Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0001397

Physical Location & Seq

Genomic Coordinates Reverse (-)

2282776 .. 2285456

Gene Structure 2681 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1029600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGCCCAGCACAAAAATCACAGACGAGCTCTCGAAAGAGAAGAAGCACAAATGCTCTGATTCAACAACGTGTATATTTGAGAAAGTTGGAAGTGAAATGGCGAGCTCAGTGGAGAAGGAGGGTGGGAAGGAGGAGGTTGTGTCCTTGGAACTTCCAGCTCCTTCTGGTTGGGTGAAGAAGTTTCTGCCCAAGCAAAGTGGAACTCCTAAGAAAAATGAGATTGTGTTTACAGCCCCAACGGGAGAAGAGATCACCAGCAAAAGACAGTTGGAACAGTACCTGAAAGCACACCCCGGTGGTCCTGTGGCATCAGAATTTGATTGGGGCACTGGTGAGACACCAAGGCGGTCAGCAAGGATTAGTGAGAAGGCCAAAGCAACTCTGCCGCCAATAGAAAGTGAGCCCCCAAAGAAGCGAAGCAGAAAATCAACTTCGGCAAAGAAGGAGGACAAAGAAAAGGAAGCTGCTCCTGAAGGAGCTGAGGAGACAAAAATTAGTGATGTGCAAGATGCTGAAAAAGCTGAGAAGGATGCAGATACTGAGATGGAAAAGGTTGACGTGAAGGAAAACCAAGATGAGGAAAAAGCACCAGCTCCTCCTGAACAAGCCAAAGTTCAACAAGAAGTTAATGTACCTGGCGATGCTGCAGCTCCGGGAGATTCAAAAGCATCTGTTGATGGGAAGGAGGTTGAAGGGAAAAAAGAAGAAATGGTCGAGCAACCACCTGTTGAGGCAGGGAAAAAGGAAGTGGCAGGGGATCAGGGCAAACCCGGCATTGCTATTGCTGATGATGACAAACATGAAGGAGAAGGAGAGGAAAAAAAGAAACATGGCAAAGAGACCGAAGTAGAAAATATGGAGAAAGCAACAGCGAAAGGGAATGGTGAGGAACATATTAGTTCAGGTGTTCATGAAGCGGGAAGAAGGTTGAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008327 GO:0036094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044444 GO:0044464 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBD

Protein Analysis

313

Amino Acids

33.82

Weight (kDa)

5.25

Isoelectric Point (pI)

