Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001397

Physical Location & Seq

Genomic Coordinates Reverse (-)

39899914 .. 39900321

Gene Structure 408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0325200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGTTGCTTTACAAGCAGAAGCCCAAGGAAACCAAAGGCGACAATATGATGCTGATCAGCATCAGTGTGGTGGGCAGTACTGGCCCGTTCCGGTTCGTCGTGAATAAGAAGGAACTAGTCGCTGCGGTCCTCCAAAGGGCCTTGAAGTCCTACGCGCGCTTAGGTCGGCTACCAGTTCTTGGCTCCGATCTCAAAGAGTTCGTCCTTTACTGCTCCACTGCCGCCGGCGTAGATGCTCTGAGTCCTTGGGAGACAATTGGATCCCGAGGGGCAGTTAATAACTTCATTCTATGCAAGAAGCCACCTACGACACAGCCACTACCATTGGCTGCAGCTTCTGATCAGAAGAAGAGTCTGATCAAGGGGTGGATCAATAAGTCCTTCAATCTCAACATCTATTCCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008327 GO:0036094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044444 GO:0044464 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBD

Protein Analysis

135

Amino Acids

14.81

Weight (kDa)

9.92

Isoelectric Point (pI)

28.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7054	PF23156	15 - 98	1.3e-19	Domain of unknown function (DUF7054)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001397)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15790 AT3G15790 AT3G15790
fragaria_vesca	FvH4_1g03020 FvH4_1g03020 FvH4_1g03020 FvH4_1g03020 FvH4_6g29820 FvH4_6g29820 FvH4_6g29820 FvH4_6g29820 FvH4_6g29820 FvH4_6g29820
malus_domestica	MD00G1123000.v1.1 MD02G1029600.v1.1 MD15G1171000.v1.1 MD17G1210700.v1.1
prunus_persica	Prupe.3G086000_v2.0.a1 Prupe.7G245300_v2.0.a1
pyrus_communis	pycom02g02450 pycom09g14100 pycom15g15250 pycom17g21570
rosa_chinensis	RchiOBHm_Chr2g0088151 RchiOBHm_Chr2g0135641
rosa_laevigata	RLG00000015926 RLG00000019474
rosa_multiflora	Rmu_co8260895.1_g000001 Rmu_sc0002398.1_g000036 Rmu_sc0003275.1_g000050
rosa_roxburghii	Rroxscaffold_2G00109020 Rroxscaffold_2G00152920 Rroxscaffold_6G00395860 Rroxscaffold_7G00180210
rosa_rugosa	Rorug01G0481300 Rorug02G0325200
rosa_samantha	Rh2AG036300 Rh2AG376800 Rh2BG035500 Rh2BG076400 Rh2BG383100 Rh2CG036700 Rh2CG078600 Rh2CG362500 Rh2DG036000 Rh2DG399200 Rh5DG523600
