Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0013518

Physical Location & Seq

Genomic Coordinates Reverse (-)

1500896 .. 1502441

Gene Structure 1546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g02420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGTCAGGATATATGATGCTCGATCACAGTGTTCTCAAGGCCTTTAGCGGGACTGGGCTTGAATTAGTGGTCGGACTTCCAAATGGGTACCTGAAAGACATGAGTGCCAATGAGGATCATGCAATGGATTGGGTTAAAGAGAATGTGCAGGCATTCCTTCCCGAGACACACATCCGCGGGATTGCTGTGGGCAATGAAGTTCTAGGTGGGGGTGATTATGAATTGTGGGCAGCTCTTTTGGGCACAGTTAAAAACATCTACAATGCAACCAAGAAGCTAGGATTAACTGATGTAGTTCAGATTACGACTGCACATTCACAGGCCGTTTTTGCTAATTCTTATCCTCCCTCTTCATGTATATTTAAAGATACTGTTAAGCAGCAGTACATGAAGCCACTTTTGGAGTTCTTCTCAGAAATTGGATCTCCCTTCTGTTTAAATGCTTACCCGTTCCTTGCTTACATGAGTGATCCGGAGAATATTGATATTAATTATGCTCTTTTCCAGAAAACTCAGGGAATTTCTGATCGATCAAAAACTGACCTTCATTATGATAATATGCTCGATGCTCAGATTGATGCAGCCTATGCAGCATTGGAAGATGCTGGGTTCAAAAAGATGGAAGTTATTGTTACAGAGACAGGGTGGGCTTCACATGGAGGTGACAATGAAGATGCAGCTACTGTAAATAATGCAAGGACATACAATTATAATCTACGTAAAAGGCTAGCAAAGAAAAAAGGGACCCCTATGCGGCCAAAGTTTGTAGTGAAGGCATACATTTTTGCATTATTTAATGAGAACTTGAAAACTGGTGCAACCTCTGAACGAAATTTTGGACTGTTCAAGCCTGATGGGACCATTGCATATGATATTGGGTATCATGGACTTGTATCATCGTCTGCAGATTCATTGCTTTTATCTTCAAAGCACGTTGGAGCGCAAGGTTGGTCTCGTTTGCAATTCTTGATACTATCAATTTCTTCTGCATCATTGCTTCTGTTTTTAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0007154 GO:0008150 GO:0008422 GO:0009505 GO:0009987 GO:0015926 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0042973 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

338

Amino Acids

37.17

Weight (kDa)

6.07

Isoelectric Point (pI)