50.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MBD	PF01429	44 - 115	3e-13	Methyl-CpG binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001397)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15790 AT3G15790 AT3G15790
fragaria_vesca	FvH4_1g03020 FvH4_1g03020 FvH4_1g03020 FvH4_1g03020 FvH4_6g29820 FvH4_6g29820 FvH4_6g29820 FvH4_6g29820 FvH4_6g29820 FvH4_6g29820
malus_domestica	MD00G1123000.v1.1 MD02G1029600.v1.1 MD15G1171000.v1.1 MD17G1210700.v1.1
prunus_persica	Prupe.3G086000_v2.0.a1 Prupe.7G245300_v2.0.a1
pyrus_communis	pycom02g02450 pycom09g14100 pycom15g15250 pycom17g21570
rosa_chinensis	RchiOBHm_Chr2g0088151 RchiOBHm_Chr2g0135641
rosa_laevigata	RLG00000015926 RLG00000019474
rosa_multiflora	Rmu_co8260895.1_g000001 Rmu_sc0002398.1_g000036 Rmu_sc0003275.1_g000050
rosa_roxburghii	Rroxscaffold_2G00109020 Rroxscaffold_2G00152920 Rroxscaffold_6G00395860 Rroxscaffold_7G00180210
rosa_rugosa	Rorug01G0481300 Rorug02G0325200
rosa_samantha	Rh2AG036300 Rh2AG376800 Rh2BG035500 Rh2BG076400 Rh2BG383100 Rh2CG036700 Rh2CG078600 Rh2CG362500 Rh2DG036000 Rh2DG399200 Rh5DG523600
rosa_wichuraiana	Rw1G013660 Rw2G002860 Rw2G030730 Rw4G021240 Rw4G021900 Rw7G017350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	346, 386, 917
AclWI	GGATC	1 cut(s)	765
AcsI	RAATTY	1 cut(s)	314
AcuI	CTGAAG	1 cut(s)	492
AfaI	GTAC	2 cut(s)	278, 633
AfiI	CCNNNNNNNGG	1 cut(s)	577
AflIII	ACRYGT	1 cut(s)	68
AgsI	TTSAA	5 cut(s)	63, 617, 663, 692, 931
AjiI	CACGTC	1 cut(s)	559
AjnI	CCWGG	1 cut(s)	634
AleI	CACNNNNGTG	1 cut(s)	294
AluBI	AGCT	8 cut(s)	28, 105, 158, 464, 479, 521, 593, 650
AluI	AGCT	8 cut(s)	28, 105, 158, 464, 479, 521, 593, 650
Alw21I	GWGCWC	2 cut(s)	30, 107
Alw26I	GTCTC	3 cut(s)	329, 479, 833
AlwI	GGATC	1 cut(s)	765
AlwNI	CAGNNNCTG	2 cut(s)	280, 539
AoxI	GGCC	1 cut(s)	369
ApeKI	GCWGC	3 cut(s)	464, 644, 647
ApoI	RAATTY	1 cut(s)	314
AspS9I	GGNCC	1 cut(s)	299
AsuC2I	CCSGG	3 cut(s)	294, 654, 771
AsuHPI	GGTGA	4 cut(s)	184, 244, 344, 896
AvaII	GGWCC	1 cut(s)	299
BaeGI	GKGCMC	1 cut(s)	329
BanII	GRGCYC	3 cut(s)	30, 107, 405
BarI	GAAGNNNNNNTAC	2 cut(s)	615, 647
Bbv12I	GWGCWC	2 cut(s)	30, 107
BbvCI	CCTCAGC	1 cut(s)	480
BbvI	GCAGC	3 cut(s)	451, 631, 659
BccI	CCATC	2 cut(s)	538, 671
BciT130I	CCWGG	1 cut(s)	636
BcnI	CCSGG	3 cut(s)	294, 654, 771
BcoDI	GTCTC	3 cut(s)	329, 479, 833
BfmI	CTRYAG	1 cut(s)	645
BisI	GCNGC	4 cut(s)	386, 465, 645, 648
BlsI	GCNGC	4 cut(s)	387, 466, 646, 649
Bme1390I	CCNGG	4 cut(s)	294, 636, 654, 771
Bme18I	GGWCC	1 cut(s)	299
BmgBI	CACGTC	1 cut(s)	559
BmgT120I	GGNCC	1 cut(s)	299
BmrFI	CCNGG	4 cut(s)	294, 636, 654, 771
BmsI	GCATC	5 cut(s)	317, 499, 520, 631, 677
Bpu10I	CCTNAGC	1 cut(s)	480
BpuMI	CCSGG	3 cut(s)	294, 654, 771
BsaI	GGTCTC	1 cut(s)	833
BsaJI	CCNNGG	3 cut(s)	144, 292, 341
