Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0015929

Physical Location & Seq

Genomic Coordinates Forward (+)

11502299 .. 11503918

Gene Structure 1620 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1124800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1620 bp

ATGAAAGACTTCCAAGAGAAAAACGAGCACCTAAGAGAAGATCATGAAGAAGAAGAAAATCAAGAAATCGTGGATGATGATGTGCATTCACAAGAGACTGAAGAACAAGTTCCGGTAAGTGACGATGATGATCATAAGGGTAAACAAGTAGTGCTAGACAGTGACGTTGTTCATCATCGAAGCGGAGATCGGGTTTGTGAGCAATGTGGGAAGATATTTCAAAATGGAAAAGCTTTAGGAGGTCACAGAAAAGTTCACTTTAATCAATCTCTTCTTCCCAAGAAGAACAAAGCATTGTTTAAGCCGAAGAAGAAACATGTTGCTTCCAATGAAGGCGGCGGCAGCAGTGAAGTCTCGTGCTATGTTTGTAAAAAGGATTTTCCATCAATCAAATCCTTGCACGGACACATGAGACTCCACCGCGAAAGAGATTGGAAAGGTGTGAGACCTCCGGGGGCTGTTCAGCCTCCTTCGGAAGAGAGCAAATCTTCTTCGTACGAAAATGACTCCAGTGATGATGACAATGATGATGGTGATGGTGACAGTAGTTTTTCCGATCACACCATAGAGACAGACAACGATGCAGCAAAATTTTTAGTAAACTGGATGAAGATCGAACAAAGACGCAGGATTGCTAACCAAAGAGATCCTAATGGTGAAGACAAAGTTCGTGAATTCAGAGGGAAGAAGCTAATAGAAGAGTCACCAGTTGGATACAAAGGTAACCCTTCTTCCAAGAACATGAAATTTGATGGTAGAAGTAGTAAGAAAATTACCATGGAGGGAAGTAAAAGTTTTGGAGGTACAAAACCCAAAAAATATATTGGCTTGCTCGATCAAACCCTCAACCAGATTTCAAGCAAGCCTCAAGAGTTTAGGTTCAGTAGATCAGATGCAACGATGAGTGACATGAACGAATCGGGGTTCAGTAGTAAGTATGCAGCGGACCAAGTTAGTGAATCTGCATCGGAGAAGGCAATAGAAGAGTCACCTCGTGGATACAAAGGCAATACTCCATTGAGGATCAAGCTGAAACTTGATGGTAGAAGTAATAAAACTCTGGATAAAAGTAGAAGTTCTCGGAGTGTGTCTTTTGTGTTGAATAAGTTAAGTGTTGGAGGTAAAGAAAAGATTTCTGTGGAAGAAGATGACGATGATGAGAATGCTGATCAGATTAGTTGGAAGGTGAAGTCGAAGAAGGCGATGATGAAGGGAGTTTCAAAAACAGATAAAAAGCCAATCAAAGACACTGCTTTACTCGACCAAGCCCGCTACCAGATTCCATCGAGAACTCAAGAATTTGGTGCTACTTATGCTGAAAGGGGAAACTACAATGGCTCTAGTGCTACCAGTAACCAAGTATTTGAAAGAGCAGAAGAAGCTGAAGCAGTGGAGCAGGAGACCAAACAGTTTGTATGCAACATCTGCCCCTGCAAGTTCTCAACAGGTCAGGCTCTGGGAGGCCACAAGAGAGGTCACAACTATAGAATGGCAGTGGAAAATGCTCCGGGGAAAGCAGAAGTAGCACCGGTGGATGAAGAAGACCGTGAGATCAGTATAGTTCCTGAAAAACTAGACTTGGATCTCAATCAACTTCCTTACGAATCGAACGATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0055046 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

540

Amino Acids

60.5

Weight (kDa)

5.87

Isoelectric Point (pI)

