AT5G56200

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0015929
Physical Location & Seq
Forward (+)
22747478 .. 22749427
1950 bp
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UTR
Exon/CDS
Intron
AT5G56200.1

Sequence Viewer

Length: 1482 bp
ATGGACCAATTACGAGGTTACAAAACCAACTGTGGATTCTCACTTGGGAAACCGAGATTCGGATCTATTAAGGTTAAAATCCCAAGGATCAAACCTGAGATAGAAGAAGACCAAGTAGAAGAAGATGATGAAGCTAAAAACATCGGTCTCGAGGAAGAGGAAAATGATCATGAAGCTAAGAGTATGGATCTAGAGCAAGGAGATGTGGAAGAAGAAGAAGGAGAAGAGAAAAAACATATATGTTGTGAATGTGGTAAAAGGTTTGTGTCAGGTAAAGCTTTAGGAGGTCATAAACGGATTCATGTGCTCGAAACTCGTAAATTCTCAATGATGAGACCAAAGATGGTGTCTGGTATGGTTGGTAGATCTGAAAGAGGTGACTTAGAAGTGGCTTGTTGTGTTTGTTACAAGAAGTTTACATCAATGAAGGCTTTATATGGACACATGAGGTTTCATCCAGACAGAGGTTGGAAAGGTGTTTTGCCTCCTCCTCCTCTTCTTCCTCATCCACTTGGTAATTCATCGTCTTCTACACTTGATCATGATGATGAGTTTATAAGCTCAGATTATGATGATGATGATGATTTTGATGATGATGATGATGATGATGATGATGAGAACTCGGAGTTATGGGACAGTAATTTGGAATTGGAAAACGTTGTTGAATCGATTAAAGGATGGTCAACAAAAGGGAAGAGAGGAAGGAGAGGTGATTTGAAGTTTGATGAAGCAGATTTGAAGGATCCACCTTTAGAAGATGTGAAGGATATTGATGATGCTAATGGTCTATTGTTCTTAGCTACTACTGCAGAAGCAGCTGCTAATCTTAATGTTGCTGAGACTTCTGCTTCGCGTTCCGTTGAAGAGAAATATCTGGAAATGGTCAAGAAGAGGAAGAAGAAGCAGAAGAGATTGTCTGAGATGGAGAAAGAGTCATCAACATCTACTCATCATGATCATCAGCTTGATCAGGTTGTTGTTGTTGCAGCTGAGGAAGGTGGTGGTGCCGGTGCACGTGAGAAGCACGTGTGTGTGACTTGCAACAAGTCGTTTAGTTCTTATCAAGCTTTAGGAGGTCATAGAGCAAGTCACAACAAGGTCAAGATATTGGAGAATCATCAAGCTAGGGCAAACGCTGAAGCTTCATTACTTGGAACTGAAGCAATAATAACCGGTTTAGCTAGTGCTCAAGGAACAAACACATCTTTAAGCAGTAGTCATAATGGAGATCATGTTTGTAATATATGTCACAAAAGCTTCTCAACAGGTCAAGCTCTTGGTGGTCACAAGAGATGTCATTGGACTGCACCAGTTTCTACTGTGGCTCCAACCACGGTTCCAACCGCTGCTCCAACCGTTCCAGCAACTGCGTCTTCTAGTCAAGTAACAGAGACAGTACAAGAGGTGAAGAAATTGAAGAGAAGAGTTTTGGAGTTTGACTTGAATGAGTTGCCACCTAACGAAGAAGAAGAAAGAGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2_6

Protein Analysis

493

Amino Acids

54.53

Weight (kDa)

5.22

Isoelectric Point (pI)