38.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	8 - 292	1.5e-65	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013518)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26600 AT2G26600
fragaria_vesca	FvH4_1g02990
malus_domestica	MD02G1029300.v1.1 MD15G1170800.v1.1
prunus_persica	Prupe.7G245600_v2.0.a1
pyrus_communis	pycom02g02420 pycom15g15220
rosa_chinensis	RchiOBHm_Chr2g0088131
rosa_laevigata	RLG00000015924
rosa_multiflora	Rmu_sc0003275.1_g000047
rosa_roxburghii	Rroxscaffold_2G00152940
rosa_rugosa	Rorug01G0481300
rosa_samantha	Rh2AG036100 Rh2BG035300 Rh2CG036500 Rh2DG035800
rosa_wichuraiana	Rw2G002840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	711
Acc65I	GGTACC	1 cut(s)	87
AccB1I	GGYRCC	1 cut(s)	87
AccII	CGCG	1 cut(s)	177
AccIII	TCCGGA	1 cut(s)	472
AciI	CCGC	4 cut(s)	48, 175, 177, 754
AclWI	GGATC	3 cut(s)	123, 430, 464
AcoI	YGGCCR	1 cut(s)	755
AcsI	RAATTY	2 cut(s)	519, 832
AfaI	GTAC	2 cut(s)	89, 386
AfiI	CCNNNNNNNGG	2 cut(s)	48, 753
AgsI	TTSAA	5 cut(s)	62, 613, 808, 847, 927
AjuI	GAANNNNNNNTTGG	4 cut(s)	383, 415, 819, 851
AluBI	AGCT	3 cut(s)	233, 277, 680
AluI	AGCT	3 cut(s)	233, 277, 680
Alw26I	GTCTC	3 cut(s)	158, 632, 957
AlwI	GGATC	3 cut(s)	123, 430, 464
AlwNI	CAGNNNCTG	1 cut(s)	683
Ama87I	CYCGRG	1 cut(s)	161
Aor13HI	TCCGGA	1 cut(s)	472
AoxI	GGCC	3 cut(s)	39, 321, 755
ApeKI	GCWGC	5 cut(s)	230, 379, 581, 590, 677
ApoI	RAATTY	2 cut(s)	519, 832
AseI	ATTAAT	1 cut(s)	489
Asp718I	GGTACC	1 cut(s)	87
AspLEI	GCGC	1 cut(s)	943
AspS9I	GGNCC	2 cut(s)	744, 858
AsuHPI	GGTGA	2 cut(s)	224, 674
AsuNHI	GCTAGC	1 cut(s)	727
AvaI	CYCGRG	1 cut(s)	161
AvaII	GGWCC	2 cut(s)	744, 858
BaeGI	GKGCMC	1 cut(s)	245
BanI	GGYRCC	1 cut(s)	87
BbvI	GCAGC	5 cut(s)	242, 391, 593, 602, 689
BccI	CCATC	2 cut(s)	613, 848
BceAI	ACGGC	1 cut(s)	308
BcoDI	GTCTC	3 cut(s)	158, 632, 957
BfaI	CTAG	3 cut(s)	203, 278, 728
BfmI	CTRYAG	1 cut(s)	903
BisI	GCNGC	6 cut(s)	231, 380, 582, 591, 678, 755
BlsI	GCNGC	6 cut(s)	232, 381, 583, 592, 679, 756
Bme18I	GGWCC	2 cut(s)	744, 858
BmeT110I	CYCGRG	1 cut(s)	161
BmgT120I	GGNCC	2 cut(s)	744, 858
BmiI	GGNNCC	4 cut(s)	89, 745, 746, 859
BmrI	ACTGGG	1 cut(s)	63
BmsI	GCATC	6 cut(s)	6, 556, 568, 592, 664, 998
BmtI	GCTAGC	1 cut(s)	731
BmuI	ACTGGG	1 cut(s)	63
BplI	GAGNNNNNCTC	2 cut(s)	395, 427
BpuEI	CTTGAG	1 cut(s)	20
Bsa29I	ATCGAT	1 cut(s)	529
BsaAI	YACGTR	1 cut(s)	719
BsaI	GGTCTC	1 cut(s)	957
BsaJI	CCNNGG	1 cut(s)	175
BsaWI	WCCGGW	1 cut(s)	472
