2 cut(s)	414, 522
SspMI	CTAG	1 cut(s)	120
SstI	GAGCTC	1 cut(s)	654
StyD4I	CCNGG	2 cut(s)	70, 131
StyI	CCWWGG	1 cut(s)	119
TaaI	ACNGT	1 cut(s)	472
TaqI	TCGA	2 cut(s)	155, 654
TatI	WGTACW	1 cut(s)	551
TfiI	GAWTC	1 cut(s)	562
Tru1I	TTAA	1 cut(s)	336
Tru9I	TTAA	1 cut(s)	336
TscAI	CASTG	2 cut(s)	268, 595
TseFI	GTSAC	1 cut(s)	583
TseI	GCWGC	2 cut(s)	578, 752
Tsp45I	GTSAC	1 cut(s)	583
TspDTI	ATGAA	3 cut(s)	269, 284, 447
TspGWI	ACGGA	2 cut(s)	359, 422
TspRI	CASTG	2 cut(s)	268, 595
Van91I	CCANNNNNTGG	1 cut(s)	377
VpaK11BI	GGWCC	1 cut(s)	460
XmaJI	CCTAGG	1 cut(s)	119
XmiI	GTMKAC	1 cut(s)	155
XspI	CTAG	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.