FvH4_5g31390

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0015929
Physical Location & Seq
Forward (+)
22277151 .. 22278589
1439 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g31390.t1

Sequence Viewer

Length: 1242 bp
ATGAAAAGCTTTCCAGCGAAACAGATGCCAGACTATGTCCGAGATCGAATTCATAATAATAATGGAAGACCACTTGGATCATATCACAATGTAAGAGTATACAGTCAACAGCGTCCTCATAGTTATCTTCTTCCCAAGAAGATCATAAGCAAGTTCAACCCTCCCAAGCAGCAGCACCAACAACGATATCATTATCCTCCTTCGAATCCTTCTAATTTGAAAGCAGGAATCTCGTCGAGTACTAGCTCGTCTTGCTATGTTTGCAATAAGAGCTTCCCATCATCGCAATTCTTGTACAGCCACATGATGAGATCACATCCCGAAAGAGGCATGAAGGGTGTATTGCCGCCGCAACAAGCAGCTCCGATGACGATGTCTGTCATCCCCTCTCAATCTCAGACGTCACAGAATGAAAGAGGCATGAATGGTGTATTGCCGCCGCAACAAGCTCCGATGATGAAGTCTGTCGTCCCCTCTCAATTATCTCAGTCATCGAACGAAAGAGGCATAAACAGTGTGTTACAGCCGCCACGAGCTCCGATCAGTCCAATGAAGTCTGTCGACGTTCCTTCTCAATCTGGCCATGGATCTCCTTCTGCATCGGATTCATCAGATGTCACAGAGCCAGATTATTGTGATCCGGTGAAGCTCTTATCAAGCTCATGGGGCAAGAAAGATCGGAGAGGCAGGACTAACAATCCTTGTGCTACTTGTGCTAGTAATGCTGCAATTGCTAGACTGCAAAAACCTAATGAAACTATGGAGGCCATTAAAAGTAGTAGCAGCATTCCTAGTACTAGTAATACTCTAATTCCCGATCAACAAAACCCTAATTTAAGTAGTTCTAGTACCACGGACAATGAGATTAGTTTGATTGATCATAAGATGATGAAGATGACGATGATGACAAAGAAATACAAATGCAATGTCTGCAACAAGGAGTTTGACACCGGTCAGGCACTAGGAGGGCACAAGTCAAGTAGTGCTTGCAAGGCAGTGAGAGAAACCAAACTATTAGCTCCAGCAGCTCATGATTATCATGGTCCTCAAATAGTGGGAGTATCCACGACGAAGAAGACAATGGCTGATGTAGAAGTGTCCTGCACGAAGAAGACAATGGATGATGACATTGAAGAGGGTGAGATTGTAGAAGATGGTGAGATCACAGATGAAGAAGGAATTCAGCGAATAAGTCATAAAATATTTGATTTTGATCTCAATGAACTTCCTCCAGAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

414

Amino Acids

45.5

Weight (kDa)

8.71

Isoelectric Point (pI)

