Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0013518

Physical Location & Seq

Genomic Coordinates Reverse (-)

2881320 .. 2883830

Gene Structure 2511 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG036500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGAGAATCAAAAGCTTCTGCTTTTCTGTCCATGTCTTCTTGGTCTTCTTCTCTCTAATTGCCTCTGTGAATGTGCAAGCATTCACTGGAGCATACGGAATAAATTATGGAAGAATTGCAGATAACATTCCTTCTCCAGATAAAGTTGCTACACTTCTTAGAGCAGCAAAGATAAAGAATGTCAGGATATATGATGCTGATCACAGTGTTCTCAAGGCTTTTAGCGGGACTGGGCTTGACTTAGTGGTCGGGCTTCCAAATGGATACGTGAAAGATATGAGTGCCAATCAGGATCATGCACTGGATTGGGTTAAAGAAAATGTGCAGGCATTTCTTCCTGATACACACATCAGAGGGATTGCGGTGGGTAATGAAGTATTAGGTGGGGGTGATCTTGAATTGTGGGCAGCTCTTTTGGGTGCAGTTAAAAACATCTATAATGCAACAAAGATGCTAAAATTAGATGATGTAGTTCAGATTACCACAGCACATTCACAGGCTGTTTTTGCTAATTCATATCCTCCCTCTTCCTGTATATTTAGGGATAATGTTAAGCAGCAGTACATGAAGCCACTTTTGGAGTTCTTCTCAGAAATTGGTTCTCCCTTCTGTCTAAATGCTTACCCATTCCTTGCCTACATGAGTGATCCGGAGAATATTGATATCAACTATGCTCTTTTTCAGAAAACACAGGGGATTTATGATCAAAAAACTGATCTTCATTATGATAATATGCTTGATGCTCAGATTGATGCAGCCTATTCAGCTTTGGAAGATGCTGGTTTGAAAAAGATGGAAGTTATTATTACAGAGACAGGGTGGGCTTCCCGTGGAGATGACAATGAAGCTGCAGCTACAGTAGAGAATGCAAGGACATATAACTATAATCTACGTAAAAGGCTAGCAAAGAAGAAAGGGACCCCTCTCCGGCCACATTTTGTAGTGAAGGCATACATTTTTGCCATATTTAACGAAGACTTGAAACCCGGCGCTACTTCTGAGAGAAATTTTGGACTGTTCAAGCCTGATGGAACCATTTCATATGATATTGGGTTTCATGGACTTGTATCATCTGCAGATTCGTTGCTTTCATCTTTAAAGGATAGTAGAGTTCAAGCCTGGTCTCGGTCCCAATACTTCCTATTACCATTCTCTGCGCTAGCATTTGTTCTGTTTCTTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0007154 GO:0008150 GO:0008422 GO:0009505 GO:0009987 GO:0015926 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0042973 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

394

Amino Acids

43.8

Weight (kDa)

6.46

Isoelectric Point (pI)

