Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000534.1

Orthogroup ID

OG0015929

Physical Location & Seq

Genomic Coordinates Reverse (-)

28290 .. 29621

Gene Structure 1332 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000534.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1332 bp

atgaaaagctttcaagcgaaacaacaagtgccggaccatgtccgagatcgaattctcaataataatggaaaatctcttggatcatgtcccaatgtgagagtttacagtcaacagcgtcctcattatcttcttcccaagaagatcataagtaagttcaaccctcccaagcagcaccaacaacagcagcaacgatatcattatcctccttcgaatccttctaaattaaatgcaggaatctcgtcgagtttgtcttgctatgtttgcaaaaagagcttcccatcatcacaattcttgtacagccacatgatgagattgcatcccgaaagaggcttgaagggtgtgttgctgccgcaacaagctccgatgatgaagtctgttatcctttctcaatctcagtcatcgaatgaaagaggcaagaagggtgtgttgccgccacaacaagctccgatgatgaagtctgtcatcccttctcaatctctggcatcgaatgaaagaggcatgaagggtgcgttgccgccgcaacaagctccgatgatgaagtctgtcatccctactcaatctctgtcatcgaatgaaagaggcatgaagggtgtgttgccgccgcaacaagctctgatgatgaagtctgtcatcccttctcaatctgtgtcatcgaatgaaagaggcatgaagggtgtgttacagccgcgagctccgatcagtccgatcaagtctgtagttccttctcgatttggatcttcttctgcatcggagttatcagatgtcaaagagccagattgtgatccagtgaagctcttattaagctggggcaagaaagatcggagaggcaggactaataatccttgtccttgtgcttgtaatgctgcaattgctagcctacaaaaacctaatgaaactacggaggccactaaaagtagtagtagcattcctagaagtactaggaatactctaattgctaaccaacaaaatcctaaaccaagcagtagtacaagtacaactgataatgagattagtttgattgatactaagatgatgaagatgacgaagaaacacaaatgcagtatttgccacaaggagtttgacactggtcaggcactcggagggcacaagtcaagtagtgcttgcagggcagtgagagaaaccaaactaatagtttcagcagttcatgaacatgctcctcaagtagtagtgtccaccacgaagaagacgatggatgacattgaagagggtgagattatagaagacggagagattacagatgaagaaggaagtcagcggataagtcataaaatgtttaattttgatctcaatgaacttccttcagaagaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

443

Amino Acids

48.81

Weight (kDa)

9.64

Isoelectric Point (pI)