62.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_6 PF13912 306 - 327 1.6e-08 C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015929)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26940 AT5G56200
fragaria_vesca FvH4_5g31390
malus_domestica MD03G1110900.v1.1 MD11G1124800.v1.1
prunus_persica Prupe.6G093500_v2.0.a1
rosa_laevigata RLG00000001711
rosa_multiflora Rmu_sc0000534.1_g000007
rosa_rugosa Rorug07G0239000
rosa_samantha Rh7AG386400 Rh7BG373000 Rh7CG405700 Rh7DG385100
rosa_wichuraiana Rw0G018440 Rw7G032440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 404
AccI GTMKAC 2 cut(s) 99, 561
AciI CCGC 5 cut(s) 347, 350, 437, 440, 527
AclWI GGATC 3 cut(s) 85, 595, 632
AcoI YGGCCR 1 cut(s) 580
AcsI RAATTY 2 cut(s) 48, 1179
AcyI GRCGYC 1 cut(s) 401
AfaI GTAC 4 cut(s) 241, 296, 796, 850
AfiI CCNNNNNNNGG 1 cut(s) 326
AgeI ACCGGT 1 cut(s) 950
AgsI TTSAA 3 cut(s) 157, 220, 1133
AhlI ACTAGT 1 cut(s) 797
Alw21I GWGCWC 1 cut(s) 538
AlwI GGATC 3 cut(s) 85, 595, 632
AoxI GGCC 2 cut(s) 580, 765
ApeKI GCWGC 6 cut(s) 169, 172, 359, 725, 783, 1025
ApoI RAATTY 2 cut(s) 48, 1179
ArsI GACNNNNNNTTYG 2 cut(s) 912, 944
AsiGI ACCGGT 1 cut(s) 950
Asp700I GAANNNNTTC 1 cut(s) 1179
AspS9I GGNCC 1 cut(s) 1043
AsuHPI GGTGA 3 cut(s) 655, 1151, 1169
AsuII TTCGAA 1 cut(s) 203
AvaII GGWCC 1 cut(s) 1043
BaeGI GKGCMC 1 cut(s) 972
BalI TGGCCA 1 cut(s) 582
BanII GRGCYC 1 cut(s) 538
BauI CACGAG 1 cut(s) 531
BbsI GAAGAC 3 cut(s) 73, 1082, 1118
Bbv12I GWGCWC 1 cut(s) 538
BbvI GCAGC 6 cut(s) 181, 184, 371, 712, 795, 1037
BccI CCATC 2 cut(s) 286, 1148
BcgI CGANNNNNNTGC 4 cut(s) 7, 41, 213, 247
BciVI GTATCC 1 cut(s) 1072
BclI TGATCA 1 cut(s) 877
BcuI ACTAGT 1 cut(s) 797
BfaI CTAG 7 cut(s) 243, 717, 735, 792, 798, 846, 962
BfuI GTATCC 1 cut(s) 1072
BmcAI AGTACT 2 cut(s) 241, 796
Bme18I GGWCC 1 cut(s) 1043
BmgT120I GGNCC 1 cut(s) 1043
BmsI GCATC 2 cut(s) 15, 608
BoxI GACNNNNGTC 1 cut(s) 951
BpiI GAAGAC 3 cut(s) 73, 1082, 1118
BpmI CTGGAG 2 cut(s) 1005, 1215
Bpu14I TTCGAA 1 cut(s) 203
BsaBI GATNNNNATC 1 cut(s) 1212
BsaHI GRCGYC 1 cut(s) 401
BsaJI CCNNGG 2 cut(s) 583, 852
BsaWI WCCGGW 2 cut(s) 640, 950
Bsc4I CCNNNNNNNGG 1 cut(s) 326
Bse118I RCCGGY 1 cut(s) 950
Bse3DI GCAATG 1 cut(s) 931
Bse8I GATNNNNATC 1 cut(s) 1212
BseDI CCNNGG 2 cut(s) 583, 852
BseGI GGATG 3 cut(s) 316, 381, 1126
BseJI GATNNNNATC 1 cut(s) 1212
BseLI CCNNNNNNNGG 1 cut(s) 326
BseMI GCAATG 1 cut(s) 931
BseMII CTCAG 2 cut(s) 410, 500
BseSI GKGCMC 1 cut(s) 972
BseXI GCAGC 6 cut(s) 181, 184, 371, 712, 795, 1037
BsgI GTGCAG 1 cut(s) 1087
BshFI GGCC 2 cut(s) 582, 767
BshTI ACCGGT 1 cut(s) 950
BsiHKAI GWGCWC 1 cut(s) 538
BsiSI CCGG 2 cut(s) 641, 951
BslFI GGGAC 1 cut(s) 455
BslI CCNNNNNNNGG 1 cut(s) 326
BsmFI GGGAC 1 cut(s) 455
BsmI GAATGC 1 cut(s) 786
BsnI GGCC 2 cut(s) 582, 767
Bsp119I TTCGAA 1 cut(s) 203
Bsp1286I GDGCHC 2 cut(s) 538, 972
Bsp1407I TGTACA 1 cut(s) 294
Bsp19I CCATGG 1 cut(s) 583