rosa_wichuraiana	Rw1G013660 Rw2G002860 Rw2G030730 Rw4G021240 Rw4G021900 Rw7G017350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	179
AccII	CGCG	2 cut(s)	155, 157
AciI	CCGC	2 cut(s)	125, 222
AclWI	GGATC	3 cut(s)	255, 268, 377
AfaI	GTAC	1 cut(s)	79
AfiI	CCNNNNNNNGG	2 cut(s)	136, 179
AgsI	TTSAA	2 cut(s)	145, 385
AhlI	ACTAGT	1 cut(s)	115
AluBI	AGCT	1 cut(s)	335
AluI	AGCT	1 cut(s)	335
Alw26I	GTCTC	1 cut(s)	245
AlwI	GGATC	3 cut(s)	255, 268, 377
AlwNI	CAGNNNCTG	1 cut(s)	338
Ama87I	CYCGRG	1 cut(s)	264
AoxI	GGCC	2 cut(s)	82, 138
ApeKI	GCWGC	3 cut(s)	122, 329, 332
ArsI	GACNNNNNNTTYG	2 cut(s)	186, 218
AspLEI	GCGC	2 cut(s)	157, 159
AspS9I	GGNCC	3 cut(s)	83, 127, 138
AvaI	CYCGRG	1 cut(s)	264
AvaII	GGWCC	1 cut(s)	127
BamHI	GGATCC	1 cut(s)	260
BbvI	GCAGC	3 cut(s)	109, 316, 344
BclI	TGATCA	3 cut(s)	54, 340, 357
BcoDI	GTCTC	1 cut(s)	245
BcuI	ACTAGT	1 cut(s)	115
BfaI	CTAG	1 cut(s)	116
BfmI	CTRYAG	1 cut(s)	330
BisI	GCNGC	4 cut(s)	123, 222, 330, 333
BlsI	GCNGC	4 cut(s)	124, 223, 331, 334
BmcAI	AGTACT	1 cut(s)	79
Bme18I	GGWCC	1 cut(s)	127
BmeT110I	CYCGRG	1 cut(s)	264
BmgT120I	GGNCC	3 cut(s)	83, 127, 138
BmiI	GGNNCC	2 cut(s)	184, 262
BmsI	GCATC	3 cut(s)	39, 69, 223
Bpu10I	CCTNAGC	1 cut(s)	160
BsaBI	GATNNNNATC	2 cut(s)	53, 59
BsaJI	CCNNGG	3 cut(s)	24, 245, 265
BsaWI	WCCGGW	1 cut(s)	90
Bsc4I	CCNNNNNNNGG	2 cut(s)	136, 179
Bse118I	RCCGGY	1 cut(s)	224
Bse1I	ACTGG	2 cut(s)	85, 173
Bse8I	GATNNNNATC	2 cut(s)	53, 59
BseDI	CCNNGG	3 cut(s)	24, 245, 265
BseJI	GATNNNNATC	2 cut(s)	53, 59
BseLI	CCNNNNNNNGG	2 cut(s)	136, 179
BseMII	CTCAG	1 cut(s)	230
BseNI	ACTGG	2 cut(s)	85, 173
BsePI	GCGCGC	1 cut(s)	155
BseXI	GCAGC	3 cut(s)	109, 316, 344
Bsh1236I	CGCG	2 cut(s)	155, 157
BshFI	GGCC	2 cut(s)	84, 140
BsiHKCI	CYCGRG	1 cut(s)	264
BsiSI	CCGG	2 cut(s)	91, 225
BslI	CCNNNNNNNGG	2 cut(s)	136, 179
BsmAI	GTCTC	1 cut(s)	245
BsnI	GGCC	2 cut(s)	84, 140
BsoBI	CYCGRG	1 cut(s)	264
Bsp143I	GATC	6 cut(s)	54, 187, 260, 340, 357, 369
BspACI	CCGC	2 cut(s)	125, 222
BspANI	GGCC	2 cut(s)	84, 140
BspCNI	CTCAG	1 cut(s)	231
BspFNI	CGCG	2 cut(s)	155, 157
BspLI	GGNNCC	2 cut(s)	184, 262
BspMAI	CTGCAG	1 cut(s)	334
BspPI	GGATC	3 cut(s)	255, 268, 377
BsrFI	RCCGGY	1 cut(s)	224
BsrI	ACTGG	2 cut(s)	85, 173
BssAI	RCCGGY	1 cut(s)	224
