Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001397

Physical Location & Seq

Genomic Coordinates Forward (+)

33118624 .. 33123669

Gene Structure 5046 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00109020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGAGAACAAAGTGGATGAGGTTGTTGCTGTTGAGCTCCTGCTCCTCCTGCTTGGAAGAAGAAGTGGCATGCCCTCAGGTCAAATACCTTTTATGCAAGCATCACAAACTGAGTTAAATTGGTTTGAAATAAATAATATTTTACCCAAGAAGGGAGTTACACCAAGGAAAAATGATGTCACATTCATTTCTCCAACTGGGGAGGAGATTAACAATAAAAAACAACTGGAGCAGTACCTAAAATCACATCCTGGTAACCCTGCATTGTCAGAGTTTGATTGGAGCACAGGTGAAACCCCTAGGAGATCATCCAGGATCAGTGAAAAGGTCAAGTCGACTCCCCCACCAGAGAATGAGCCTCCAAAGAAAAGAGGCCGGAAATCATCAGGTTCAAAGGACAATAAAGTGGAGACTACTGATGCAGAACATGGTACGAATGACACTGAAATGAAAGATGCAGAGGTAGCTGAGAAGAAAGATGGAGAAGCTGAGAAACAGGTTGAGAATGGAGGAAAAGCACCAGAAGAAACTGACCAAATTAAGACCACAGATACCAAAACTGAGGAAACTATGCCAGAGGATGGTAAGGAGACTCAGACTGATGTTATGGAAACTCAAGGTGGAGAGAAAGATGAAAAGTCAAACAGTGTTGCATCAGAGGAACAACCTGCTGGAGTAGCTTTGGCTACTGAGGTAACTGAAAAGGTGCCACAAGCTGAGGGAGAGGAAGGAAATGGCTCTACTGACAAGAAACAGGACAACACAACAGCTGCTGTGAACATTGAAGAAAATGGAGCACCAGAGAAAGAGAATCTGAAGGGAATAGCACCATCTGTGGAGGCAGAGATCAAAGGGAAACAAGATGTACCAGAGGTCGATGGGAAAAGCGATGCTCCAGCTGAGGAGAAAGTTAAGACAAAGGATGGGGAGGTAGTTGAAAATGGTAAGGTTGACCAAGTGGTTAAACCTGATGCTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008327 GO:0036094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044444 GO:0044464 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBD

Protein Analysis

326

Amino Acids

35.41

Weight (kDa)

4.67

Isoelectric Point (pI)