BsaXI	ACNNNNNCTCC	2 cut(s)	125, 155
Bsc4I	CCNNNNNNNGG	1 cut(s)	577
Bse1I	ACTGG	1 cut(s)	334
Bse3DI	GCAATG	1 cut(s)	774
BseBI	CCWGG	1 cut(s)	636
BseDI	CCNNGG	3 cut(s)	144, 292, 341
BseGI	GGATG	1 cut(s)	535
BseLI	CCNNNNNNNGG	1 cut(s)	577
BseMI	GCAATG	1 cut(s)	774
BseMII	CTCAG	4 cut(s)	120, 471, 513, 531
BseNI	ACTGG	1 cut(s)	334
BseRI	GAGGAG	3 cut(s)	146, 497, 585
BseSI	GKGCMC	1 cut(s)	329
BseXI	GCAGC	3 cut(s)	451, 631, 659
BseYI	CCCAGC	1 cut(s)	5
BshFI	GGCC	1 cut(s)	371
BsiHKAI	GWGCWC	2 cut(s)	30, 107
BsiSI	CCGG	3 cut(s)	294, 653, 771
BslI	CCNNNNNNNGG	1 cut(s)	577
BsmAI	GTCTC	3 cut(s)	329, 479, 833
BsnI	GGCC	1 cut(s)	371
Bso31I	GGTCTC	1 cut(s)	833
Bsp1286I	GDGCHC	4 cut(s)	30, 107, 329, 405
Bsp143I	GATC	2 cut(s)	249, 757
BspACI	CCGC	3 cut(s)	346, 386, 917
BspANI	GGCC	1 cut(s)	371
BspCNI	CTCAG	4 cut(s)	119, 472, 514, 532
BspHI	TCATGA	1 cut(s)	910
BspMAI	CTGCAG	1 cut(s)	649
BspPI	GGATC	1 cut(s)	765
BspTNI	GGTCTC	1 cut(s)	833
BsrDI	GCAATG	1 cut(s)	774
BsrI	ACTGG	1 cut(s)	334
BssECI	CCNNGG	3 cut(s)	144, 292, 341
BssMI	GATC	2 cut(s)	249, 757
BssT1I	CCWWGG	2 cut(s)	144, 341
Bst2UI	CCWGG	1 cut(s)	636
Bst4CI	ACNGT	2 cut(s)	267, 276
Bst6I	CTCTTC	1 cut(s)	240
BstC8I	GCNNGC	1 cut(s)	103
BstDEI	CTNAG	5 cut(s)	106, 207, 480, 522, 540
BstF5I	GGATG	1 cut(s)	535
BstKTI	GATC	2 cut(s)	252, 760
BstMAI	GTCTC	3 cut(s)	329, 479, 833
BstMBI	GATC	2 cut(s)	249, 757
BstMWI	GCNNNNNNNGC	2 cut(s)	518, 771
BstNI	CCWGG	1 cut(s)	636
BstSCI	CCNGG	4 cut(s)	292, 634, 652, 769
BstSFI	CTRYAG	1 cut(s)	645
BstSLI	GKGCMC	1 cut(s)	329
BstV1I	GCAGC	3 cut(s)	451, 631, 659
BsuRI	GGCC	1 cut(s)	371
BtgZI	GCGATG	1 cut(s)	654
BtrI	CACGTC	1 cut(s)	559
BtsCI	GGATG	1 cut(s)	535
BtsIMutI	CAGTG	2 cut(s)	114, 327
Cac8I	GCNNGC	1 cut(s)	103
CaiI	CAGNNNCTG	2 cut(s)	280, 539
CciI	TCATGA	1 cut(s)	910
Cfr13I	GGNCC	1 cut(s)	299
Csp6I	GTAC	2 cut(s)	277, 632
CspCI	CAANNNNNGTGG	2 cut(s)	178, 213
CviAII	CATG	3 cut(s)	800, 830, 911
CviQI	GTAC	2 cut(s)	277, 632
DdeI	CTNAG	5 cut(s)	106, 207, 480, 522, 540
DpnI	GATC	2 cut(s)	251, 759
DpnII	GATC	2 cut(s)	249, 757
Eam1104I	CTCTTC	1 cut(s)	240
EarI	CTCTTC	1 cut(s)	240
Ecl136II	GAGCTC	2 cut(s)	28, 105
Eco130I	CCWWGG	2 cut(s)	144, 341
Eco24I	GRGCYC	3 cut(s)	30, 107, 405
Eco31I	GGTCTC	1 cut(s)	833
Eco47I	GGWCC	1 cut(s)	299
Eco53kI	GAGCTC	2 cut(s)	28, 105
Eco57I	CTGAAG	1 cut(s)	492
EcoICRI	GAGCTC	2 cut(s)	28, 105
EcoRII	CCWGG	1 cut(s)	634
EcoT14I	CCWWGG	2 cut(s)	144, 341
EcoT38I	GRGCYC	3 cut(s)	30, 107, 405
ErhI	CCWWGG	2 cut(s)	144, 341
FaeI	CATG	3 cut(s)	803, 833, 914
FaiI	YATR	6 cut(s)	74, 801, 831, 857, 894, 912
FatI	CATG	3 cut(s)	799, 829, 910
FauI	CCCGC	1 cut(s)	910
Fnu4HI	GCNGC	4 cut(s)	386, 465, 645, 648
FokI	GGATG	1 cut(s)	542
FriOI	GRGCYC	3 cut(s)	30, 107, 405
Fsp4HI	GCNGC	4 cut(s)	386, 465, 645, 648
GluI	GCNGC	4 cut(s)	386, 465, 645, 648
