RLG00000001711

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0015929
Physical Location & Seq
Reverse (-)
19411243 .. 19413247
2005 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001711

Sequence Viewer

Length: 1575 bp
ATGTCCAATCTTATTGATAGTGGGAACAGTATAGGAAAGTTCTCGGTGAAGCAATGCTATGAAGTTGATCGAGTTGCACCTCGAAAAGGAAAGGGTTTTACCCACCTTATCCCAATCAAATTAGAATTCTCATCCTTCATAACTAAGAACGATATGAAAAGCTTTCAAGCGAAACAACAAGTGCCGGACCATGTCCTAGATCGAATTATCAAAACTAATGAAAAATCTCTTGGATCATGTCCCAATGTGAGAGTTTACAGTCAACAGCGTCCTCATTATCTTCTTCCCAAGAAGATCATAAGCAAGTTCAACCCTCCCAAGCAGCACCAACAACAGCAGCAACGATATCATTATCCTCCTTCAAATCCTTCTAAATTGAATGCAGGAATCTCGTCGAGTTTGTCTTGCTATGTTTGCAAAAAGAGCTTCCCATCATCACAATTCTTGTACAGCCACATGATGAGATTGCATCCCGAAAGAGGCTTGAAGGGTGTGTTGCTGCCGCAACAAGCTCCGATGAAGAAGTCTGTCATCCCTTCTCAATCTCTGTCATCAAATGAAAGAGGCATGAAGGGTGTGTTGGCGCCGCAAAAAGCTCCGATGATGAAGTCTGTCATCCCTTCTCAATCTCTGTCATCGAATGAAAGAGGCATGAAGGGTGCGTTGCCGCCGCAACAAGCTCCGATGATGAAGTCTGTCATCCCTTCTCAATCTCTATCATCGAATGAAAGAGGCATGAAGGGTGCGTTGCCGCCGCAACAAGCTCCGATGATGAAGTCTGTCATCCCTTCTCAATCTCTGTCATCGAATGAAAGAGGCATGAAGGGTGCGTTGCCGCCGCAACAAGCTCCGATGAAGTCTATTATCCTTTCTCAATCTCTGTCATCGAATGAAAGAGGCATGAAGGGTGTGTTACAGCCGCGAGCTCCGATCAGTCCGATCAAGTCTGTAGTTCCTTCTCGATTTGGATCTTCTTTTGCATCGGAGTTATCAGATGTCAAAGAGCCAGATTGTGATCCAGTGAAGCTCTTCTTAAGCTGGGGCAAGAAAGATCGGAGAGGCAGGACTAATAATCCTTGTCCTTGTGCTTGTAATGCTGCAATTGCTAGCCTACAAAAACCTAATGAAACTACGGAGGCCACTAAAAGTAGTAGTAGCATTCCTAGTAGTACTAGGAATACTCTAATTGCTAACCAACAAAATCCTAAACCAGGCAGTAGTACAAGCAGCACTGATAATGAGATTAGTTTGATTGATAATAAGATGATGAAGATGACGATGATGAAGAAGAAATACAAATGCAGTATTTGCCACAAGGAGTTTGACACTGGTCAGGCACTCGGAGGGCACAAGTCAAGTAGTGCTTGCAGGGCAGTGAGAGAAACCAAACTAATAGTTTCAGCAGCTCATGAACATGCTCCTCAAGTAGTAGTGTCCACCACGAAGAAGACGGTGGATGACATTGAGGAGGGTGAGATTATAGAAGACGGAGAGATTACAGATGAAGAAGGAAGTCAGCGGATAAGTCATAAAATGTTTGATTTTGATCTCAATGAACTTCCTCCAGAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2_6

Protein Analysis

525

Amino Acids

57.66

Weight (kDa)

9.62

Isoelectric Point (pI)