47.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MBD	PF01429	49 - 101	4.6e-10	Methyl-CpG binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001397)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15790 AT3G15790 AT3G15790
fragaria_vesca	FvH4_1g03020 FvH4_1g03020 FvH4_1g03020 FvH4_1g03020 FvH4_6g29820 FvH4_6g29820 FvH4_6g29820 FvH4_6g29820 FvH4_6g29820 FvH4_6g29820
malus_domestica	MD00G1123000.v1.1 MD02G1029600.v1.1 MD15G1171000.v1.1 MD17G1210700.v1.1
prunus_persica	Prupe.3G086000_v2.0.a1 Prupe.7G245300_v2.0.a1
pyrus_communis	pycom02g02450 pycom09g14100 pycom15g15250 pycom17g21570
rosa_chinensis	RchiOBHm_Chr2g0088151 RchiOBHm_Chr2g0135641
rosa_laevigata	RLG00000015926 RLG00000019474
rosa_multiflora	Rmu_co8260895.1_g000001 Rmu_sc0002398.1_g000036 Rmu_sc0003275.1_g000050
rosa_roxburghii	Rroxscaffold_2G00109020 Rroxscaffold_2G00152920 Rroxscaffold_6G00395860 Rroxscaffold_7G00180210
rosa_rugosa	Rorug01G0481300 Rorug02G0325200
rosa_samantha	Rh2AG036300 Rh2AG376800 Rh2BG035500 Rh2BG076400 Rh2BG383100 Rh2CG036700 Rh2CG078600 Rh2CG362500 Rh2DG036000 Rh2DG399200 Rh5DG523600
rosa_wichuraiana	Rw1G013660 Rw2G002860 Rw2G030730 Rw4G021240 Rw4G021900 Rw7G017350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	676
AccB1I	GGYRCC	1 cut(s)	706
AccB7I	CCANNNNNTGG	1 cut(s)	581
AccI	GTMKAC	1 cut(s)	335
AclWI	GGATC	1 cut(s)	323
AcuI	CTGAAG	1 cut(s)	836
AfaI	GTAC	3 cut(s)	236, 433, 867
AfiI	CCNNNNNNNGG	2 cut(s)	152, 581
AgsI	TTSAA	4 cut(s)	128, 393, 785, 938
AjnI	CCWGG	2 cut(s)	250, 311
AluBI	AGCT	7 cut(s)	37, 467, 488, 680, 716, 770, 899
AluI	AGCT	7 cut(s)	37, 467, 488, 680, 716, 770, 899
Alw21I	GWGCWC	3 cut(s)	39, 287, 799
Alw26I	GTCTC	2 cut(s)	404, 584
AlwI	GGATC	1 cut(s)	323
AlwNI	CAGNNNCTG	1 cut(s)	773
AoxI	GGCC	1 cut(s)	373
ApeKI	GCWGC	2 cut(s)	770, 974
AspA2I	CCTAGG	1 cut(s)	299
AsuHPI	GGTGA	1 cut(s)	302
AvrII	CCTAGG	1 cut(s)	299
AxyI	CCTNAGG	1 cut(s)	76
BanI	GGYRCC	1 cut(s)	706
BanII	GRGCYC	1 cut(s)	39
Bbv12I	GWGCWC	3 cut(s)	39, 287, 799
BbvCI	CCTCAGC	2 cut(s)	717, 900
BbvI	GCAGC	2 cut(s)	757, 961
BccI	CCATC	5 cut(s)	473, 575, 838, 872, 917
BciT130I	CCWGG	2 cut(s)	252, 313
BcoDI	GTCTC	2 cut(s)	404, 584
BfaI	CTAG	1 cut(s)	300
BfuAI	ACCTGC	1 cut(s)	676
BisI	GCNGC	2 cut(s)	771, 975
BlnI	CCTAGG	1 cut(s)	299
BlsI	GCNGC	2 cut(s)	772, 976
Bme1390I	CCNGG	2 cut(s)	252, 313
BmiI	GGNNCC	1 cut(s)	708
BmrFI	CCNGG	2 cut(s)	252, 313
BmrI	ACTGGG	1 cut(s)	207
BmsI	GCATC	6 cut(s)	110, 409, 445, 662, 880, 961
BmuI	ACTGGG	1 cut(s)	207
BpmI	CTGGAG	3 cut(s)	248, 693, 879
Bpu10I	CCTNAGC	2 cut(s)	717, 900
BpuEI	CTTGAG	1 cut(s)	600
BsaJI	CCNNGG	2 cut(s)	164, 299
BsaXI	ACNNNNNCTCC	2 cut(s)	274, 304
Bsc4I	CCNNNNNNNGG	2 cut(s)	152, 581
Bse1I	ACTGG	2 cut(s)	202, 231
Bse21I	CCTNAGG	1 cut(s)	76
BseBI	CCWGG	2 cut(s)	252, 313
BseDI	CCNNGG	2 cut(s)	164, 299