BssECI	CCNNGG	3 cut(s)	24, 245, 265
BssHII	GCGCGC	1 cut(s)	155
BssMI	GATC	6 cut(s)	54, 187, 260, 340, 357, 369
BssT1I	CCWWGG	2 cut(s)	24, 245
Bst6I	CTCTTC	1 cut(s)	344
BstC8I	GCNNGC	2 cut(s)	157, 226
BstDEI	CTNAG	2 cut(s)	160, 239
BstFNI	CGCG	2 cut(s)	155, 157
BstHHI	GCGC	2 cut(s)	157, 159
BstKTI	GATC	6 cut(s)	57, 190, 263, 343, 360, 372
BstMAI	GTCTC	1 cut(s)	245
BstMBI	GATC	6 cut(s)	54, 187, 260, 340, 357, 369
BstMWI	GCNNNNNNNGC	2 cut(s)	13, 81
BstSFI	CTRYAG	1 cut(s)	330
BstUI	CGCG	2 cut(s)	155, 157
BstV1I	GCAGC	3 cut(s)	109, 316, 344
BstX2I	RGATCY	1 cut(s)	260
BstYI	RGATCY	1 cut(s)	260
BsuRI	GGCC	2 cut(s)	84, 140
BtsI	GCAGTG	1 cut(s)	216
BtsIMutI	CAGTG	2 cut(s)	70, 216
Cac8I	GCNNGC	2 cut(s)	157, 226
CaiI	CAGNNNCTG	1 cut(s)	338
CfoI	GCGC	2 cut(s)	157, 159
Cfr10I	RCCGGY	1 cut(s)	224
Cfr13I	GGNCC	3 cut(s)	83, 127, 138
Csp6I	GTAC	1 cut(s)	78
CspCI	CAANNNNNGTGG	2 cut(s)	306, 341
CviJI	RGCY	9 cut(s)	22, 84, 140, 169, 183, 301, 316, 329, 335
CviKI_1	RGCY	9 cut(s)	22, 84, 140, 169, 183, 301, 316, 329, 335
CviQI	GTAC	1 cut(s)	78
DdeI	CTNAG	2 cut(s)	160, 239
DpnI	GATC	6 cut(s)	56, 189, 262, 342, 359, 371
DpnII	GATC	6 cut(s)	54, 187, 260, 340, 357, 369
Eam1104I	CTCTTC	1 cut(s)	344
EarI	CTCTTC	1 cut(s)	344
Eco130I	CCWWGG	2 cut(s)	24, 245
Eco47I	GGWCC	1 cut(s)	127
Eco88I	CYCGRG	1 cut(s)	264
EcoO109I	RGGNCCY	1 cut(s)	138
EcoT14I	CCWWGG	2 cut(s)	24, 245
ErhI	CCWWGG	2 cut(s)	24, 245
FaiI	YATR	2 cut(s)	47, 292
FbaI	TGATCA	3 cut(s)	54, 340, 357
Fnu4HI	GCNGC	4 cut(s)	123, 222, 330, 333
Fsp4HI	GCNGC	4 cut(s)	123, 222, 330, 333
FspBI	CTAG	1 cut(s)	116
GlaI	GCGC	2 cut(s)	156, 158
GluI	GCNGC	4 cut(s)	123, 222, 330, 333
HaeIII	GGCC	2 cut(s)	84, 140
HapII	CCGG	2 cut(s)	91, 225
HhaI	GCGC	2 cut(s)	157, 159
Hin6I	GCGC	2 cut(s)	155, 157
HinP1I	GCGC	2 cut(s)	155, 157
HinfI	GANTC	2 cut(s)	241, 352
HpaII	CCGG	2 cut(s)	91, 225
Hpy188I	TCNGA	5 cut(s)	187, 240, 340, 345, 357
Hpy188III	TCNNGA	2 cut(s)	100, 264
Hpy99I	CGWCG	1 cut(s)	101
HpyAV	CCTTC	2 cut(s)	103, 391
HpyCH4V	TGCA	2 cut(s)	294, 332
HpyF10VI	GCNNNNNNNGC	2 cut(s)	13, 81
HpyF3I	CTNAG	2 cut(s)	160, 239
HspAI	GCGC	2 cut(s)	155, 157
KroI	GCCGGC	1 cut(s)	224
KroNI	GCCGGC	1 cut(s)	226