35.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	33 - 352	3.5e-79	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013518)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26600 AT2G26600
fragaria_vesca	FvH4_1g02990
malus_domestica	MD02G1029300.v1.1 MD15G1170800.v1.1
prunus_persica	Prupe.7G245600_v2.0.a1
pyrus_communis	pycom02g02420 pycom15g15220
rosa_chinensis	RchiOBHm_Chr2g0088131
rosa_laevigata	RLG00000015924
rosa_multiflora	Rmu_sc0003275.1_g000047
rosa_roxburghii	Rroxscaffold_2G00152940
rosa_rugosa	Rorug01G0481300
rosa_samantha	Rh2AG036100 Rh2BG035300 Rh2CG036500 Rh2DG035800
rosa_wichuraiana	Rw2G002840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	245
AccIII	TCCGGA	1 cut(s)	649
AciI	CCGC	2 cut(s)	225, 362
AclWI	GGATC	2 cut(s)	300, 641
AcoI	YGGCCR	1 cut(s)	929
AcsI	RAATTY	1 cut(s)	1006
AfaI	GTAC	1 cut(s)	563
AfiI	CCNNNNNNNGG	2 cut(s)	927, 1125
AgsI	TTSAA	5 cut(s)	398, 787, 982, 1021, 1115
AjnI	CCWGG	1 cut(s)	1118
AjuI	GAANNNNNNNTTGG	2 cut(s)	560, 592
AluBI	AGCT	5 cut(s)	15, 410, 767, 848, 854
AluI	AGCT	5 cut(s)	15, 410, 767, 848, 854
Alw26I	GTCTC	2 cut(s)	806, 1128
AlwI	GGATC	2 cut(s)	300, 641
Aor13HI	TCCGGA	1 cut(s)	649
AoxI	GGCC	1 cut(s)	929
ApeKI	GCWGC	6 cut(s)	164, 407, 556, 755, 848, 851
ApoI	RAATTY	1 cut(s)	1006
Asp700I	GAANNNNTTC	1 cut(s)	1036
AspLEI	GCGC	2 cut(s)	992, 1159
AspS9I	GGNCC	2 cut(s)	918, 1128
AsuC2I	CCSGG	1 cut(s)	987
AsuHPI	GGTGA	1 cut(s)	401
AsuNHI	GCTAGC	2 cut(s)	901, 1159
AvaII	GGWCC	2 cut(s)	918, 1128
BbsI	GAAGAC	3 cut(s)	28, 37, 981
BbvI	GCAGC	6 cut(s)	176, 419, 568, 767, 835, 863
BccI	CCATC	2 cut(s)	787, 1022
BciT130I	CCWGG	1 cut(s)	1120
BciVI	GTATCC	1 cut(s)	257
BclI	TGATCA	2 cut(s)	199, 703
BcnI	CCSGG	1 cut(s)	987
BcoDI	GTCTC	2 cut(s)	806, 1128
BfaI	CTAG	2 cut(s)	902, 1160
BfmI	CTRYAG	3 cut(s)	849, 855, 1074
BfoI	RGCGCY	1 cut(s)	993
BfuI	GTATCC	1 cut(s)	257
BisI	GCNGC	6 cut(s)	165, 408, 557, 756, 849, 852
BlsI	GCNGC	6 cut(s)	166, 409, 558, 757, 850, 853
Bme1390I	CCNGG	2 cut(s)	987, 1120
Bme18I	GGWCC	2 cut(s)	918, 1128
BmgT120I	GGNCC	2 cut(s)	918, 1128
BmiI	GGNNCC	4 cut(s)	919, 920, 1033, 1130
BmrFI	CCNGG	2 cut(s)	987, 1120
BmrI	ACTGGG	1 cut(s)	240
BmsI	GCATC	5 cut(s)	184, 441, 730, 742, 766
BmtI	GCTAGC	2 cut(s)	905, 1163
BmuI	ACTGGG	1 cut(s)	240
BpiI	GAAGAC	3 cut(s)	28, 37, 981