61.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015929)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26940 AT5G56200
fragaria_vesca	FvH4_5g31390
malus_domestica	MD03G1110900.v1.1 MD11G1124800.v1.1
prunus_persica	Prupe.6G093500_v2.0.a1
rosa_laevigata	RLG00000001711
rosa_multiflora	Rmu_sc0000534.1_g000007
rosa_rugosa	Rorug07G0239000
rosa_samantha	Rh7AG386400 Rh7BG373000 Rh7CG405700 Rh7DG385100
rosa_wichuraiana	Rw0G018440 Rw7G032440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	688
AciI	CCGC	8 cut(s)	350, 431, 515, 518, 599, 602, 686, 1276
AclWI	GGATC	3 cut(s)	88, 742, 776
AcsI	RAATTY	1 cut(s)	51
AcuI	CTGAAG	1 cut(s)	1305
AfaI	GTAC	4 cut(s)	296, 937, 988, 994
AfiI	CCNNNNNNNGG	1 cut(s)	326
AgsI	TTSAA	4 cut(s)	14, 157, 334, 1223
AluBI	AGCT	9 cut(s)	9, 273, 359, 443, 527, 611, 692, 793, 804
AluI	AGCT	9 cut(s)	9, 273, 359, 443, 527, 611, 692, 793, 804
Alw21I	GWGCWC	1 cut(s)	694
AlwI	GGATC	3 cut(s)	88, 742, 776
AoxI	GGCC	1 cut(s)	903
ApeKI	GCWGC	4 cut(s)	169, 184, 346, 863
ApoI	RAATTY	1 cut(s)	51
AspS9I	GGNCC	1 cut(s)	34
AsuHPI	GGTGA	1 cut(s)	1241
AsuII	TTCGAA	1 cut(s)	209
AsuNHI	GCTAGC	1 cut(s)	872
AvaII	GGWCC	1 cut(s)	34
BaeGI	GKGCMC	1 cut(s)	1107
BanII	GRGCYC	1 cut(s)	694
BbsI	GAAGAC	2 cut(s)	1211, 1248
Bbv12I	GWGCWC	1 cut(s)	694
BbvI	GCAGC	4 cut(s)	181, 196, 333, 850
BccI	CCATC	2 cut(s)	286, 1204
BcgI	CGANNNNNNTGC	2 cut(s)	219, 253
BfaI	CTAG	3 cut(s)	873, 930, 939
BfmI	CTRYAG	1 cut(s)	714
BmcAI	AGTACT	1 cut(s)	937
Bme18I	GGWCC	1 cut(s)	34
BmgT120I	GGNCC	1 cut(s)	34
BmsI	GCATC	3 cut(s)	325, 491, 755
BmtI	GCTAGC	1 cut(s)	876
BoxI	GACNNNNGTC	1 cut(s)	1086
BpiI	GAAGAC	2 cut(s)	1211, 1248
Bpu14I	TTCGAA	1 cut(s)	209
BpuEI	CTTGAG	1 cut(s)	1164
BsaBI	GATNNNNATC	2 cut(s)	733, 780
Bsc4I	CCNNNNNNNGG	1 cut(s)	326
Bse1I	ACTGG	2 cut(s)	785, 1090
Bse8I	GATNNNNATC	2 cut(s)	733, 780
BseGI	GGATG	5 cut(s)	316, 462, 546, 630, 1219
BseJI	GATNNNNATC	2 cut(s)	733, 780
BseLI	CCNNNNNNNGG	1 cut(s)	326
BseMII	CTCAG	1 cut(s)	407
BseNI	ACTGG	2 cut(s)	785, 1090
BseRI	GAGGAG	1 cut(s)	1167
BseSI	GKGCMC	1 cut(s)	1107
BseXI	GCAGC	4 cut(s)	181, 196, 333, 850
BseYI	CCCAGC	1 cut(s)	804
Bsh1236I	CGCG	1 cut(s)	688
BshFI	GGCC	1 cut(s)	905
BsiHKAI	GWGCWC	1 cut(s)	694
BsiSI	CCGG	1 cut(s)	32
BslFI	GGGAC	1 cut(s)	72
BslI	CCNNNNNNNGG	1 cut(s)	326
BsmFI	GGGAC	1 cut(s)	72
BsmI	GAATGC	1 cut(s)	924
BsnI	GGCC	1 cut(s)	905
Bsp119I	TTCGAA	1 cut(s)	209
Bsp1286I	GDGCHC	2 cut(s)	694, 1107
Bsp1407I	TGTACA	1 cut(s)	294
Bsp143I	GATC	9 cut(s)	46, 80, 141, 696, 705, 734, 781, 817, 1303
BspACI	CCGC	8 cut(s)	350, 431, 515, 518, 599, 602, 686, 1276
BspANI	GGCC	1 cut(s)	905
BspCNI	CTCAG	1 cut(s)	406
BspFNI	CGCG	1 cut(s)	688
BspHI	TCATGA	1 cut(s)	1165
BspOI	GCTAGC	1 cut(s)	876