GsaI	CCCAGC	1 cut(s)	9
HaeIII	GGCC	1 cut(s)	371
HapII	CCGG	3 cut(s)	294, 653, 771
Hin1II	CATG	3 cut(s)	803, 833, 914
HincII	GTYRAC	1 cut(s)	556
HindII	GTYRAC	1 cut(s)	556
HinfI	GANTC	2 cut(s)	59, 659
HpaII	CCGG	3 cut(s)	294, 653, 771
HphI	GGTGA	4 cut(s)	184, 244, 344, 896
Hpy166II	GTNNAC	2 cut(s)	228, 556
Hpy188I	TCNGA	2 cut(s)	58, 313
Hpy188III	TCNNGA	4 cut(s)	31, 470, 599, 911
Hpy8I	GTNNAC	2 cut(s)	228, 556
HpyCH4III	ACNGT	2 cut(s)	267, 276
HpyCH4IV	ACGT	2 cut(s)	68, 558
HpyCH4V	TGCA	3 cut(s)	505, 533, 647
HpyF10VI	GCNNNNNNNGC	2 cut(s)	518, 771
HpyF3I	CTNAG	5 cut(s)	106, 207, 480, 522, 540
HpySE526I	ACGT	2 cut(s)	68, 558
Hsp92II	CATG	3 cut(s)	803, 833, 914
Kzo9I	GATC	2 cut(s)	249, 757
LmnI	GCTCC	5 cut(s)	163, 472, 476, 598, 655
Lsp1109I	GCAGC	3 cut(s)	451, 631, 659
LweI	GCATC	5 cut(s)	317, 499, 520, 631, 677
MaeII	ACGT	2 cut(s)	68, 558
MalI	GATC	2 cut(s)	251, 759
MboI	GATC	2 cut(s)	249, 757
MboII	GAAGA	5 cut(s)	52, 187, 257, 716, 933
MhlI	GDGCHC	4 cut(s)	30, 107, 329, 405
MluCI	AATT	2 cut(s)	314, 492
MmeI	TCCRAC	2 cut(s)	67, 249
MseI	TTAA	1 cut(s)	627
MslI	CAYNNNNRTG	1 cut(s)	294
MspI	CCGG	3 cut(s)	294, 653, 771
MspR9I	CCNGG	4 cut(s)	294, 636, 654, 771
MvaI	CCWGG	1 cut(s)	636
MwoI	GCNNNNNNNGC	2 cut(s)	518, 771
NciI	CCSGG	3 cut(s)	294, 654, 771
NdeII	GATC	2 cut(s)	249, 757
NlaIII	CATG	3 cut(s)	803, 833, 914
OliI	CACNNNNGTG	1 cut(s)	294
PagI	TCATGA	1 cut(s)	910
PfeI	GAWTC	2 cut(s)	59, 659
PfoI	TCCNGGA	1 cut(s)	652
PkrI	GCNGC	4 cut(s)	387, 466, 646, 649
Psp124BI	GAGCTC	2 cut(s)	30, 107
Psp6I	CCWGG	1 cut(s)	634
PspFI	CCCAGC	1 cut(s)	5
PspGI	CCWGG	1 cut(s)	634
PspPI	GGNCC	1 cut(s)	299
PstI	CTGCAG	1 cut(s)	649
PstNI	CAGNNNCTG	2 cut(s)	280, 539
RsaI	GTAC	2 cut(s)	278, 633
RsaNI	GTAC	2 cut(s)	277, 632
RseI	CAYNNNNRTG	1 cut(s)	294
SacI	GAGCTC	2 cut(s)	30, 107
SaqAI	TTAA	1 cut(s)	627
SatI	GCNGC	4 cut(s)	386, 465, 645, 648
Sau3AI	GATC	2 cut(s)	249, 757
Sau96I	GGNCC	1 cut(s)	299
ScrFI	CCNGG	4 cut(s)	294, 636, 654, 771
SduI	GDGCHC	4 cut(s)	30, 107, 329, 405
SfaNI	GCATC	5 cut(s)	317, 499, 520, 631, 677
SfcI	CTRYAG	1 cut(s)	645
SinI	GGWCC	1 cut(s)	299
SmiMI	CAYNNNNRTG	1 cut(s)	294
Sse9I	AATT	2 cut(s)	314, 492
SsiI	CCGC	3 cut(s)	346, 386, 917
SstI	GAGCTC	2 cut(s)	30, 107
StyD4I	CCNGG	4 cut(s)	292, 634, 652, 769
StyI	CCWWGG	2 cut(s)	144, 341
TaaI	ACNGT	2 cut(s)	267, 276
TaiI	ACGT	2 cut(s)	71, 561
TaqI	TCGA	2 cut(s)	32, 714
TaqII	GACCGA	1 cut(s)	857
TasI	AATT	2 cut(s)	314, 492
TauI	GCSGC	1 cut(s)	388
TfiI	GAWTC	2 cut(s)	59, 659
Tru1I	TTAA	1 cut(s)	627
Tru9I	TTAA	1 cut(s)	627
TscAI	CASTG	2 cut(s)	114, 334
TseI	GCWGC	3 cut(s)	464, 644, 647
TspDTI	ATGAA	3 cut(s)	816, 899, 927
TspRI	CASTG	2 cut(s)	114, 334
VpaK11BI	GGWCC	1 cut(s)	299
XapI	RAATTY	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.