BspACI CCGC 5 cut(s) 347, 350, 437, 440, 527
BspANI GGCC 2 cut(s) 582, 767
BspCNI CTCAG 2 cut(s) 409, 499
BspHI TCATGA 1 cut(s) 1030
BspPI GGATC 3 cut(s) 85, 595, 632
BspT104I TTCGAA 1 cut(s) 203
BsrDI GCAATG 1 cut(s) 931
BsrFI RCCGGY 1 cut(s) 950
BsrGI TGTACA 1 cut(s) 294
BssAI RCCGGY 1 cut(s) 950
BssECI CCNNGG 2 cut(s) 583, 852
BssNAI GTATAC 1 cut(s) 100
BssNI GRCGYC 1 cut(s) 401
BssSI CACGAG 1 cut(s) 531
BssT1I CCWWGG 1 cut(s) 583
Bst1107I GTATAC 1 cut(s) 100
Bst2BI CACGAG 1 cut(s) 531
Bst4CI ACNGT 2 cut(s) 104, 515
Bst6I CTCTTC 1 cut(s) 1128
BstACI GRCGYC 1 cut(s) 401
BstAPI GCANNNNNTGC 1 cut(s) 930
BstAUI TGTACA 1 cut(s) 294
BstBI TTCGAA 1 cut(s) 203
BstC8I GCNNGC 1 cut(s) 988
BstDEI CTNAG 2 cut(s) 396, 486
BstDSI CCRYGG 2 cut(s) 583, 852
BstF5I GGATG 3 cut(s) 316, 381, 1126
BstPAI GACNNNNGTC 1 cut(s) 951
BstSLI GKGCMC 1 cut(s) 972
BstV1I GCAGC 6 cut(s) 181, 184, 371, 712, 795, 1037
BstV2I GAAGAC 3 cut(s) 73, 1082, 1118
BstX2I RGATCY 1 cut(s) 587
BstYI RGATCY 1 cut(s) 587
BstZ17I GTATAC 1 cut(s) 100
BsuI GTATCC 1 cut(s) 1072
BsuRI GGCC 2 cut(s) 582, 767
BtgI CCRYGG 2 cut(s) 583, 852
BtgZI GCGATG 1 cut(s) 267
BtsCI GGATG 3 cut(s) 316, 381, 1126
BtsI GCAGTG 1 cut(s) 1002
BtsIMutI CAGTG 2 cut(s) 520, 1002
Cac8I GCNNGC 1 cut(s) 988
CciI TCATGA 1 cut(s) 1030
Cfr10I RCCGGY 1 cut(s) 950
Cfr13I GGNCC 1 cut(s) 1043
CseI GACGC 1 cut(s) 101
Csp6I GTAC 4 cut(s) 240, 295, 795, 849
CspAI ACCGGT 1 cut(s) 950
CviAII CATG 7 cut(s) 304, 331, 421, 584, 663, 1031, 1040
CviQI GTAC 4 cut(s) 240, 295, 795, 849
DdeI CTNAG 2 cut(s) 396, 486
EaeI YGGCCR 1 cut(s) 580
Eam1104I CTCTTC 1 cut(s) 1128
EarI CTCTTC 1 cut(s) 1128
Ecl136II GAGCTC 1 cut(s) 536
Eco130I CCWWGG 1 cut(s) 583
Eco24I GRGCYC 1 cut(s) 538
Eco32I GATATC 1 cut(s) 188
Eco47I GGWCC 1 cut(s) 1043
Eco53kI GAGCTC 1 cut(s) 536
EcoICRI GAGCTC 1 cut(s) 536
EcoRI GAATTC 2 cut(s) 48, 1179
EcoRV GATATC 1 cut(s) 188
EcoT14I CCWWGG 1 cut(s) 583
EcoT38I GRGCYC 1 cut(s) 538
ErhI CCWWGG 1 cut(s) 583
FaeI CATG 7 cut(s) 307, 334, 424, 587, 666, 1034, 1043
FalI AAGNNNNNCTT 2 cut(s) 970, 1002
FaqI GGGAC 1 cut(s) 455
FatI CATG 7 cut(s) 303, 330, 420, 583, 662, 1030, 1039
FbaI TGATCA 1 cut(s) 877
FblI GTMKAC 2 cut(s) 99, 561
FokI GGATG 3 cut(s) 303, 368, 1133
FriOI GRGCYC 1 cut(s) 538
FspBI CTAG 7 cut(s) 243, 717, 735, 792, 798, 846, 962
GsuI CTGGAG 2 cut(s) 1005, 1215
HaeIII GGCC 2 cut(s) 582, 767
HapII CCGG 2 cut(s) 641, 951
HgaI GACGC 1 cut(s) 101
Hin1I GRCGYC 1 cut(s) 401
Hin1II CATG 7 cut(s) 307, 334, 424, 587, 666, 1034, 1043
HincII GTYRAC 2 cut(s) 107, 562
HindII GTYRAC 2 cut(s) 107, 562
HindIII AAGCTT 1 cut(s) 7
HinfI GANTC 3 cut(s) 205, 228, 605
HpaII CCGG 2 cut(s) 641, 951
HphI GGTGA 3 cut(s) 655, 1151, 1169
Hpy166II GTNNAC 3 cut(s) 100, 107, 562
Hpy188I TCNGA 8 cut(s) 41, 366, 399, 453, 540, 604, 613, 681
Hpy188III TCNNGA 4 cut(s) 320, 815, 1031, 1232
Hpy8I GTNNAC 3 cut(s) 100, 107, 562
Hpy99I CGWCG 3 cut(s) 238, 566, 1072