Bsc4I	CCNNNNNNNGG	2 cut(s)	48, 753
Bse1I	ACTGG	2 cut(s)	58, 817
Bse3DI	GCAATG	5 cut(s)	129, 199, 861, 911, 992
BseAI	TCCGGA	1 cut(s)	472
BseCI	ATCGAT	1 cut(s)	529
BseDI	CCNNGG	1 cut(s)	175
BseGI	GGATG	1 cut(s)	171
BseLI	CCNNNNNNNGG	2 cut(s)	48, 753
BseMI	GCAATG	5 cut(s)	129, 199, 861, 911, 992
BseMII	CTCAG	3 cut(s)	426, 527, 584
BseNI	ACTGG	2 cut(s)	58, 817
BseSI	GKGCMC	1 cut(s)	245
BseXI	GCAGC	5 cut(s)	242, 391, 593, 602, 689
BseYI	CCCAGC	1 cut(s)	605
BsgI	GTGCAG	2 cut(s)	167, 294
Bsh1236I	CGCG	1 cut(s)	177
BshFI	GGCC	3 cut(s)	41, 323, 757
BshNI	GGYRCC	1 cut(s)	87
BshVI	ATCGAT	1 cut(s)	529
BsiHKCI	CYCGRG	1 cut(s)	161
BsiSI	CCGG	1 cut(s)	473
BslFI	GGGAC	3 cut(s)	64, 757, 871
BslI	CCNNNNNNNGG	2 cut(s)	48, 753
BsmAI	GTCTC	3 cut(s)	158, 632, 957
BsmFI	GGGAC	3 cut(s)	64, 757, 871
BsmI	GAATGC	1 cut(s)	152
BsnI	GGCC	3 cut(s)	41, 323, 757
Bso31I	GGTCTC	1 cut(s)	957
BsoBI	CYCGRG	1 cut(s)	161
Bsp1286I	GDGCHC	1 cut(s)	245
Bsp13I	TCCGGA	1 cut(s)	472
Bsp143I	GATC	6 cut(s)	22, 115, 422, 469, 526, 530
BspACI	CCGC	4 cut(s)	48, 175, 177, 754
BspANI	GGCC	3 cut(s)	41, 323, 757
BspCNI	CTCAG	3 cut(s)	425, 526, 583
BspDI	ATCGAT	1 cut(s)	529
BspEI	TCCGGA	1 cut(s)	472
BspFNI	CGCG	1 cut(s)	177
BspLI	GGNNCC	4 cut(s)	89, 745, 746, 859
BspMAI	CTGCAG	1 cut(s)	907
BspOI	GCTAGC	1 cut(s)	731
BspPI	GGATC	3 cut(s)	123, 430, 464
BspT107I	GGYRCC	1 cut(s)	87
BspTNI	GGTCTC	1 cut(s)	957
BsrDI	GCAATG	5 cut(s)	129, 199, 861, 911, 992
BsrI	ACTGG	2 cut(s)	58, 817
BssECI	CCNNGG	1 cut(s)	175
BssMI	GATC	6 cut(s)	22, 115, 422, 469, 526, 530
Bst4CI	ACNGT	5 cut(s)	29, 247, 373, 685, 843
Bst6I	CTCTTC	1 cut(s)	355
BstAPI	GCANNNNNTGC	1 cut(s)	587
BstBAI	YACGTR	1 cut(s)	719
BstC8I	GCNNGC	2 cut(s)	150, 729
BstDEI	CTNAG	3 cut(s)	412, 513, 570
BstDSI	CCRYGG	1 cut(s)	175
BstF5I	GGATG	1 cut(s)	171
BstFNI	CGCG	1 cut(s)	177
BstHHI	GCGC	1 cut(s)	943
BstKTI	GATC	6 cut(s)	25, 118, 425, 472, 529, 533
BstMAI	GTCTC	3 cut(s)	158, 632, 957
BstMBI	GATC	6 cut(s)	22, 115, 422, 469, 526, 530
BstMWI	GCNNNNNNNGC	3 cut(s)	329, 587, 590
BstSFI	CTRYAG	1 cut(s)	903
BstSLI	GKGCMC	1 cut(s)	245
BstSNI	TACGTA	1 cut(s)	719
BstUI	CGCG	1 cut(s)	177
BstV1I	GCAGC	5 cut(s)	242, 391, 593, 602, 689
BstX2I	RGATCY	1 cut(s)	422
BstYI	RGATCY	1 cut(s)	422
Bsu15I	ATCGAT	1 cut(s)	529
BsuRI	GGCC	3 cut(s)	41, 323, 757
BsuTUI	ATCGAT	1 cut(s)	529
BtgI	CCRYGG	1 cut(s)	175
BtsCI	GGATG	1 cut(s)	171
BtsIMutI	CAGTG	1 cut(s)	34