55.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_6 PF13912 432 - 453 3e-08 C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015929)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26940 AT5G56200
fragaria_vesca FvH4_5g31390
malus_domestica MD03G1110900.v1.1 MD11G1124800.v1.1
prunus_persica Prupe.6G093500_v2.0.a1
rosa_laevigata RLG00000001711
rosa_multiflora Rmu_sc0000534.1_g000007
rosa_rugosa Rorug07G0239000
rosa_samantha Rh7AG386400 Rh7BG373000 Rh7CG405700 Rh7DG385100
rosa_wichuraiana Rw0G018440 Rw7G032440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 583
AccII CGCG 1 cut(s) 922
AclWI GGATC 3 cut(s) 241, 976, 1010
AcsI RAATTY 1 cut(s) 125
AcyI GRCGYC 1 cut(s) 584
AfaI GTAC 3 cut(s) 449, 1171, 1222
AfiI CCNNNNNNNGG 3 cut(s) 86, 479, 1211
AflII CTTAAG 1 cut(s) 1033
AgsI TTSAA 5 cut(s) 167, 310, 363, 379, 487
AjnI CCWGG 1 cut(s) 1210
AjuI GAANNNNNNNTTGG 4 cut(s) 213, 245, 563, 595
Alw21I GWGCWC 1 cut(s) 928
AlwI GGATC 3 cut(s) 241, 976, 1010
AoxI GGCC 1 cut(s) 1137
ApeKI GCWGC 6 cut(s) 322, 337, 499, 1097, 1227, 1403
ApoI RAATTY 1 cut(s) 125
Asp700I GAANNNNTTC 1 cut(s) 1028
AspLEI GCGC 1 cut(s) 586
AspS9I GGNCC 1 cut(s) 187
AsuHPI GGTGA 2 cut(s) 58, 1484
AsuNHI GCTAGC 1 cut(s) 1106
AvaII GGWCC 1 cut(s) 187
BaeGI GKGCMC 1 cut(s) 1350
BanI GGYRCC 1 cut(s) 583
BanII GRGCYC 1 cut(s) 928
BarI GAAGNNNNNNTAC 2 cut(s) 1277, 1309
BbsI GAAGAC 2 cut(s) 1454, 1491
Bbv12I GWGCWC 1 cut(s) 928
BbvI GCAGC 6 cut(s) 334, 349, 486, 1084, 1239, 1415
BccI CCATC 1 cut(s) 439
BcgI CGANNNNNNTGC 2 cut(s) 372, 406
BciT130I CCWGG 1 cut(s) 1212
BfaI CTAG 4 cut(s) 197, 1107, 1164, 1173
BfmI CTRYAG 1 cut(s) 948
BfoI RGCGCY 1 cut(s) 587
BfrI CTTAAG 1 cut(s) 1033
BmcAI AGTACT 1 cut(s) 1171
Bme1390I CCNGG 1 cut(s) 1212
Bme18I GGWCC 1 cut(s) 187
BmgT120I GGNCC 1 cut(s) 187
BmiI GGNNCC 1 cut(s) 585
BmrFI CCNGG 1 cut(s) 1212
BmsI GCATC 2 cut(s) 478, 989
BmtI GCTAGC 1 cut(s) 1110
BoxI GACNNNNGTC 1 cut(s) 1329
BpiI GAAGAC 2 cut(s) 1454, 1491
BpmI CTGGAG 1 cut(s) 1548
BpuEI CTTGAG 1 cut(s) 1407
BsaBI GATNNNNATC 3 cut(s) 967, 1014, 1545
BsaHI GRCGYC 1 cut(s) 584
Bsc4I CCNNNNNNNGG 3 cut(s) 86, 479, 1211
Bse1I ACTGG 2 cut(s) 1019, 1333
Bse3DI GCAATG 1 cut(s) 59