BplI	GAGNNNNNCTC	2 cut(s)	572, 604
BpmI	CTGGAG	2 cut(s)	108, 120
BpuEI	CTTGAG	1 cut(s)	197
BpuMI	CCSGG	1 cut(s)	987
BsaAI	YACGTR	2 cut(s)	268, 893
BsaBI	GATNNNNATC	1 cut(s)	198
BsaI	GGTCTC	1 cut(s)	1128
BsaJI	CCNNGG	1 cut(s)	829
BsaWI	WCCGGW	1 cut(s)	649
Bsc4I	CCNNNNNNNGG	2 cut(s)	927, 1125
Bse1I	ACTGG	3 cut(s)	91, 235, 306
Bse8I	GATNNNNATC	1 cut(s)	198
BseAI	TCCGGA	1 cut(s)	649
BseBI	CCWGG	1 cut(s)	1120
BseDI	CCNNGG	1 cut(s)	829
BseJI	GATNNNNATC	1 cut(s)	198
BseLI	CCNNNNNNNGG	2 cut(s)	927, 1125
BseMII	CTCAG	3 cut(s)	603, 758, 990
BseNI	ACTGG	3 cut(s)	91, 235, 306
BseXI	GCAGC	6 cut(s)	176, 419, 568, 767, 835, 863
BsgI	GTGCAG	2 cut(s)	344, 441
BshFI	GGCC	1 cut(s)	931
BsiSI	CCGG	3 cut(s)	650, 928, 987
BslFI	GGGAC	3 cut(s)	241, 931, 1114
BslI	CCNNNNNNNGG	2 cut(s)	927, 1125
BsmAI	GTCTC	2 cut(s)	806, 1128
BsmFI	GGGAC	3 cut(s)	241, 931, 1114
BsmI	GAATGC	2 cut(s)	80, 871
BsnI	GGCC	1 cut(s)	931
Bso31I	GGTCTC	1 cut(s)	1128
Bsp13I	TCCGGA	1 cut(s)	649
Bsp143I	GATC	6 cut(s)	199, 292, 391, 646, 703, 715
BspACI	CCGC	2 cut(s)	225, 362
BspANI	GGCC	1 cut(s)	931
BspCNI	CTCAG	3 cut(s)	602, 757, 991
BspEI	TCCGGA	1 cut(s)	649
BspLI	GGNNCC	4 cut(s)	919, 920, 1033, 1130
BspMAI	CTGCAG	2 cut(s)	853, 1078
BspOI	GCTAGC	2 cut(s)	905, 1163
BspPI	GGATC	2 cut(s)	300, 641
BspTNI	GGTCTC	1 cut(s)	1128
BsrI	ACTGG	3 cut(s)	91, 235, 306
BssECI	CCNNGG	1 cut(s)	829
BssMI	GATC	6 cut(s)	199, 292, 391, 646, 703, 715
Bst2UI	CCWGG	1 cut(s)	1120
Bst4CI	ACNGT	3 cut(s)	206, 859, 1017
Bst6I	CTCTTC	1 cut(s)	532
BstBAI	YACGTR	2 cut(s)	268, 893
BstC8I	GCNNGC	4 cut(s)	78, 327, 903, 1161
BstDEI	CTNAG	6 cut(s)	158, 241, 589, 744, 999, 1178
BstDSI	CCRYGG	1 cut(s)	829
BstH2I	RGCGCY	1 cut(s)	993
BstHHI	GCGC	2 cut(s)	992, 1159
BstKTI	GATC	6 cut(s)	202, 295, 394, 649, 706, 718
BstMAI	GTCTC	2 cut(s)	806, 1128
BstMBI	GATC	6 cut(s)	199, 292, 391, 646, 703, 715
BstMWI	GCNNNNNNNGC	2 cut(s)	506, 764
BstNI	CCWGG	1 cut(s)	1120
BstSCI	CCNGG	2 cut(s)	985, 1118
BstSFI	CTRYAG	3 cut(s)	849, 855, 1074
BstSNI	TACGTA	1 cut(s)	893
BstV1I	GCAGC	6 cut(s)	176, 419, 568, 767, 835, 863
BstV2I	GAAGAC	3 cut(s)	28, 37, 981
BsuI	GTATCC	1 cut(s)	257
BsuRI	GGCC	1 cut(s)	931
BtgI	CCRYGG	1 cut(s)	829
BtsIMutI	CAGTG	3 cut(s)	84, 211, 299
Cac8I	GCNNGC	4 cut(s)	78, 327, 903, 1161
CfoI	GCGC	2 cut(s)	992, 1159
Cfr13I	GGNCC	2 cut(s)	918, 1128