BseGI	GGATG	5 cut(s)	22, 247, 308, 586, 928
BseLI	CCNNNNNNNGG	2 cut(s)	152, 581
BseMII	CTCAG	9 cut(s)	90, 102, 459, 480, 552, 608, 681, 708, 891
BseNI	ACTGG	2 cut(s)	202, 231
BseRI	GAGGAG	3 cut(s)	35, 218, 917
BseXI	GCAGC	2 cut(s)	757, 961
BshFI	GGCC	1 cut(s)	375
BshNI	GGYRCC	1 cut(s)	706
BsiHKAI	GWGCWC	3 cut(s)	39, 287, 799
BsiSI	CCGG	1 cut(s)	376
BslI	CCNNNNNNNGG	2 cut(s)	152, 581
BsmAI	GTCTC	2 cut(s)	404, 584
BsnI	GGCC	1 cut(s)	375
Bsp1286I	GDGCHC	3 cut(s)	39, 287, 799
Bsp143I	GATC	3 cut(s)	305, 315, 846
BspANI	GGCC	1 cut(s)	375
BspCNI	CTCAG	9 cut(s)	89, 103, 460, 481, 553, 607, 682, 709, 892
BspLI	GGNNCC	1 cut(s)	708
BspMI	ACCTGC	1 cut(s)	676
BspPI	GGATC	1 cut(s)	323
BspT107I	GGYRCC	1 cut(s)	706
BsrI	ACTGG	2 cut(s)	202, 231
BssECI	CCNNGG	2 cut(s)	164, 299
BssMI	GATC	3 cut(s)	305, 315, 846
BssT1I	CCWWGG	2 cut(s)	164, 299
Bst2UI	CCWGG	2 cut(s)	252, 313
Bst4CI	ACNGT	1 cut(s)	647
BstC8I	GCNNGC	2 cut(s)	71, 99
BstDEI	CTNAG	9 cut(s)	76, 111, 468, 489, 561, 594, 690, 717, 900
BstEII	GGTNACC	1 cut(s)	254
BstF5I	GGATG	5 cut(s)	22, 247, 308, 586, 928
BstKTI	GATC	3 cut(s)	308, 318, 849
BstMAI	GTCTC	2 cut(s)	404, 584
BstMBI	GATC	3 cut(s)	305, 315, 846
BstMWI	GCNNNNNNNGC	3 cut(s)	49, 464, 677
BstNI	CCWGG	2 cut(s)	252, 313
BstNSI	RCATGY	1 cut(s)	73
BstPI	GGTNACC	1 cut(s)	254
BstSCI	CCNGG	2 cut(s)	250, 311
BstV1I	GCAGC	2 cut(s)	757, 961
Bsu36I	CCTNAGG	1 cut(s)	76
BsuRI	GGCC	1 cut(s)	375
BtgZI	GCGATG	1 cut(s)	903
BtsCI	GGATG	5 cut(s)	22, 247, 308, 586, 928
BtsIMutI	CAGTG	3 cut(s)	325, 441, 652
BveI	ACCTGC	1 cut(s)	676
Cac8I	GCNNGC	2 cut(s)	71, 99
CaiI	CAGNNNCTG	1 cut(s)	773
Csp6I	GTAC	3 cut(s)	235, 432, 866
CviAII	CATG	2 cut(s)	70, 428
CviQI	GTAC	3 cut(s)	235, 432, 866
DdeI	CTNAG	9 cut(s)	76, 111, 468, 489, 561, 594, 690, 717, 900
DpnI	GATC	3 cut(s)	307, 317, 848
DpnII	GATC	3 cut(s)	305, 315, 846
Ecl136II	GAGCTC	1 cut(s)	37
Eco130I	CCWWGG	2 cut(s)	164, 299
Eco24I	GRGCYC	1 cut(s)	39
Eco53kI	GAGCTC	1 cut(s)	37
Eco57I	CTGAAG	1 cut(s)	836
Eco81I	CCTNAGG	1 cut(s)	76
Eco91I	GGTNACC	1 cut(s)	254
EcoICRI	GAGCTC	1 cut(s)	37
EcoO65I	GGTNACC	1 cut(s)	254
EcoRII	CCWGG	2 cut(s)	250, 311
EcoT14I	CCWWGG	2 cut(s)	164, 299
EcoT38I	GRGCYC	1 cut(s)	39
ErhI	CCWWGG	2 cut(s)	164, 299
FaeI	CATG	2 cut(s)	73, 431
FaiI	YATR	6 cut(s)	71, 95, 429, 572, 608, 979
FatI	CATG	2 cut(s)	69, 427
FblI	GTMKAC	1 cut(s)	335
Fnu4HI	GCNGC	2 cut(s)	771, 975
FokI	GGATG	5 cut(s)	29, 234, 295, 593, 935
FriOI	GRGCYC	1 cut(s)	39
Fsp4HI	GCNGC	2 cut(s)	771, 975
FspBI	CTAG	1 cut(s)	300
GluI	GCNGC	2 cut(s)	771, 975
GsuI	CTGGAG	3 cut(s)	248, 693, 879
HaeIII	GGCC	1 cut(s)	375
HapII	CCGG	1 cut(s)	376
Hin1II	CATG	2 cut(s)	73, 431
HincII	GTYRAC	2 cut(s)	336, 952
HindII	GTYRAC	2 cut(s)	336, 952
HinfI	GANTC	3 cut(s)	337, 592, 811
HpaII	CCGG	1 cut(s)	376
HphI	GGTGA	1 cut(s)	302