Ksp22I	TGATCA	3 cut(s)	54, 340, 357
Kzo9I	GATC	6 cut(s)	54, 187, 260, 340, 357, 369
LmnI	GCTCC	2 cut(s)	188, 218
LpnPI	CCDG	4 cut(s)	66, 104, 186, 238
Lsp1109I	GCAGC	3 cut(s)	109, 316, 344
LweI	GCATC	3 cut(s)	39, 69, 223
MaeI	CTAG	1 cut(s)	116
MalI	GATC	6 cut(s)	56, 189, 262, 342, 359, 371
MboI	GATC	6 cut(s)	54, 187, 260, 340, 357, 369
MboII	GAAGA	2 cut(s)	358, 361
MfeI	CAATTG	1 cut(s)	255
MflI	RGATCY	1 cut(s)	260
MluCI	AATT	1 cut(s)	255
MlyI	GAGTC	2 cut(s)	250, 361
MnlI	CCTC	2 cut(s)	140, 260
MreI	CGCCGGCG	1 cut(s)	224
MroNI	GCCGGC	1 cut(s)	224
MseI	TTAA	1 cut(s)	276
MslI	CAYNNNNRTG	1 cut(s)	65
MspI	CCGG	2 cut(s)	91, 225
MunI	CAATTG	1 cut(s)	255
MvnI	CGCG	2 cut(s)	155, 157
MwoI	GCNNNNNNNGC	2 cut(s)	13, 81
NaeI	GCCGGC	1 cut(s)	226
NdeII	GATC	6 cut(s)	54, 187, 260, 340, 357, 369
NgoMIV	GCCGGC	1 cut(s)	224
NlaIV	GGNNCC	2 cut(s)	184, 262
PauI	GCGCGC	1 cut(s)	155
PdiI	GCCGGC	1 cut(s)	226
PflMI	CCANNNNNTGG	1 cut(s)	179
PkrI	GCNGC	4 cut(s)	124, 223, 331, 334
PleI	GAGTC	2 cut(s)	249, 360
PpsI	GAGTC	2 cut(s)	249, 360
PspN4I	GGNNCC	2 cut(s)	184, 262
PspPI	GGNCC	3 cut(s)	83, 127, 138
PstI	CTGCAG	1 cut(s)	334
PstNI	CAGNNNCTG	1 cut(s)	338
PsuI	RGATCY	1 cut(s)	260
PteI	GCGCGC	1 cut(s)	155
RsaI	GTAC	1 cut(s)	79
RsaNI	GTAC	1 cut(s)	78
RseI	CAYNNNNRTG	1 cut(s)	65
SaqAI	TTAA	1 cut(s)	276
SatI	GCNGC	4 cut(s)	123, 222, 330, 333
Sau3AI	GATC	6 cut(s)	54, 187, 260, 340, 357, 369
Sau96I	GGNCC	3 cut(s)	83, 127, 138
ScaI	AGTACT	1 cut(s)	79
SchI	GAGTC	2 cut(s)	250, 361
SetI	ASST	3 cut(s)	166, 307, 337
SfaNI	GCATC	3 cut(s)	39, 69, 223
SfcI	CTRYAG	1 cut(s)	330
SgrAI	CRCCGGYG	1 cut(s)	224
SinI	GGWCC	1 cut(s)	127
SmiMI	CAYNNNNRTG	1 cut(s)	65
SpeI	ACTAGT	1 cut(s)	115
Sse9I	AATT	1 cut(s)	255
SsiI	CCGC	2 cut(s)	125, 222
SspMI	CTAG	1 cut(s)	116
StyI	CCWWGG	2 cut(s)	24, 245
TasI	AATT	1 cut(s)	255
TatI	WGTACW	1 cut(s)	77
TauI	GCSGC	1 cut(s)	224
Tru1I	TTAA	1 cut(s)	276
Tru9I	TTAA	1 cut(s)	276
TscAI	CASTG	2 cut(s)	70, 223
TseI	GCWGC	3 cut(s)	122, 329, 332
TspDTI	ATGAA	1 cut(s)	274
TspRI	CASTG	2 cut(s)	70, 223
Van91I	CCANNNNNTGG	1 cut(s)	179
VpaK11BI	GGWCC	1 cut(s)	127
XspI	CTAG	1 cut(s)	116
ZrmI	AGTACT	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.