AT2G26940

C2H2-type zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0015929
Physical Location & Seq
Reverse (-)
11496518 .. 11497702
1185 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G26940.1

Sequence Viewer

Length: 861 bp
ATGAAGAGAACAAGAGACCTTTATGGTGATGAATCTTCTTCATCGGAATCTGAAGAGTTTCACCGGGAAAAAATCCGGGTGAAGGTGAAGTTACCGGAAGAAAGAAGTGAAGATGAAGATGAGTCTCCTCAGCCTCAGAGGAAGCACTTTTGTGTGATTTGTGAGAAGCAGTTTAGCTCTGGTAAGGCTTATGGTGGTCACGTGAGGATCCACTCCATTGAGTACAATAACAAGGGAAAGATGAAGAAGATGAAGAAGATGAAGTTGAAGAAGAAGAAGAAGAGAAAGATTGGTTTGGTGAAGAAAGAGAAGGAGAAAGAGATAGATCTGGCTAGGACTGACGTGGAAGGTAAGATTAGGTGTTGTCTTTGTGGAAAAGAGTTTCAAACAATGCACTCTTTGTTTGGTCATATGAGGAGACATCCTGACCGGACTTGGAAAGGGATACGACCTCCTCCACCATCGGAGAAGTTCAATCTAAGCTACTTGGATGATGATGTCGATGATGAAGATGAGGATGATGATGATGTGATGAGTAGATCCATGATGATGAGTGATGTACCCGAGGATGTTCAGGGAGCTGCTTGCATTCTAATGATGCTCTCTTACGCTTCAAGAAATTACTGGGCTGGGATAGAGGAATCACCAAAATCCGAGGTAAGAAGTTCGAGTTTCTACAAAGATGATGAAGGAAAAGATAAAGTATTAGGAGATAGTAGGATGGATGAAAAGAAGGGTTTGATTGTAGATATGAAGATAAAGATGGAAATGGAAGTGAAGGTGAATAGTCCTCGAGATGAAGCTAAGAGGTCATTAGGGTTTGATCTCAATCAGCCTCCTTACCATGAAGATCATCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2_6

Protein Analysis

286

Amino Acids

33.35

Weight (kDa)

7.12

Isoelectric Point (pI)