47.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015929)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26940 AT5G56200
fragaria_vesca	FvH4_5g31390
malus_domestica	MD03G1110900.v1.1 MD11G1124800.v1.1
prunus_persica	Prupe.6G093500_v2.0.a1
rosa_laevigata	RLG00000001711
rosa_multiflora	Rmu_sc0000534.1_g000007
rosa_rugosa	Rorug07G0239000
rosa_samantha	Rh7AG386400 Rh7BG373000 Rh7CG405700 Rh7DG385100
rosa_wichuraiana	Rw0G018440 Rw7G032440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	423
AciI	CCGC	6 cut(s)	183, 336, 339, 421, 944, 1270
AclWI	GGATC	3 cut(s)	641, 1031, 1590
AcsI	RAATTY	4 cut(s)	590, 674, 746, 1298
AcuI	CTGAAG	2 cut(s)	120, 1404
AdeI	CACNNNGTG	1 cut(s)	995
AfaI	GTAC	2 cut(s)	497, 805
AflIII	ACRYGT	1 cut(s)	316
AgeI	ACCGGT	1 cut(s)	1528
AgsI	TTSAA	5 cut(s)	221, 858, 1102, 1221, 1367
AluBI	AGCT	4 cut(s)	233, 691, 1030, 1382
AluI	AGCT	4 cut(s)	233, 691, 1030, 1382
Alw21I	GWGCWC	1 cut(s)	30
Alw26I	GTCTC	6 cut(s)	89, 358, 406, 439, 563, 1394
AlwI	GGATC	3 cut(s)	641, 1031, 1590
AlwNI	CAGNNNCTG	1 cut(s)	1456
AoxI	GGCC	1 cut(s)	1462
ApeKI	GCWGC	3 cut(s)	342, 584, 941
ApoI	RAATTY	4 cut(s)	590, 674, 746, 1298
AsiGI	ACCGGT	1 cut(s)	1528
Asp700I	GAANNNNTTC	2 cut(s)	8, 108
AspS9I	GGNCC	1 cut(s)	946
AsuC2I	CCSGG	2 cut(s)	453, 1509
AsuHPI	GGTGA	6 cut(s)	545, 551, 668, 696, 981, 1198
AvaII	GGWCC	1 cut(s)	946
BaeI	ACNNNNGTAYC	2 cut(s)	706, 739
BarI	GAAGNNNNNNTAC	2 cut(s)	715, 747
BauI	CACGAG	2 cut(s)	355, 993
BbsI	GAAGAC	2 cut(s)	666, 1548
Bbv12I	GWGCWC	1 cut(s)	30
BbvI	GCAGC	3 cut(s)	354, 596, 953
BccI	CCATC	6 cut(s)	391, 524, 530, 746, 1034, 1291
BciVI	GTATCC	2 cut(s)	707, 992
BclI	TGATCA	2 cut(s)	130, 1168
BcnI	CCSGG	2 cut(s)	453, 1509
BcoDI	GTCTC	6 cut(s)	89, 358, 406, 439, 563, 1394
BfaI	CTAG	3 cut(s)	155, 1341, 1574
BfmI	CTRYAG	1 cut(s)	1483
BfuI	GTATCC	2 cut(s)	707, 992
BisI	GCNGC	5 cut(s)	337, 340, 343, 585, 942
BlsI	GCNGC	5 cut(s)	338, 341, 344, 586, 943
Bme1390I	CCNGG	2 cut(s)	453, 1509
Bme18I	GGWCC	1 cut(s)	946
BmgT120I	GGNCC	1 cut(s)	946
BmrFI	CCNGG	2 cut(s)	453, 1509
BmsI	GCATC	3 cut(s)	571, 883, 974
BpiI	GAAGAC	2 cut(s)	666, 1548
BpmI	CTGGAG	1 cut(s)	493
BpuEI	CTTGAG	2 cut(s)	852, 1278
BpuMI	CCSGG	2 cut(s)	453, 1509
BsaBI	GATNNNNATC	3 cut(s)	129, 611, 1587
BsaI	GGTCTC	2 cut(s)	439, 1394
BsaJI	CCNNGG	3 cut(s)	452, 777, 1508
BsaWI	WCCGGW	2 cut(s)	112, 1528