Csp6I	GTAC	1 cut(s)	562
CviAII	CATG	5 cut(s)	32, 296, 565, 640, 1058
CviQI	GTAC	1 cut(s)	562
DdeI	CTNAG	6 cut(s)	158, 241, 589, 744, 999, 1178
DpnI	GATC	6 cut(s)	201, 294, 393, 648, 705, 717
DpnII	GATC	6 cut(s)	199, 292, 391, 646, 703, 715
DraI	TTTAAA	1 cut(s)	1098
DrdI	GACNNNNNNGTC	1 cut(s)	245
DseDI	GACNNNNNNGTC	1 cut(s)	245
EaeI	YGGCCR	1 cut(s)	929
Eam1104I	CTCTTC	1 cut(s)	532
EarI	CTCTTC	1 cut(s)	532
Eco105I	TACGTA	1 cut(s)	893
Eco31I	GGTCTC	1 cut(s)	1128
Eco32I	GATATC	1 cut(s)	664
Eco47I	GGWCC	2 cut(s)	918, 1128
EcoO109I	RGGNCCY	1 cut(s)	918
EcoRII	CCWGG	1 cut(s)	1118
EcoRV	GATATC	1 cut(s)	664
FaeI	CATG	5 cut(s)	35, 299, 568, 643, 1061
FaqI	GGGAC	3 cut(s)	241, 931, 1114
FatI	CATG	5 cut(s)	31, 295, 564, 639, 1057
FauI	CCCGC	1 cut(s)	218
FauNDI	CATATG	1 cut(s)	1042
FbaI	TGATCA	2 cut(s)	199, 703
Fnu4HI	GCNGC	6 cut(s)	165, 408, 557, 756, 849, 852
Fsp4HI	GCNGC	6 cut(s)	165, 408, 557, 756, 849, 852
FspBI	CTAG	2 cut(s)	902, 1160
GlaI	GCGC	2 cut(s)	991, 1158
GluI	GCNGC	6 cut(s)	165, 408, 557, 756, 849, 852
GsuI	CTGGAG	2 cut(s)	108, 120
HaeII	RGCGCY	1 cut(s)	993
HaeIII	GGCC	1 cut(s)	931
HapII	CCGG	3 cut(s)	650, 928, 987
HhaI	GCGC	2 cut(s)	992, 1159
Hin1II	CATG	5 cut(s)	35, 299, 568, 643, 1061
Hin6I	GCGC	2 cut(s)	990, 1157
HinP1I	GCGC	2 cut(s)	990, 1157
HindIII	AAGCTT	1 cut(s)	13
HinfI	GANTC	2 cut(s)	6, 1079
HpaII	CCGG	3 cut(s)	650, 928, 987
HphI	GGTGA	1 cut(s)	401
Hpy188I	TCNGA	6 cut(s)	353, 477, 592, 684, 747, 1000
Hpy188III	TCNNGA	6 cut(s)	137, 184, 290, 338, 395, 650
HpyAV	CCTTC	3 cut(s)	141, 616, 940
HpyCH4III	ACNGT	3 cut(s)	206, 859, 1017
HpyCH4IV	ACGT	2 cut(s)	267, 892
HpyF10VI	GCNNNNNNNGC	2 cut(s)	506, 764
HpyF3I	CTNAG	6 cut(s)	158, 241, 589, 744, 999, 1178
HpySE526I	ACGT	2 cut(s)	267, 892
Hsp92II	CATG	5 cut(s)	35, 299, 568, 643, 1061
HspAI	GCGC	2 cut(s)	990, 1157
KflI	GGGWCCC	1 cut(s)	918
Kpn2I	TCCGGA	1 cut(s)	649
Ksp22I	TGATCA	2 cut(s)	199, 703
Kzo9I	GATC	6 cut(s)	199, 292, 391, 646, 703, 715
LmnI	GCTCC	1 cut(s)	89
Lsp1109I	GCAGC	6 cut(s)	176, 419, 568, 767, 835, 863
LweI	GCATC	5 cut(s)	184, 441, 730, 742, 766
MaeI	CTAG	2 cut(s)	902, 1160
MaeII	ACGT	2 cut(s)	267, 892
MalI	GATC	6 cut(s)	201, 294, 393, 648, 705, 717
MboI	GATC	6 cut(s)	199, 292, 391, 646, 703, 715
MluCI	AATT	8 cut(s)	57, 103, 114, 398, 458, 511, 594, 1006