HpyAV CCTTC 6 cut(s) 210, 219, 328, 579, 603, 1169
HpyCH4III ACNGT 2 cut(s) 104, 515
HpyCH4IV ACGT 2 cut(s) 401, 564
HpyCH4V TGCA 8 cut(s) 264, 599, 728, 742, 924, 933, 990, 1104
HpyF3I CTNAG 2 cut(s) 396, 486
HpySE526I ACGT 2 cut(s) 401, 564
Hsp92I GRCGYC 1 cut(s) 401
Hsp92II CATG 7 cut(s) 307, 334, 424, 587, 666, 1034, 1043
Ksp22I TGATCA 1 cut(s) 877
LmnI GCTCC 4 cut(s) 367, 454, 541, 1024
Lsp1109I GCAGC 6 cut(s) 181, 184, 371, 712, 795, 1037
LweI GCATC 2 cut(s) 15, 608
MaeI CTAG 7 cut(s) 243, 717, 735, 792, 798, 846, 962
MaeII ACGT 2 cut(s) 401, 564
MaeIII GTNAC 3 cut(s) 402, 519, 616
MfeI CAATTG 1 cut(s) 729
MflI RGATCY 1 cut(s) 587
MhlI GDGCHC 2 cut(s) 538, 972
MlsI TGGCCA 1 cut(s) 582
MluCI AATT 8 cut(s) 48, 214, 287, 479, 729, 810, 832, 1179
MluNI TGGCCA 1 cut(s) 582
Mox20I TGGCCA 1 cut(s) 582
MroXI GAANNNNTTC 1 cut(s) 1179
MscI TGGCCA 1 cut(s) 582
MseI TTAA 2 cut(s) 771, 836
Msp20I TGGCCA 1 cut(s) 582
MspI CCGG 2 cut(s) 641, 951
MunI CAATTG 1 cut(s) 729
Mva1269I GAATGC 1 cut(s) 786
NcoI CCATGG 1 cut(s) 583
NlaIII CATG 7 cut(s) 307, 334, 424, 587, 666, 1034, 1043
NmuCI GTSAC 2 cut(s) 402, 616
NspV TTCGAA 1 cut(s) 203
PagI TCATGA 1 cut(s) 1030
PctI GAATGC 1 cut(s) 786
PdmI GAANNNNTTC 1 cut(s) 1179
PfeI GAWTC 3 cut(s) 205, 228, 605
PflFI GACNNNGTC 2 cut(s) 35, 373
PinAI ACCGGT 1 cut(s) 950
PshAI GACNNNNGTC 1 cut(s) 951
Psp124BI GAGCTC 1 cut(s) 538
PspPI GGNCC 1 cut(s) 1043
PsuI RGATCY 1 cut(s) 587
PsyI GACNNNGTC 2 cut(s) 35, 373
RsaI GTAC 4 cut(s) 241, 296, 796, 850
RsaNI GTAC 4 cut(s) 240, 295, 795, 849
SacI GAGCTC 1 cut(s) 538
SalI GTCGAC 1 cut(s) 560
SaqAI TTAA 2 cut(s) 771, 836
Sau96I GGNCC 1 cut(s) 1043
ScaI AGTACT 2 cut(s) 241, 796
SduI GDGCHC 2 cut(s) 538, 972
SfaNI GCATC 2 cut(s) 15, 608
SfuI TTCGAA 1 cut(s) 203
SinI GGWCC 1 cut(s) 1043
SpeI ACTAGT 1 cut(s) 797
Sse9I AATT 8 cut(s) 48, 214, 287, 479, 729, 810, 832, 1179
SsiI CCGC 5 cut(s) 347, 350, 437, 440, 527
SspI AATATT 1 cut(s) 1203
SspMI CTAG 7 cut(s) 243, 717, 735, 792, 798, 846, 962
SstI GAGCTC 1 cut(s) 538
StyI CCWWGG 1 cut(s) 583
TaaI ACNGT 2 cut(s) 104, 515
TaiI ACGT 2 cut(s) 404, 567
TaqI TCGA 5 cut(s) 46, 203, 236, 494, 561
TasI AATT 8 cut(s) 48, 214, 287, 479, 729, 810, 832, 1179
TatI WGTACW 3 cut(s) 239, 294, 794
TauI GCSGC 5 cut(s) 349, 352, 439, 442, 529
TfiI GAWTC 3 cut(s) 205, 228, 605
Tru1I TTAA 2 cut(s) 771, 836
Tru9I TTAA 2 cut(s) 771, 836
TscAI CASTG 2 cut(s) 520, 1002
TseFI GTSAC 2 cut(s) 402, 616
TseI GCWGC 6 cut(s) 169, 172, 359, 725, 783, 1025
Tsp45I GTSAC 2 cut(s) 402, 616
TspGWI ACGGA 1 cut(s) 869
TspRI CASTG 2 cut(s) 520, 1002
Tth111I GACNNNGTC 2 cut(s) 35, 373
VpaK11BI GGWCC 1 cut(s) 1043
XapI RAATTY 2 cut(s) 48, 1179
XmiI GTMKAC 2 cut(s) 99, 561
XmnI GAANNNNTTC 1 cut(s) 1179
XspI CTAG 7 cut(s) 243, 717, 735, 792, 798, 846, 962
ZraI GACGTC 1 cut(s) 402
ZrmI AGTACT 2 cut(s) 241, 796
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.