Bse8I GATNNNNATC 3 cut(s) 967, 1014, 1545
BseBI CCWGG 1 cut(s) 1212
BseGI GGATG 7 cut(s) 131, 469, 531, 615, 699, 783, 1462
BseJI GATNNNNATC 3 cut(s) 967, 1014, 1545
BseLI CCNNNNNNNGG 3 cut(s) 86, 479, 1211
BseMI GCAATG 1 cut(s) 59
BseNI ACTGG 2 cut(s) 1019, 1333
BseRI GAGGAG 2 cut(s) 1410, 1481
BseSI GKGCMC 1 cut(s) 1350
BseXI GCAGC 6 cut(s) 334, 349, 486, 1084, 1239, 1415
BseYI CCCAGC 1 cut(s) 1038
Bsh1236I CGCG 1 cut(s) 922
BshFI GGCC 1 cut(s) 1139
BshNI GGYRCC 1 cut(s) 583
BsiHKAI GWGCWC 1 cut(s) 928
BsiSI CCGG 1 cut(s) 185
BslFI GGGAC 1 cut(s) 225
BslI CCNNNNNNNGG 3 cut(s) 86, 479, 1211
BsmFI GGGAC 1 cut(s) 225
BsmI GAATGC 2 cut(s) 385, 1158
BsnI GGCC 1 cut(s) 1139
Bsp1286I GDGCHC 2 cut(s) 928, 1350
Bsp1407I TGTACA 1 cut(s) 447
BspANI GGCC 1 cut(s) 1139
BspFNI CGCG 1 cut(s) 922
BspHI TCATGA 1 cut(s) 1408
BspLI GGNNCC 1 cut(s) 585
BspOI GCTAGC 1 cut(s) 1110
BspPI GGATC 3 cut(s) 241, 976, 1010
BspQI GCTCTTC 1 cut(s) 1034
BspT107I GGYRCC 1 cut(s) 583
BspTI CTTAAG 1 cut(s) 1033
BsrDI GCAATG 1 cut(s) 59
BsrGI TGTACA 1 cut(s) 447
BsrI ACTGG 2 cut(s) 1019, 1333
BssNI GRCGYC 1 cut(s) 584
Bst2UI CCWGG 1 cut(s) 1212
Bst4CI ACNGT 3 cut(s) 29, 260, 1453
Bst6I CTCTTC 1 cut(s) 1034
BstACI GRCGYC 1 cut(s) 584
BstAFI CTTAAG 1 cut(s) 1033
BstAPI GCANNNNNTGC 1 cut(s) 1308
BstAUI TGTACA 1 cut(s) 447
BstC8I GCNNGC 3 cut(s) 924, 1108, 1366
BstDEI CTNAG 1 cut(s) 144
BstENI CCTNNNNNAGG 2 cut(s) 84, 1209
BstF5I GGATG 7 cut(s) 131, 469, 531, 615, 699, 783, 1462
BstFNI CGCG 1 cut(s) 922
BstH2I RGCGCY 1 cut(s) 587
BstHHI GCGC 1 cut(s) 586
BstMWI GCNNNNNNNGC 6 cut(s) 414, 423, 1094, 1103, 1308, 1370
BstNI CCWGG 1 cut(s) 1212
BstNSI RCATGY 1 cut(s) 1418
BstPAI GACNNNNGTC 1 cut(s) 1329
BstSCI CCNGG 1 cut(s) 1210
BstSFI CTRYAG 1 cut(s) 948
BstSLI GKGCMC 1 cut(s) 1350
BstUI CGCG 1 cut(s) 922
BstV1I GCAGC 6 cut(s) 334, 349, 486, 1084, 1239, 1415
BstV2I GAAGAC 2 cut(s) 1454, 1491
BstX2I RGATCY 1 cut(s) 968
BstYI RGATCY 1 cut(s) 968
BsuRI GGCC 1 cut(s) 1139
BtsCI GGATG 7 cut(s) 131, 469, 531, 615, 699, 783, 1462
BtsI GCAGTG 1 cut(s) 1380
BtsIMutI CAGTG 4 cut(s) 1026, 1230, 1326, 1380
Cac8I GCNNGC 3 cut(s) 924, 1108, 1366
CciI TCATGA 1 cut(s) 1408
CfoI GCGC 1 cut(s) 586
Cfr13I GGNCC 1 cut(s) 187