65.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015929)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26940 AT5G56200
fragaria_vesca FvH4_5g31390
malus_domestica MD03G1110900.v1.1 MD11G1124800.v1.1
prunus_persica Prupe.6G093500_v2.0.a1
rosa_laevigata RLG00000001711
rosa_multiflora Rmu_sc0000534.1_g000007
rosa_rugosa Rorug07G0239000
rosa_samantha Rh7AG386400 Rh7BG373000 Rh7CG405700 Rh7DG385100
rosa_wichuraiana Rw0G018440 Rw7G032440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 202, 215, 534
AcuI CTGAAG 1 cut(s) 72
AcvI CACGTG 1 cut(s) 202
AfaI GTAC 2 cut(s) 224, 561
AfiI CCNNNNNNNGG 1 cut(s) 82
AgsI TTSAA 4 cut(s) 268, 386, 475, 615
AjiI CACGTC 1 cut(s) 343
AleI CACNNNNGTG 1 cut(s) 150
AluBI AGCT 4 cut(s) 177, 483, 581, 803
AluI AGCT 4 cut(s) 177, 483, 581, 803
Alw26I GTCTC 3 cut(s) 9, 129, 412
AlwI GGATC 3 cut(s) 202, 215, 534
Ama87I CYCGRG 2 cut(s) 563, 792
ApeKI GCWGC 1 cut(s) 581
Asp700I GAANNNNTTC 1 cut(s) 57
AsuC2I CCSGG 2 cut(s) 65, 77
AsuHPI GGTGA 7 cut(s) 38, 53, 91, 97, 310, 636, 793
AvaI CYCGRG 2 cut(s) 563, 792
BamHI GGATCC 1 cut(s) 207
BbrPI CACGTG 1 cut(s) 202
BbvCI CCTCAGC 1 cut(s) 129
BbvI GCAGC 1 cut(s) 568
BccI CCATC 3 cut(s) 469, 715, 757
BciVI GTATCC 1 cut(s) 438
BcnI CCSGG 2 cut(s) 65, 77
BcoDI GTCTC 3 cut(s) 9, 129, 412
BfaI CTAG 1 cut(s) 333
BfuI GTATCC 1 cut(s) 438
BglII AGATCT 1 cut(s) 325
BisI GCNGC 1 cut(s) 582
BlsI GCNGC 1 cut(s) 583
Bme1390I CCNGG 2 cut(s) 65, 77
BmeT110I CYCGRG 2 cut(s) 563, 792
BmgBI CACGTC 1 cut(s) 343
BmiI GGNNCC 1 cut(s) 209
BmrFI CCNGG 2 cut(s) 65, 77
BmrI ACTGGG 1 cut(s) 634
BmsI GCATC 1 cut(s) 588
BmuI ACTGGG 1 cut(s) 634
Bpu10I CCTNAGC 1 cut(s) 129
BpuMI CCSGG 2 cut(s) 65, 77
BsaAI YACGTR 1 cut(s) 202
BsaBI GATNNNNATC 1 cut(s) 828
BsaI GGTCTC 1 cut(s) 9
BsaJI CCNNGG 2 cut(s) 564, 654
BsaWI WCCGGW 2 cut(s) 94, 429
Bsc4I CCNNNNNNNGG 1 cut(s) 82
Bse1I ACTGG 1 cut(s) 629
Bse8I GATNNNNATC 1 cut(s) 828
BseDI CCNNGG 2 cut(s) 564, 654
BseGI GGATG 7 cut(s) 421, 496, 523, 574, 726, 730, 853
BseJI GATNNNNATC 1 cut(s) 828
BseLI CCNNNNNNNGG 1 cut(s) 82
BseMII CTCAG 2 cut(s) 143, 149
BseNI ACTGG 1 cut(s) 629
BseRI GAGGAG 3 cut(s) 117, 430, 444
BseXI GCAGC 1 cut(s) 568
BseYI CCCAGC 1 cut(s) 629
BsiHKCI CYCGRG 2 cut(s) 563, 792
BsiSI CCGG 4 cut(s) 64, 76, 95, 430
BslI CCNNNNNNNGG 1 cut(s) 82
BsmAI GTCTC 3 cut(s) 9, 129, 412
BsmI GAATGC 1 cut(s) 588
Bso31I GGTCTC 1 cut(s) 9
BsoBI CYCGRG 2 cut(s) 563, 792
Bsp143I GATC 5 cut(s) 207, 325, 539, 823, 850
BspCNI CTCAG 2 cut(s) 142, 148
BspLI GGNNCC 1 cut(s) 209
BspPI GGATC 3 cut(s) 202, 215, 534
BspTNI GGTCTC 1 cut(s) 9
BsrI ACTGG 1 cut(s) 629
BssECI CCNNGG 2 cut(s) 564, 654
BssMI GATC 5 cut(s) 207, 325, 539, 823, 850
Bst6I CTCTTC 2 cut(s) 48, 275
BstBAI YACGTR 1 cut(s) 202
BstC8I GCNNGC 1 cut(s) 586
BstDEI CTNAG 4 cut(s) 129, 135, 479, 804
BstF5I GGATG 7 cut(s) 421, 496, 523, 574, 726, 730, 853
BstKTI GATC 5 cut(s) 210, 328, 542, 826, 853
BstMAI GTCTC 3 cut(s) 9, 129, 412
BstMBI GATC 5 cut(s) 207, 325, 539, 823, 850
BstSCI CCNGG 2 cut(s) 63, 75
BstV1I GCAGC 1 cut(s) 568
BstX2I RGATCY 3 cut(s) 207, 325, 539
BstYI RGATCY 3 cut(s) 207, 325, 539
BsuI GTATCC 1 cut(s) 438
BtrI CACGTC 1 cut(s) 343
BtsCI GGATG 7 cut(s) 421, 496, 523, 574, 726, 730, 853
Cac8I GCNNGC 1 cut(s) 586
Csp6I GTAC 2 cut(s) 223, 560
CviAII CATG 2 cut(s) 544, 845