BsaXI	ACNNNNNCTCC	2 cut(s)	177, 207
Bse118I	RCCGGY	1 cut(s)	1528
Bse1I	ACTGG	4 cut(s)	510, 608, 707, 1350
Bse3DI	GCAATG	1 cut(s)	209
Bse8I	GATNNNNATC	3 cut(s)	129, 611, 1587
BseDI	CCNNGG	3 cut(s)	452, 777, 1508
BseGI	GGATG	3 cut(s)	79, 612, 1540
BseJI	GATNNNNATC	3 cut(s)	129, 611, 1587
BseMI	GCAATG	1 cut(s)	209
BseNI	ACTGG	4 cut(s)	510, 608, 707, 1350
BseXI	GCAGC	3 cut(s)	354, 596, 953
Bsh1236I	CGCG	1 cut(s)	423
BshFI	GGCC	1 cut(s)	1464
BshTI	ACCGGT	1 cut(s)	1528
BsiHKAI	GWGCWC	1 cut(s)	30
BsiSI	CCGG	4 cut(s)	113, 452, 1508, 1529
BsiWI	CGTACG	1 cut(s)	495
BsmAI	GTCTC	6 cut(s)	89, 358, 406, 439, 563, 1394
BsmI	GAATGC	2 cut(s)	85, 1168
BsnI	GGCC	1 cut(s)	1464
Bso31I	GGTCTC	2 cut(s)	439, 1394
Bsp1286I	GDGCHC	1 cut(s)	30
Bsp19I	CCATGG	1 cut(s)	777
BspACI	CCGC	6 cut(s)	183, 336, 339, 421, 944, 1270
BspANI	GGCC	1 cut(s)	1464
BspFNI	CGCG	1 cut(s)	423
BspHI	TCATGA	1 cut(s)	43
BspPI	GGATC	3 cut(s)	641, 1031, 1590
BspTNI	GGTCTC	2 cut(s)	439, 1394
BsrDI	GCAATG	1 cut(s)	209
BsrFI	RCCGGY	1 cut(s)	1528
BsrI	ACTGG	4 cut(s)	510, 608, 707, 1350
BssAI	RCCGGY	1 cut(s)	1528
BssECI	CCNNGG	3 cut(s)	452, 777, 1508
BssSI	CACGAG	2 cut(s)	355, 993
BssT1I	CCWWGG	1 cut(s)	777
Bst2BI	CACGAG	2 cut(s)	355, 993
Bst4CI	ACNGT	4 cut(s)	161, 545, 1410, 1547
Bst6I	CTCTTC	4 cut(s)	276, 471, 693, 978
BstAPI	GCANNNNNTGC	1 cut(s)	1425
BstC8I	GCNNGC	3 cut(s)	830, 863, 1270
BstDEI	CTNAG	1 cut(s)	32
BstDSI	CCRYGG	1 cut(s)	777
BstEII	GGTNACC	1 cut(s)	722
BstF5I	GGATG	3 cut(s)	79, 612, 1540
BstFNI	CGCG	1 cut(s)	423
BstMAI	GTCTC	6 cut(s)	89, 358, 406, 439, 563, 1394
BstMWI	GCNNNNNNNGC	5 cut(s)	342, 1313, 1379, 1425, 1523
BstNSI	RCATGY	1 cut(s)	320
BstPI	GGTNACC	1 cut(s)	722
BstSCI	CCNGG	2 cut(s)	451, 1507
BstSFI	CTRYAG	1 cut(s)	1483
BstUI	CGCG	1 cut(s)	423
BstV1I	GCAGC	3 cut(s)	354, 596, 953
BstV2I	GAAGAC	2 cut(s)	666, 1548
BstX2I	RGATCY	2 cut(s)	646, 1582
BstYI	RGATCY	2 cut(s)	646, 1582
BsuI	GTATCC	2 cut(s)	707, 992
BsuRI	GGCC	1 cut(s)	1464
BtgI	CCRYGG	1 cut(s)	777
BtgZI	GCGATG	1 cut(s)	1217
BtsCI	GGATG	3 cut(s)	79, 612, 1540
BtsI	GCAGTG	4 cut(s)	352, 1248, 1395, 1500
BtsIMutI	CAGTG	6 cut(s)	166, 352, 517, 1248, 1395, 1500
Cac8I	GCNNGC	3 cut(s)	830, 863, 1270
CaiI	CAGNNNCTG	1 cut(s)	1456
CciI	TCATGA	1 cut(s)	43
Cfr10I	RCCGGY	1 cut(s)	1528
Cfr13I	GGNCC	1 cut(s)	946
CseI	GACGC	1 cut(s)	633
Csp6I	GTAC	2 cut(s)	496, 804