Cac8I	GCNNGC	2 cut(s)	150, 729
CaiI	CAGNNNCTG	1 cut(s)	683
CfoI	GCGC	1 cut(s)	943
Cfr13I	GGNCC	2 cut(s)	744, 858
Cfr42I	CCGCGG	1 cut(s)	178
ClaI	ATCGAT	1 cut(s)	529
Csp6I	GTAC	2 cut(s)	88, 385
CviAII	CATG	7 cut(s)	100, 119, 354, 388, 463, 656, 884
CviQI	GTAC	2 cut(s)	88, 385
DdeI	CTNAG	3 cut(s)	412, 513, 570
DpnI	GATC	6 cut(s)	24, 117, 424, 471, 528, 532
DpnII	GATC	6 cut(s)	22, 115, 422, 469, 526, 530
DraI	TTTAAA	3 cut(s)	364, 438, 1008
EaeI	YGGCCR	1 cut(s)	755
Eam1104I	CTCTTC	1 cut(s)	355
EarI	CTCTTC	1 cut(s)	355
Eco105I	TACGTA	1 cut(s)	719
Eco147I	AGGCCT	1 cut(s)	41
Eco31I	GGTCTC	1 cut(s)	957
Eco47I	GGWCC	2 cut(s)	744, 858
Eco88I	CYCGRG	1 cut(s)	161
EcoO109I	RGGNCCY	1 cut(s)	744
FaeI	CATG	7 cut(s)	103, 122, 357, 391, 466, 659, 887
FaqI	GGGAC	3 cut(s)	64, 757, 871
FatI	CATG	7 cut(s)	99, 118, 353, 387, 462, 655, 883
FauI	CCCGC	2 cut(s)	41, 170
FauNDI	CATATG	1 cut(s)	868
Fnu4HI	GCNGC	6 cut(s)	231, 380, 582, 591, 678, 755
FokI	GGATG	1 cut(s)	158
Fsp4HI	GCNGC	6 cut(s)	231, 380, 582, 591, 678, 755
FspBI	CTAG	3 cut(s)	203, 278, 728
GlaI	GCGC	1 cut(s)	942
GluI	GCNGC	6 cut(s)	231, 380, 582, 591, 678, 755
GsaI	CCCAGC	1 cut(s)	609
HaeIII	GGCC	3 cut(s)	41, 323, 757
HapII	CCGG	1 cut(s)	473
HhaI	GCGC	1 cut(s)	943
Hin1II	CATG	7 cut(s)	103, 122, 357, 391, 466, 659, 887
Hin6I	GCGC	1 cut(s)	941
HinP1I	GCGC	1 cut(s)	941
HinfI	GANTC	1 cut(s)	908
HpaII	CCGG	1 cut(s)	473
HphI	GGTGA	2 cut(s)	224, 674
Hpy188I	TCNGA	6 cut(s)	74, 300, 415, 526, 573, 826
Hpy188III	TCNNGA	5 cut(s)	6, 161, 473, 505, 967
HpyAV	CCTTC	4 cut(s)	167, 439, 554, 766
HpyCH4III	ACNGT	5 cut(s)	29, 247, 373, 685, 843
HpyCH4IV	ACGT	2 cut(s)	718, 933
HpyF10VI	GCNNNNNNNGC	3 cut(s)	329, 587, 590
HpyF3I	CTNAG	3 cut(s)	412, 513, 570
HpySE526I	ACGT	2 cut(s)	718, 933
Hsp92II	CATG	7 cut(s)	103, 122, 357, 391, 466, 659, 887
HspAI	GCGC	1 cut(s)	941
KflI	GGGWCCC	1 cut(s)	744
Kpn2I	TCCGGA	1 cut(s)	472
KpnI	GGTACC	1 cut(s)	91
KspI	CCGCGG	1 cut(s)	178
Kzo9I	GATC	6 cut(s)	22, 115, 422, 469, 526, 530
LmnI	GCTCC	1 cut(s)	938
Lsp1109I	GCAGC	5 cut(s)	242, 391, 593, 602, 689
LweI	GCATC	6 cut(s)	6, 556, 568, 592, 664, 998
MaeI	CTAG	3 cut(s)	203, 278, 728
MaeII	ACGT	2 cut(s)	718, 933
MaeIII	GTNAC	2 cut(s)	631, 662
MalI	GATC	6 cut(s)	24, 117, 424, 471, 528, 532
MboI	GATC	6 cut(s)	22, 115, 422, 469, 526, 530
MboII	GAAGA	6 cut(s)	342, 400, 611, 683, 915, 975
MflI	RGATCY	1 cut(s)	422
MhlI	GDGCHC	1 cut(s)	245
MmeI	TCCRAC	2 cut(s)	52, 916