MnlI	CCTC	5 cut(s)	73, 347, 531, 535, 933
MroI	TCCGGA	1 cut(s)	649
MroXI	GAANNNNTTC	1 cut(s)	1036
MseI	TTAA	5 cut(s)	312, 426, 552, 969, 1097
MspI	CCGG	3 cut(s)	650, 928, 987
MspR9I	CCNGG	2 cut(s)	987, 1120
Mva1269I	GAATGC	2 cut(s)	80, 871
MvaI	CCWGG	1 cut(s)	1120
MwoI	GCNNNNNNNGC	2 cut(s)	506, 764
NciI	CCSGG	1 cut(s)	987
NdeI	CATATG	1 cut(s)	1042
NdeII	GATC	6 cut(s)	199, 292, 391, 646, 703, 715
NheI	GCTAGC	2 cut(s)	901, 1159
NlaIII	CATG	5 cut(s)	35, 299, 568, 643, 1061
NlaIV	GGNNCC	4 cut(s)	919, 920, 1033, 1130
PctI	GAATGC	2 cut(s)	80, 871
PdmI	GAANNNNTTC	1 cut(s)	1036
PfeI	GAWTC	2 cut(s)	6, 1079
PkrI	GCNGC	6 cut(s)	166, 409, 558, 757, 850, 853
Ppu21I	YACGTR	2 cut(s)	268, 893
PpuMI	RGGWCCY	1 cut(s)	918
Psp5II	RGGWCCY	1 cut(s)	918
Psp6I	CCWGG	1 cut(s)	1118
PspGI	CCWGG	1 cut(s)	1118
PspN4I	GGNNCC	4 cut(s)	919, 920, 1033, 1130
PspPI	GGNCC	2 cut(s)	918, 1128
PspPPI	RGGWCCY	1 cut(s)	918
PstI	CTGCAG	2 cut(s)	853, 1078
RsaI	GTAC	1 cut(s)	563
RsaNI	GTAC	1 cut(s)	562
SaqAI	TTAA	5 cut(s)	312, 426, 552, 969, 1097
SatI	GCNGC	6 cut(s)	165, 408, 557, 756, 849, 852
Sau3AI	GATC	6 cut(s)	199, 292, 391, 646, 703, 715
Sau96I	GGNCC	2 cut(s)	918, 1128
ScrFI	CCNGG	2 cut(s)	987, 1120
SetI	ASST	8 cut(s)	17, 270, 385, 412, 769, 850, 856, 895
SfaNI	GCATC	5 cut(s)	184, 441, 730, 742, 766
SfcI	CTRYAG	3 cut(s)	849, 855, 1074
SinI	GGWCC	2 cut(s)	918, 1128
SmlI	CTYRAG	1 cut(s)	212
SmoI	CTYRAG	1 cut(s)	212
SnaBI	TACGTA	1 cut(s)	893
Sse9I	AATT	8 cut(s)	57, 103, 114, 398, 458, 511, 594, 1006
SsiI	CCGC	2 cut(s)	225, 362
SspI	AATATT	1 cut(s)	658
SspMI	CTAG	2 cut(s)	902, 1160
StyD4I	CCNGG	2 cut(s)	985, 1118
TaaI	ACNGT	3 cut(s)	206, 859, 1017
TaiI	ACGT	2 cut(s)	270, 895
TaqII	GACCGA	1 cut(s)	1116
TasI	AATT	8 cut(s)	57, 103, 114, 398, 458, 511, 594, 1006
TatI	WGTACW	1 cut(s)	561
TfiI	GAWTC	2 cut(s)	6, 1079
Tru1I	TTAA	5 cut(s)	312, 426, 552, 969, 1097
Tru9I	TTAA	5 cut(s)	312, 426, 552, 969, 1097
TscAI	CASTG	3 cut(s)	91, 211, 306
TseI	GCWGC	6 cut(s)	164, 407, 556, 755, 848, 851
TspDTI	ATGAA	8 cut(s)	387, 504, 581, 710, 858, 1029, 1046, 1080
TspGWI	ACGGA	1 cut(s)	111
TspRI	CASTG	3 cut(s)	91, 211, 306
VpaK11BI	GGWCC	2 cut(s)	918, 1128
XapI	RAATTY	1 cut(s)	1006
XmnI	GAANNNNTTC	1 cut(s)	1036
XspI	CTAG	2 cut(s)	902, 1160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.