CspAI	ACCGGT	1 cut(s)	1528
CviAII	CATG	6 cut(s)	44, 317, 409, 742, 778, 910
CviQI	GTAC	2 cut(s)	496, 804
DdeI	CTNAG	1 cut(s)	32
DraIII	CACNNNGTG	1 cut(s)	995
Eam1104I	CTCTTC	4 cut(s)	276, 471, 693, 978
EarI	CTCTTC	4 cut(s)	276, 471, 693, 978
Eco130I	CCWWGG	1 cut(s)	777
Eco31I	GGTCTC	2 cut(s)	439, 1394
Eco47I	GGWCC	1 cut(s)	946
Eco57I	CTGAAG	2 cut(s)	120, 1404
Eco91I	GGTNACC	1 cut(s)	722
EcoO65I	GGTNACC	1 cut(s)	722
EcoRI	GAATTC	1 cut(s)	674
EcoT14I	CCWWGG	1 cut(s)	777
ErhI	CCWWGG	1 cut(s)	777
FaeI	CATG	6 cut(s)	47, 320, 412, 745, 781, 913
FatI	CATG	6 cut(s)	43, 316, 408, 741, 777, 909
FauI	CCCGC	1 cut(s)	1277
FbaI	TGATCA	2 cut(s)	130, 1168
Fnu4HI	GCNGC	5 cut(s)	337, 340, 343, 585, 942
FokI	GGATG	3 cut(s)	86, 619, 1547
Fsp4HI	GCNGC	5 cut(s)	337, 340, 343, 585, 942
FspBI	CTAG	3 cut(s)	155, 1341, 1574
GluI	GCNGC	5 cut(s)	337, 340, 343, 585, 942
GsuI	CTGGAG	1 cut(s)	493
HaeIII	GGCC	1 cut(s)	1464
HapII	CCGG	4 cut(s)	113, 452, 1508, 1529
HgaI	GACGC	1 cut(s)	633
Hin1II	CATG	6 cut(s)	47, 320, 412, 745, 781, 913
HindIII	AAGCTT	1 cut(s)	231
HinfI	GANTC	8 cut(s)	414, 506, 701, 917, 959, 986, 1279, 1604
HpaII	CCGG	4 cut(s)	113, 452, 1508, 1529
HphI	GGTGA	6 cut(s)	545, 551, 668, 696, 981, 1198
Hpy166II	GTNNAC	3 cut(s)	143, 256, 601
Hpy188I	TCNGA	7 cut(s)	475, 556, 680, 892, 970, 1083, 1173
Hpy188III	TCNNGA	8 cut(s)	44, 62, 671, 869, 1061, 1287, 1295, 1565
Hpy8I	GTNNAC	3 cut(s)	143, 256, 601
HpyAV	CCTTC	7 cut(s)	326, 480, 738, 967, 1177, 1192, 1204
HpyCH4III	ACNGT	4 cut(s)	161, 545, 1410, 1547
HpyCH4IV	ACGT	1 cut(s)	165
HpyCH4V	TGCA	8 cut(s)	85, 400, 584, 896, 941, 965, 1419, 1434
HpyF10VI	GCNNNNNNNGC	5 cut(s)	342, 1313, 1379, 1425, 1523
HpyF3I	CTNAG	1 cut(s)	32
HpySE526I	ACGT	1 cut(s)	165
Hsp92II	CATG	6 cut(s)	47, 320, 412, 745, 781, 913
Ksp22I	TGATCA	2 cut(s)	130, 1168
LmnI	GCTCC	2 cut(s)	1393, 1510
Lsp1109I	GCAGC	3 cut(s)	354, 596, 953
LweI	GCATC	3 cut(s)	571, 883, 974
MaeI	CTAG	3 cut(s)	155, 1341, 1574
MaeII	ACGT	1 cut(s)	165
MflI	RGATCY	2 cut(s)	646, 1582
MhlI	GDGCHC	1 cut(s)	30
MluCI	AATT	5 cut(s)	590, 674, 746, 771, 1298
MlyI	GAGTC	4 cut(s)	408, 500, 710, 995
MmeI	TCCRAC	3 cut(s)	691, 1096, 1160
MroXI	GAANNNNTTC	2 cut(s)	8, 108
MseI	TTAA	3 cut(s)	261, 300, 1109
MspA1I	CMGCKG	1 cut(s)	944
MspI	CCGG	4 cut(s)	113, 452, 1508, 1529
MspR9I	CCNGG	2 cut(s)	453, 1509