BspPI	GGATC	3 cut(s)	88, 742, 776
BspT104I	TTCGAA	1 cut(s)	209
BsrGI	TGTACA	1 cut(s)	294
BsrI	ACTGG	2 cut(s)	785, 1090
BssMI	GATC	9 cut(s)	46, 80, 141, 696, 705, 734, 781, 817, 1303
Bst4CI	ACNGT	1 cut(s)	107
Bst6I	CTCTTC	1 cut(s)	1218
BstAPI	GCANNNNNTGC	1 cut(s)	1065
BstAUI	TGTACA	1 cut(s)	294
BstBI	TTCGAA	1 cut(s)	209
BstC8I	GCNNGC	3 cut(s)	690, 874, 1123
BstDEI	CTNAG	2 cut(s)	393, 1026
BstF5I	GGATG	5 cut(s)	316, 462, 546, 630, 1219
BstFNI	CGCG	1 cut(s)	688
BstKTI	GATC	9 cut(s)	49, 83, 144, 699, 708, 737, 784, 820, 1306
BstMBI	GATC	9 cut(s)	46, 80, 141, 696, 705, 734, 781, 817, 1303
BstMWI	GCNNNNNNNGC	6 cut(s)	261, 270, 860, 869, 1065, 1127
BstNSI	RCATGY	1 cut(s)	1175
BstPAI	GACNNNNGTC	1 cut(s)	1086
BstSFI	CTRYAG	1 cut(s)	714
BstSLI	GKGCMC	1 cut(s)	1107
BstUI	CGCG	1 cut(s)	688
BstV1I	GCAGC	4 cut(s)	181, 196, 333, 850
BstV2I	GAAGAC	2 cut(s)	1211, 1248
BstX2I	RGATCY	1 cut(s)	734
BstYI	RGATCY	1 cut(s)	734
BsuRI	GGCC	1 cut(s)	905
BtsCI	GGATG	5 cut(s)	316, 462, 546, 630, 1219
BtsI	GCAGTG	1 cut(s)	1137
BtsIMutI	CAGTG	3 cut(s)	792, 1083, 1137
Cac8I	GCNNGC	3 cut(s)	690, 874, 1123
CciI	TCATGA	1 cut(s)	1165
Cfr13I	GGNCC	1 cut(s)	34
CseI	GACGC	1 cut(s)	104
Csp6I	GTAC	4 cut(s)	295, 936, 987, 993
CviAII	CATG	8 cut(s)	38, 84, 304, 499, 583, 667, 1166, 1172
CviQI	GTAC	4 cut(s)	295, 936, 987, 993
DdeI	CTNAG	2 cut(s)	393, 1026
DpnI	GATC	9 cut(s)	48, 82, 143, 698, 707, 736, 783, 819, 1305
DpnII	GATC	9 cut(s)	46, 80, 141, 696, 705, 734, 781, 817, 1303
Eam1104I	CTCTTC	1 cut(s)	1218
EarI	CTCTTC	1 cut(s)	1218
Ecl136II	GAGCTC	1 cut(s)	692
Eco24I	GRGCYC	1 cut(s)	694
Eco32I	GATATC	1 cut(s)	194
Eco47I	GGWCC	1 cut(s)	34
Eco53kI	GAGCTC	1 cut(s)	692
Eco57I	CTGAAG	1 cut(s)	1305
EcoICRI	GAGCTC	1 cut(s)	692
EcoRI	GAATTC	1 cut(s)	51
EcoRV	GATATC	1 cut(s)	194
EcoT38I	GRGCYC	1 cut(s)	694
FaeI	CATG	8 cut(s)	41, 87, 307, 502, 586, 670, 1169, 1175
FalI	AAGNNNNNCTT	2 cut(s)	1105, 1137
FaqI	GGGAC	1 cut(s)	72
FatI	CATG	8 cut(s)	37, 83, 303, 498, 582, 666, 1165, 1171
FokI	GGATG	5 cut(s)	303, 449, 533, 617, 1226
FriOI	GRGCYC	1 cut(s)	694
FspBI	CTAG	3 cut(s)	873, 930, 939
GsaI	CCCAGC	1 cut(s)	808
HaeIII	GGCC	1 cut(s)	905
HapII	CCGG	1 cut(s)	32
HgaI	GACGC	1 cut(s)	104
Hin1II	CATG	8 cut(s)	41, 87, 307, 502, 586, 670, 1169, 1175
HincII	GTYRAC	1 cut(s)	110
HindII	GTYRAC	1 cut(s)	110
HindIII	AAGCTT	1 cut(s)	7
HinfI	GANTC	2 cut(s)	211, 234
HpaII	CCGG	1 cut(s)	32
HphI	GGTGA	1 cut(s)	1241
Hpy166II	GTNNAC	3 cut(s)	103, 110, 1194
Hpy188III	TCNNGA	3 cut(s)	320, 726, 1166
Hpy8I	GTNNAC	3 cut(s)	103, 110, 1194
Hpy99I	CGWCG	1 cut(s)	244
HpyCH4III	ACNGT	1 cut(s)	107
HpyCH4V	TGCA	7 cut(s)	230, 264, 316, 746, 866, 1059, 1125
HpyF10VI	GCNNNNNNNGC	6 cut(s)	261, 270, 860, 869, 1065, 1127