CseI GACGC 1 cut(s) 257
Csp6I GTAC 3 cut(s) 448, 1170, 1221
CviQI GTAC 3 cut(s) 448, 1170, 1221
DdeI CTNAG 1 cut(s) 144
DinI GGCGCC 1 cut(s) 585
Eam1104I CTCTTC 1 cut(s) 1034
EarI CTCTTC 1 cut(s) 1034
Ecl136II GAGCTC 1 cut(s) 926
Eco24I GRGCYC 1 cut(s) 928
Eco32I GATATC 1 cut(s) 347
Eco47I GGWCC 1 cut(s) 187
Eco53kI GAGCTC 1 cut(s) 926
EcoICRI GAGCTC 1 cut(s) 926
EcoNI CCTNNNNNAGG 2 cut(s) 84, 1209
EcoRI GAATTC 1 cut(s) 125
EcoRII CCWGG 1 cut(s) 1210
EcoRV GATATC 1 cut(s) 347
EcoT38I GRGCYC 1 cut(s) 928
EgeI GGCGCC 1 cut(s) 585
EheI GGCGCC 1 cut(s) 585
FalI AAGNNNNNCTT 4 cut(s) 1016, 1048, 1348, 1380
FaqI GGGAC 1 cut(s) 225
FokI GGATG 7 cut(s) 118, 456, 518, 602, 686, 770, 1469
FriOI GRGCYC 1 cut(s) 928
FspBI CTAG 4 cut(s) 197, 1107, 1164, 1173
GlaI GCGC 1 cut(s) 585
GsaI CCCAGC 1 cut(s) 1042
GsuI CTGGAG 1 cut(s) 1548
HaeII RGCGCY 1 cut(s) 587
HaeIII GGCC 1 cut(s) 1139
HapII CCGG 1 cut(s) 185
HgaI GACGC 1 cut(s) 257
HhaI GCGC 1 cut(s) 586
Hin1I GRCGYC 1 cut(s) 584
Hin6I GCGC 1 cut(s) 584
HinP1I GCGC 1 cut(s) 584
HincII GTYRAC 1 cut(s) 263
HindII GTYRAC 1 cut(s) 263
HindIII AAGCTT 1 cut(s) 160
HinfI GANTC 1 cut(s) 387
HpaII CCGG 1 cut(s) 185
HphI GGTGA 2 cut(s) 58, 1484
Hpy166II GTNNAC 3 cut(s) 256, 263, 1437
Hpy188III TCNNGA 4 cut(s) 473, 960, 1409, 1565
Hpy8I GTNNAC 3 cut(s) 256, 263, 1437
Hpy99I CGWCG 1 cut(s) 397
HpyCH4III ACNGT 3 cut(s) 29, 260, 1453
HpyCH4V TGCA 8 cut(s) 77, 383, 417, 469, 980, 1100, 1302, 1368
HpyF10VI GCNNNNNNNGC 6 cut(s) 414, 423, 1094, 1103, 1308, 1370
HpyF3I CTNAG 1 cut(s) 144
Hsp92I GRCGYC 1 cut(s) 584
HspAI GCGC 1 cut(s) 584
KasI GGCGCC 1 cut(s) 583
LguI GCTCTTC 1 cut(s) 1034
LmnI GCTCC 7 cut(s) 517, 601, 685, 769, 853, 931, 1423
Lsp1109I GCAGC 6 cut(s) 334, 349, 486, 1084, 1239, 1415
LweI GCATC 2 cut(s) 478, 989
MaeI CTAG 4 cut(s) 197, 1107, 1164, 1173
MaeIII GTNAC 1 cut(s) 912
MfeI CAATTG 1 cut(s) 1101
MflI RGATCY 1 cut(s) 968
MhlI GDGCHC 2 cut(s) 928, 1350
MluCI AATT 7 cut(s) 119, 125, 204, 374, 440, 1101, 1185
Mly113I GGCGCC 1 cut(s) 584
MroXI GAANNNNTTC 1 cut(s) 1028
MseI TTAA 1 cut(s) 1034
MslI CAYNNNNRTG 1 cut(s) 1413
MspA1I CMGCKG 1 cut(s) 1519
MspCI CTTAAG 1 cut(s) 1033
MspI CCGG 1 cut(s) 185
MspR9I CCNGG 1 cut(s) 1212