MnlI	CCTC	5 cut(s)	106, 354, 358, 653, 832
MroI	TCCGGA	1 cut(s)	472
MseI	TTAA	9 cut(s)	135, 249, 284, 363, 375, 437, 489, 795, 1007
MslI	CAYNNNNRTG	1 cut(s)	660
MspA1I	CMGCKG	1 cut(s)	177
MspI	CCGG	1 cut(s)	473
Mva1269I	GAATGC	1 cut(s)	152
MvnI	CGCG	1 cut(s)	177
MwoI	GCNNNNNNNGC	3 cut(s)	329, 587, 590
NdeI	CATATG	1 cut(s)	868
NdeII	GATC	6 cut(s)	22, 115, 422, 469, 526, 530
NheI	GCTAGC	1 cut(s)	727
NlaIII	CATG	7 cut(s)	103, 122, 357, 391, 466, 659, 887
NlaIV	GGNNCC	4 cut(s)	89, 745, 746, 859
NmuCI	GTSAC	1 cut(s)	662
PceI	AGGCCT	1 cut(s)	41
PctI	GAATGC	1 cut(s)	152
PfeI	GAWTC	1 cut(s)	908
PkrI	GCNGC	6 cut(s)	232, 381, 583, 592, 679, 756
Ppu21I	YACGTR	1 cut(s)	719
PpuMI	RGGWCCY	1 cut(s)	744
PshBI	ATTAAT	1 cut(s)	489
PsiI	TTATAA	1 cut(s)	711
Psp5II	RGGWCCY	1 cut(s)	744
PspFI	CCCAGC	1 cut(s)	605
PspN4I	GGNNCC	4 cut(s)	89, 745, 746, 859
PspPI	GGNCC	2 cut(s)	744, 858
PspPPI	RGGWCCY	1 cut(s)	744
PstI	CTGCAG	1 cut(s)	907
PstNI	CAGNNNCTG	1 cut(s)	683
PsuI	RGATCY	1 cut(s)	422
RsaI	GTAC	2 cut(s)	89, 386
RsaNI	GTAC	2 cut(s)	88, 385
RseI	CAYNNNNRTG	1 cut(s)	660
SacII	CCGCGG	1 cut(s)	178
SaqAI	TTAA	9 cut(s)	135, 249, 284, 363, 375, 437, 489, 795, 1007
SatI	GCNGC	6 cut(s)	231, 380, 582, 591, 678, 755
Sau3AI	GATC	6 cut(s)	22, 115, 422, 469, 526, 530
Sau96I	GGNCC	2 cut(s)	744, 858
SduI	GDGCHC	1 cut(s)	245
SfaNI	GCATC	6 cut(s)	6, 556, 568, 592, 664, 998
SfcI	CTRYAG	1 cut(s)	903
Sfr303I	CCGCGG	1 cut(s)	178
SgrBI	CCGCGG	1 cut(s)	178
SinI	GGWCC	2 cut(s)	744, 858
SmiMI	CAYNNNNRTG	1 cut(s)	660
SmlI	CTYRAG	1 cut(s)	35
SmoI	CTYRAG	1 cut(s)	35
SnaBI	TACGTA	1 cut(s)	719
SseBI	AGGCCT	1 cut(s)	41
SsiI	CCGC	4 cut(s)	48, 175, 177, 754
SspI	AATATT	1 cut(s)	481
SspMI	CTAG	3 cut(s)	203, 278, 728
StuI	AGGCCT	1 cut(s)	41
TaaI	ACNGT	5 cut(s)	29, 247, 373, 685, 843
TaiI	ACGT	2 cut(s)	721, 936
TaqI	TCGA	3 cut(s)	21, 529, 564
TatI	WGTACW	1 cut(s)	384
TauI	GCSGC	1 cut(s)	757
TfiI	GAWTC	1 cut(s)	908
Tru1I	TTAA	9 cut(s)	135, 249, 284, 363, 375, 437, 489, 795, 1007
Tru9I	TTAA	9 cut(s)	135, 249, 284, 363, 375, 437, 489, 795, 1007
TscAI	CASTG	1 cut(s)	34
TseFI	GTSAC	1 cut(s)	662
TseI	GCWGC	5 cut(s)	230, 379, 581, 590, 677
Tsp45I	GTSAC	1 cut(s)	662
TspDTI	ATGAA	7 cut(s)	210, 234, 342, 404, 536, 684, 900
TspRI	CASTG	1 cut(s)	34
VpaK11BI	GGWCC	2 cut(s)	744, 858
VspI	ATTAAT	1 cut(s)	489
XapI	RAATTY	2 cut(s)	519, 832
XspI	CTAG	3 cut(s)	203, 278, 728

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.