CviJI RGCY 9 cut(s) 133, 177, 188, 332, 483, 581, 629, 803, 835
CviKI_1 RGCY 9 cut(s) 133, 177, 188, 332, 483, 581, 629, 803, 835
CviQI GTAC 2 cut(s) 223, 560
DdeI CTNAG 4 cut(s) 129, 135, 479, 804
DpnI GATC 5 cut(s) 209, 327, 541, 825, 852
DpnII GATC 5 cut(s) 207, 325, 539, 823, 850
Eam1104I CTCTTC 2 cut(s) 48, 275
EarI CTCTTC 2 cut(s) 48, 275
Eco31I GGTCTC 1 cut(s) 9
Eco57I CTGAAG 1 cut(s) 72
Eco72I CACGTG 1 cut(s) 202
Eco88I CYCGRG 2 cut(s) 563, 792
FaeI CATG 2 cut(s) 547, 848
FaiI YATR 7 cut(s) 24, 192, 411, 413, 545, 752, 846
FatI CATG 2 cut(s) 543, 844
FauNDI CATATG 1 cut(s) 411
Fnu4HI GCNGC 1 cut(s) 582
FokI GGATG 7 cut(s) 408, 503, 530, 581, 733, 737, 840
Fsp4HI GCNGC 1 cut(s) 582
FspBI CTAG 1 cut(s) 333
GluI GCNGC 1 cut(s) 582
GsaI CCCAGC 1 cut(s) 633
HapII CCGG 4 cut(s) 64, 76, 95, 430
Hin1II CATG 2 cut(s) 547, 848
HinfI GANTC 4 cut(s) 32, 47, 122, 641
HpaII CCGG 4 cut(s) 64, 76, 95, 430
HphI GGTGA 7 cut(s) 38, 53, 91, 97, 310, 636, 793
Hpy188I TCNGA 5 cut(s) 46, 52, 138, 466, 655
Hpy188III TCNNGA 3 cut(s) 425, 615, 794
HpyAV CCTTC 6 cut(s) 76, 304, 341, 683, 727, 772
HpyCH4IV ACGT 2 cut(s) 201, 342
HpyCH4V TGCA 2 cut(s) 394, 588
HpyF3I CTNAG 4 cut(s) 129, 135, 479, 804
HpySE526I ACGT 2 cut(s) 201, 342
Hsp92II CATG 2 cut(s) 547, 848
Kzo9I GATC 5 cut(s) 207, 325, 539, 823, 850
LmnI GCTCC 1 cut(s) 578
Lsp1109I GCAGC 1 cut(s) 568
LweI GCATC 1 cut(s) 588
MaeI CTAG 1 cut(s) 333
MaeII ACGT 2 cut(s) 201, 342
MaeIII GTNAC 2 cut(s) 90, 197
MalI GATC 5 cut(s) 209, 327, 541, 825, 852
MboI GATC 5 cut(s) 207, 325, 539, 823, 850
MflI RGATCY 3 cut(s) 207, 325, 539
MluCI AATT 1 cut(s) 619
MlyI GAGTC 1 cut(s) 131
MroXI GAANNNNTTC 1 cut(s) 57
MseI TTAA 1 cut(s) 859
MslI CAYNNNNRTG 3 cut(s) 150, 548, 593
MspI CCGG 4 cut(s) 64, 76, 95, 430
MspR9I CCNGG 2 cut(s) 65, 77
Mva1269I GAATGC 1 cut(s) 588
NciI CCSGG 2 cut(s) 65, 77
NdeI CATATG 1 cut(s) 411
NdeII GATC 5 cut(s) 207, 325, 539, 823, 850
NlaIII CATG 2 cut(s) 547, 848
NlaIV GGNNCC 1 cut(s) 209
NmuCI GTSAC 1 cut(s) 197
OliI CACNNNNGTG 1 cut(s) 150
PaeR7I CTCGAG 1 cut(s) 792
PctI GAATGC 1 cut(s) 588
PdmI GAANNNNTTC 1 cut(s) 57
PfeI GAWTC 3 cut(s) 32, 47, 641
PkrI GCNGC 1 cut(s) 583
PleI GAGTC 1 cut(s) 130
PmaCI CACGTG 1 cut(s) 202
PmlI CACGTG 1 cut(s) 202
PpsI GAGTC 1 cut(s) 130
Ppu21I YACGTR 1 cut(s) 202
PspCI CACGTG 1 cut(s) 202
PspFI CCCAGC 1 cut(s) 629
PspN4I GGNNCC 1 cut(s) 209
PsuI RGATCY 3 cut(s) 207, 325, 539
RsaI GTAC 2 cut(s) 224, 561
RsaNI GTAC 2 cut(s) 223, 560
RseI CAYNNNNRTG 3 cut(s) 150, 548, 593
SaqAI TTAA 1 cut(s) 859
SatI GCNGC 1 cut(s) 582
Sau3AI GATC 5 cut(s) 207, 325, 539, 823, 850
SchI GAGTC 1 cut(s) 131
ScrFI CCNGG 2 cut(s) 65, 77
SfaNI GCATC 1 cut(s) 588
Sfr274I CTCGAG 1 cut(s) 792
SlaI CTCGAG 1 cut(s) 792
SmiMI CAYNNNNRTG 3 cut(s) 150, 548, 593
SmlI CTYRAG 1 cut(s) 792
SmoI CTYRAG 1 cut(s) 792
Sse9I AATT 1 cut(s) 619
SspMI CTAG 1 cut(s) 333
StyD4I CCNGG 2 cut(s) 63, 75
TaiI ACGT 2 cut(s) 204, 345
TaqI TCGA 3 cut(s) 501, 668, 793
TasI AATT 1 cut(s) 619
TatI WGTACW 1 cut(s) 222
TfiI GAWTC 3 cut(s) 32, 47, 641
Tru1I TTAA 1 cut(s) 859
Tru9I TTAA 1 cut(s) 859
TseFI GTSAC 1 cut(s) 197
TseI GCWGC 1 cut(s) 581
Tsp45I GTSAC 1 cut(s) 197
XhoI CTCGAG 1 cut(s) 792
XmnI GAANNNNTTC 1 cut(s) 57
XspI CTAG 1 cut(s) 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.