MunI CAATTG 1 cut(s) 1101
Mva1269I GAATGC 2 cut(s) 385, 1158
MvaI CCWGG 1 cut(s) 1212
MvnI CGCG 1 cut(s) 922
MwoI GCNNNNNNNGC 6 cut(s) 414, 423, 1094, 1103, 1308, 1370
NarI GGCGCC 1 cut(s) 584
NheI GCTAGC 1 cut(s) 1106
NlaIV GGNNCC 1 cut(s) 585
NspI RCATGY 1 cut(s) 1418
PagI TCATGA 1 cut(s) 1408
PciSI GCTCTTC 1 cut(s) 1034
PctI GAATGC 2 cut(s) 385, 1158
PdmI GAANNNNTTC 1 cut(s) 1028
PfeI GAWTC 1 cut(s) 387
PflFI GACNNNGTC 1 cut(s) 191
PluTI GGCGCC 1 cut(s) 587
PshAI GACNNNNGTC 1 cut(s) 1329
Psp124BI GAGCTC 1 cut(s) 928
Psp6I CCWGG 1 cut(s) 1210
PspFI CCCAGC 1 cut(s) 1038
PspGI CCWGG 1 cut(s) 1210
PspN4I GGNNCC 1 cut(s) 585
PspPI GGNCC 1 cut(s) 187
PsuI RGATCY 1 cut(s) 968
PsyI GACNNNGTC 1 cut(s) 191
RsaI GTAC 3 cut(s) 449, 1171, 1222
RsaNI GTAC 3 cut(s) 448, 1170, 1221
RseI CAYNNNNRTG 1 cut(s) 1413
SacI GAGCTC 1 cut(s) 928
SapI GCTCTTC 1 cut(s) 1034
SaqAI TTAA 1 cut(s) 1034
Sau96I GGNCC 1 cut(s) 187
ScaI AGTACT 1 cut(s) 1171
ScrFI CCNGG 1 cut(s) 1212
SduI GDGCHC 2 cut(s) 928, 1350
SfaNI GCATC 2 cut(s) 478, 989
SfcI CTRYAG 1 cut(s) 948
SfoI GGCGCC 1 cut(s) 585
SinI GGWCC 1 cut(s) 187
SmiMI CAYNNNNRTG 1 cut(s) 1413
SmlI CTYRAG 2 cut(s) 1033, 1422
SmoI CTYRAG 2 cut(s) 1033, 1422
Sse9I AATT 7 cut(s) 119, 125, 204, 374, 440, 1101, 1185
SspDI GGCGCC 1 cut(s) 583
SspMI CTAG 4 cut(s) 197, 1107, 1164, 1173
SstI GAGCTC 1 cut(s) 928
StyD4I CCNGG 1 cut(s) 1210
TaaI ACNGT 3 cut(s) 29, 260, 1453
TaqI TCGA 9 cut(s) 70, 82, 202, 395, 638, 722, 806, 887, 961
TasI AATT 7 cut(s) 119, 125, 204, 374, 440, 1101, 1185
TatI WGTACW 3 cut(s) 447, 1169, 1220
TauI GCSGC 9 cut(s) 505, 589, 670, 673, 754, 757, 838, 841, 922
TfiI GAWTC 1 cut(s) 387
Tru1I TTAA 1 cut(s) 1034
Tru9I TTAA 1 cut(s) 1034
TscAI CASTG 4 cut(s) 1026, 1237, 1333, 1380
TseI GCWGC 6 cut(s) 322, 337, 499, 1097, 1227, 1403
TspGWI ACGGA 2 cut(s) 1148, 1503
TspRI CASTG 4 cut(s) 1026, 1237, 1333, 1380
Tth111I GACNNNGTC 1 cut(s) 191
Vha464I CTTAAG 1 cut(s) 1033
VpaK11BI GGWCC 1 cut(s) 187
XagI CCTNNNNNAGG 2 cut(s) 84, 1209
XapI RAATTY 1 cut(s) 125
XceI RCATGY 1 cut(s) 1418
XmnI GAANNNNTTC 1 cut(s) 1028
XspI CTAG 4 cut(s) 197, 1107, 1164, 1173
ZrmI AGTACT 1 cut(s) 1171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.