Mva1269I	GAATGC	2 cut(s)	85, 1168
MvnI	CGCG	1 cut(s)	423
MwoI	GCNNNNNNNGC	5 cut(s)	342, 1313, 1379, 1425, 1523
NciI	CCSGG	2 cut(s)	453, 1509
NcoI	CCATGG	1 cut(s)	777
NlaIII	CATG	6 cut(s)	47, 320, 412, 745, 781, 913
NmuCI	GTSAC	8 cut(s)	119, 161, 242, 539, 702, 905, 987, 1475
NspI	RCATGY	1 cut(s)	320
PagI	TCATGA	1 cut(s)	43
PciI	ACATGT	1 cut(s)	316
PcsI	WCGNNNNNNNCGW	2 cut(s)	1199, 1608
PctI	GAATGC	2 cut(s)	85, 1168
PdmI	GAANNNNTTC	2 cut(s)	8, 108
PfeI	GAWTC	4 cut(s)	917, 959, 1279, 1604
Pfl23II	CGTACG	1 cut(s)	495
PinAI	ACCGGT	1 cut(s)	1528
PkrI	GCNGC	5 cut(s)	338, 341, 344, 586, 943
PleI	GAGTC	4 cut(s)	408, 500, 709, 994
PpsI	GAGTC	4 cut(s)	408, 500, 709, 994
PscI	ACATGT	1 cut(s)	316
PspEI	GGTNACC	1 cut(s)	722
PspLI	CGTACG	1 cut(s)	495
PspPI	GGNCC	1 cut(s)	946
PstNI	CAGNNNCTG	1 cut(s)	1456
PsuI	RGATCY	2 cut(s)	646, 1582
RsaI	GTAC	2 cut(s)	497, 805
RsaNI	GTAC	2 cut(s)	496, 804
SaqAI	TTAA	3 cut(s)	261, 300, 1109
SatI	GCNGC	5 cut(s)	337, 340, 343, 585, 942
Sau96I	GGNCC	1 cut(s)	946
SchI	GAGTC	4 cut(s)	408, 500, 710, 995
ScrFI	CCNGG	2 cut(s)	453, 1509
SduI	GDGCHC	1 cut(s)	30
SfaNI	GCATC	3 cut(s)	571, 883, 974
SfcI	CTRYAG	1 cut(s)	1483
SgrAI	CRCCGGYG	1 cut(s)	1528
SinI	GGWCC	1 cut(s)	946
SmlI	CTYRAG	2 cut(s)	867, 1293
SmoI	CTYRAG	2 cut(s)	867, 1293
Sse9I	AATT	5 cut(s)	590, 674, 746, 771, 1298
SsiI	CCGC	6 cut(s)	183, 336, 339, 421, 944, 1270
SspMI	CTAG	3 cut(s)	155, 1341, 1574
StyD4I	CCNGG	2 cut(s)	451, 1507
StyI	CCWWGG	1 cut(s)	777
TaaI	ACNGT	4 cut(s)	161, 545, 1410, 1547
TaiI	ACGT	1 cut(s)	168
TaqI	TCGA	7 cut(s)	178, 615, 834, 1193, 1260, 1286, 1607
TasI	AATT	5 cut(s)	590, 674, 746, 771, 1298
TauI	GCSGC	2 cut(s)	339, 342
TfiI	GAWTC	4 cut(s)	917, 959, 1279, 1604
Tru1I	TTAA	3 cut(s)	261, 300, 1109
Tru9I	TTAA	3 cut(s)	261, 300, 1109
TscAI	CASTG	6 cut(s)	166, 352, 517, 1255, 1395, 1500
TseFI	GTSAC	8 cut(s)	119, 161, 242, 539, 702, 905, 987, 1475
TseI	GCWGC	3 cut(s)	342, 584, 941
Tsp45I	GTSAC	8 cut(s)	119, 161, 242, 539, 702, 905, 987, 1475
TspDTI	ATGAA	9 cut(s)	17, 60, 161, 345, 623, 758, 926, 1223, 1551
TspGWI	ACGGA	1 cut(s)	417
TspRI	CASTG	6 cut(s)	166, 352, 517, 1255, 1395, 1500
VpaK11BI	GGWCC	1 cut(s)	946
XapI	RAATTY	4 cut(s)	590, 674, 746, 1298
XceI	RCATGY	1 cut(s)	320
XmnI	GAANNNNTTC	2 cut(s)	8, 108
XspI	CTAG	3 cut(s)	155, 1341, 1574

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.