HpyF3I	CTNAG	2 cut(s)	393, 1026
Hsp92II	CATG	8 cut(s)	41, 87, 307, 502, 586, 670, 1169, 1175
Kzo9I	GATC	9 cut(s)	46, 80, 141, 696, 705, 734, 781, 817, 1303
LmnI	GCTCC	5 cut(s)	364, 448, 532, 697, 1180
Lsp1109I	GCAGC	4 cut(s)	181, 196, 333, 850
LweI	GCATC	3 cut(s)	325, 491, 755
MaeI	CTAG	3 cut(s)	873, 930, 939
MaeIII	GTNAC	1 cut(s)	678
MalI	GATC	9 cut(s)	48, 82, 143, 698, 707, 736, 783, 819, 1305
MboI	GATC	9 cut(s)	46, 80, 141, 696, 705, 734, 781, 817, 1303
MfeI	CAATTG	1 cut(s)	867
MflI	RGATCY	1 cut(s)	734
MhlI	GDGCHC	2 cut(s)	694, 1107
MluCI	AATT	6 cut(s)	51, 221, 287, 867, 951, 1297
MseI	TTAA	3 cut(s)	224, 800, 1296
MslI	CAYNNNNRTG	1 cut(s)	1170
MspA1I	CMGCKG	1 cut(s)	1276
MspI	CCGG	1 cut(s)	32
MunI	CAATTG	1 cut(s)	867
Mva1269I	GAATGC	1 cut(s)	924
MvnI	CGCG	1 cut(s)	688
MwoI	GCNNNNNNNGC	6 cut(s)	261, 270, 860, 869, 1065, 1127
NdeII	GATC	9 cut(s)	46, 80, 141, 696, 705, 734, 781, 817, 1303
NheI	GCTAGC	1 cut(s)	872
NlaIII	CATG	8 cut(s)	41, 87, 307, 502, 586, 670, 1169, 1175
NspI	RCATGY	1 cut(s)	1175
NspV	TTCGAA	1 cut(s)	209
PagI	TCATGA	1 cut(s)	1165
PcsI	WCGNNNNNNNCGW	1 cut(s)	1205
PctI	GAATGC	1 cut(s)	924
PfeI	GAWTC	2 cut(s)	211, 234
PflFI	GACNNNGTC	1 cut(s)	38
PshAI	GACNNNNGTC	1 cut(s)	1086
Psp124BI	GAGCTC	1 cut(s)	694
PspFI	CCCAGC	1 cut(s)	804
PspPI	GGNCC	1 cut(s)	34
PsuI	RGATCY	1 cut(s)	734
PsyI	GACNNNGTC	1 cut(s)	38
RsaI	GTAC	4 cut(s)	296, 937, 988, 994
RsaNI	GTAC	4 cut(s)	295, 936, 987, 993
RseI	CAYNNNNRTG	1 cut(s)	1170
SacI	GAGCTC	1 cut(s)	694
SaqAI	TTAA	3 cut(s)	224, 800, 1296
Sau3AI	GATC	9 cut(s)	46, 80, 141, 696, 705, 734, 781, 817, 1303
Sau96I	GGNCC	1 cut(s)	34
ScaI	AGTACT	1 cut(s)	937
SduI	GDGCHC	2 cut(s)	694, 1107
SfaNI	GCATC	3 cut(s)	325, 491, 755
SfcI	CTRYAG	1 cut(s)	714
SfuI	TTCGAA	1 cut(s)	209
SinI	GGWCC	1 cut(s)	34
SmiMI	CAYNNNNRTG	1 cut(s)	1170
SmlI	CTYRAG	1 cut(s)	1179
SmoI	CTYRAG	1 cut(s)	1179
Sse9I	AATT	6 cut(s)	51, 221, 287, 867, 951, 1297
SsiI	CCGC	8 cut(s)	350, 431, 515, 518, 599, 602, 686, 1276
SspMI	CTAG	3 cut(s)	873, 930, 939
SstI	GAGCTC	1 cut(s)	694
TaaI	ACNGT	1 cut(s)	107
TaqI	TCGA	8 cut(s)	49, 209, 242, 401, 485, 569, 653, 727
TasI	AATT	6 cut(s)	51, 221, 287, 867, 951, 1297
TatI	WGTACW	4 cut(s)	294, 935, 986, 992
TauI	GCSGC	7 cut(s)	352, 433, 517, 520, 601, 604, 688
TfiI	GAWTC	2 cut(s)	211, 234
Tru1I	TTAA	3 cut(s)	224, 800, 1296
Tru9I	TTAA	3 cut(s)	224, 800, 1296
TscAI	CASTG	3 cut(s)	792, 1090, 1137
TseI	GCWGC	4 cut(s)	169, 184, 346, 863
TspGWI	ACGGA	2 cut(s)	914, 1260
TspRI	CASTG	3 cut(s)	792, 1090, 1137
Tth111I	GACNNNGTC	1 cut(s)	38
VpaK11BI	GGWCC	1 cut(s)	34
XapI	RAATTY	1 cut(s)	51
XceI	RCATGY	1 cut(s)	1175
XspI	CTAG	3 cut(s)	873, 930, 939
ZrmI	AGTACT	1 cut(s)	937

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.