Hpy166II	GTNNAC	3 cut(s)	336, 778, 952
Hpy188I	TCNGA	4 cut(s)	271, 597, 658, 816
Hpy8I	GTNNAC	3 cut(s)	336, 778, 952
HpyAV	CCTTC	3 cut(s)	145, 722, 811
HpyCH4III	ACNGT	1 cut(s)	647
HpyCH4V	TGCA	6 cut(s)	97, 263, 422, 458, 653, 977
HpyF10VI	GCNNNNNNNGC	3 cut(s)	49, 464, 677
HpyF3I	CTNAG	9 cut(s)	76, 111, 468, 489, 561, 594, 690, 717, 900
Hsp92II	CATG	2 cut(s)	73, 431
Kzo9I	GATC	3 cut(s)	305, 315, 846
LmnI	GCTCC	6 cut(s)	42, 48, 229, 282, 794, 898
Lsp1109I	GCAGC	2 cut(s)	757, 961
LweI	GCATC	6 cut(s)	110, 409, 445, 662, 880, 961
MaeI	CTAG	1 cut(s)	300
MaeIII	GTNAC	4 cut(s)	157, 178, 254, 694
MalI	GATC	3 cut(s)	307, 317, 848
MboI	GATC	3 cut(s)	305, 315, 846
MboII	GAAGA	5 cut(s)	69, 72, 484, 536, 797
MhlI	GDGCHC	3 cut(s)	39, 287, 799
MluCI	AATT	2 cut(s)	118, 537
MlyI	GAGTC	2 cut(s)	331, 586
MmeI	TCCRAC	1 cut(s)	218
MseI	TTAA	5 cut(s)	116, 210, 540, 912, 963
MslI	CAYNNNNRTG	1 cut(s)	446
MspA1I	CMGCKG	2 cut(s)	770, 899
MspI	CCGG	1 cut(s)	376
MspR9I	CCNGG	2 cut(s)	252, 313
MvaI	CCWGG	2 cut(s)	252, 313
MwoI	GCNNNNNNNGC	3 cut(s)	49, 464, 677
NdeII	GATC	3 cut(s)	305, 315, 846
NlaIII	CATG	2 cut(s)	73, 431
NlaIV	GGNNCC	1 cut(s)	708
NmuCI	GTSAC	1 cut(s)	178
NspI	RCATGY	1 cut(s)	73
PaeI	GCATGC	1 cut(s)	73
PfeI	GAWTC	1 cut(s)	811
PflMI	CCANNNNNTGG	1 cut(s)	581
PfoI	TCCNGGA	1 cut(s)	311
PkrI	GCNGC	2 cut(s)	772, 976
PleI	GAGTC	2 cut(s)	331, 586
PpsI	GAGTC	2 cut(s)	331, 586
Psp124BI	GAGCTC	1 cut(s)	39
Psp6I	CCWGG	2 cut(s)	250, 311
PspEI	GGTNACC	1 cut(s)	254
PspGI	CCWGG	2 cut(s)	250, 311
PspN4I	GGNNCC	1 cut(s)	708
PstNI	CAGNNNCTG	1 cut(s)	773
PvuII	CAGCTG	2 cut(s)	770, 899
RsaI	GTAC	3 cut(s)	236, 433, 867
RsaNI	GTAC	3 cut(s)	235, 432, 866
RseI	CAYNNNNRTG	1 cut(s)	446
SacI	GAGCTC	1 cut(s)	39
SalI	GTCGAC	1 cut(s)	334
SaqAI	TTAA	5 cut(s)	116, 210, 540, 912, 963
SatI	GCNGC	2 cut(s)	771, 975
Sau3AI	GATC	3 cut(s)	305, 315, 846
SchI	GAGTC	2 cut(s)	331, 586
ScrFI	CCNGG	2 cut(s)	252, 313
SduI	GDGCHC	3 cut(s)	39, 287, 799
SfaNI	GCATC	6 cut(s)	110, 409, 445, 662, 880, 961
SmiMI	CAYNNNNRTG	1 cut(s)	446
SmlI	CTYRAG	1 cut(s)	615
SmoI	CTYRAG	1 cut(s)	615
SphI	GCATGC	1 cut(s)	73
Sse9I	AATT	2 cut(s)	118, 537
SspI	AATATT	1 cut(s)	139
SspMI	CTAG	1 cut(s)	300
SstI	GAGCTC	1 cut(s)	39
StyD4I	CCNGG	2 cut(s)	250, 311
StyI	CCWWGG	2 cut(s)	164, 299
TaaI	ACNGT	1 cut(s)	647
TaqI	TCGA	2 cut(s)	335, 876
TasI	AATT	2 cut(s)	118, 537
TfiI	GAWTC	1 cut(s)	811
Tru1I	TTAA	5 cut(s)	116, 210, 540, 912, 963
Tru9I	TTAA	5 cut(s)	116, 210, 540, 912, 963
TscAI	CASTG	3 cut(s)	325, 448, 652
TseFI	GTSAC	1 cut(s)	178
TseI	GCWGC	2 cut(s)	770, 974
Tsp45I	GTSAC	1 cut(s)	178
TspDTI	ATGAA	3 cut(s)	175, 464, 648
TspRI	CASTG	3 cut(s)	325, 448, 652
Van91I	CCANNNNNTGG	1 cut(s)	581
XceI	RCATGY	1 cut(s)	73
XmaJI	CCTAGG	1 cut(s)	299
XmiI	GTMKAC	1 cut(s)	335
XspI	CTAG	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.