49.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_6 PF13912 79 - 101 4e-07 C2H2-type zinc finger
zf-C2H2_6 PF13912 342 - 366 1.3e-10 C2H2-type zinc finger
zf-C2H2_6 PF13912 411 - 435 3.2e-11 C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015929)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26940 AT5G56200
fragaria_vesca FvH4_5g31390
malus_domestica MD03G1110900.v1.1 MD11G1124800.v1.1
prunus_persica Prupe.6G093500_v2.0.a1
rosa_laevigata RLG00000001711
rosa_multiflora Rmu_sc0000534.1_g000007
rosa_rugosa Rorug07G0239000
rosa_samantha Rh7AG386400 Rh7BG373000 Rh7CG405700 Rh7DG385100
rosa_wichuraiana Rw0G018440 Rw7G032440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 557
AccB1I GGYRCC 1 cut(s) 1004
AccII CGCG 1 cut(s) 853
AciI CCGC 1 cut(s) 1344
AclI AACGTT 1 cut(s) 657
AclWI GGATC 5 cut(s) 70, 95, 195, 737, 750
AcsI RAATTY 1 cut(s) 320
AcuI CTGAAG 2 cut(s) 1158, 1179
AcvI CACGTG 2 cut(s) 1016, 1027
AfaI GTAC 1 cut(s) 1398
AfiI CCNNNNNNNGG 2 cut(s) 59, 464
AflIII ACRYGT 1 cut(s) 1026
AgeI ACCGGT 1 cut(s) 1172
AgsI TTSAA 6 cut(s) 665, 718, 739, 863, 1417, 1444
AjuI GAANNNNNNNTTGG 2 cut(s) 20, 52
AleI CACNNNNGTG 1 cut(s) 1029
Alw21I GWGCWC 3 cut(s) 309, 1015, 1189
Alw26I GTCTC 4 cut(s) 152, 328, 833, 1385
Alw44I GTGCAC 1 cut(s) 1011
AlwI GGATC 5 cut(s) 70, 95, 195, 737, 750
AlwNI CAGNNNCTG 1 cut(s) 1367
Ama87I CYCGRG 1 cut(s) 149
ApaLI GTGCAC 1 cut(s) 1011
ApeKI GCWGC 4 cut(s) 815, 818, 986, 1346
ApoI RAATTY 1 cut(s) 320
ArsI GACNNNNNNTTYG 4 cut(s) 332, 364, 832, 864
AsiGI ACCGGT 1 cut(s) 1172
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 3 cut(s) 389, 722, 1417
AvaI CYCGRG 1 cut(s) 149
AvaII GGWCC 1 cut(s) 4
BaeGI GKGCMC 1 cut(s) 1015
BamHI GGATCC 1 cut(s) 742
BanI GGYRCC 1 cut(s) 1004
BarI GAAGNNNNNNTAC 2 cut(s) 1131, 1163
BbrPI CACGTG 2 cut(s) 1016, 1027
BbsI GAAGAC 3 cut(s) 114, 519, 1365
Bbv12I GWGCWC 3 cut(s) 309, 1015, 1189
BbvCI CCTCAGC 1 cut(s) 990
BbvI GCAGC 4 cut(s) 805, 827, 998, 1333
BccI CCATC 3 cut(s) 337, 672, 916
BclI TGATCA 4 cut(s) 166, 538, 955, 967
BcoDI GTCTC 4 cut(s) 152, 328, 833, 1385
BfaI CTAG 4 cut(s) 191, 1125, 1182, 1377
BfmI CTRYAG 1 cut(s) 807
BglII AGATCT 1 cut(s) 365
BisI GCNGC 4 cut(s) 816, 819, 987, 1347
BlsI GCNGC 4 cut(s) 817, 820, 988, 1348
Bme18I GGWCC 1 cut(s) 4
BmeT110I CYCGRG 1 cut(s) 149
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 4 cut(s) 744, 1006, 1326, 1338
BmsI GCATC 1 cut(s) 766
BpiI GAAGAC 3 cut(s) 114, 519, 1365
Bpu10I CCTNAGC 1 cut(s) 990
BpuEI CTTGAG 1 cut(s) 1173
Bsa29I ATCGAT 1 cut(s) 668
BsaAI YACGTR 2 cut(s) 1016, 1027
BsaBI GATNNNNATC 1 cut(s) 61
BsaI GGTCTC 2 cut(s) 152, 328
BsaJI CCNNGG 2 cut(s) 83, 1332
BsaWI WCCGGW 1 cut(s) 1172
BsaXI ACNNNNNCTCC 8 cut(s) 917, 947, 1218, 1248, 1309, 1333, 1339, 1363
Bsc4I CCNNNNNNNGG 2 cut(s) 59, 464
Bse118I RCCGGY 2 cut(s) 1007, 1172
Bse1I ACTGG 1 cut(s) 1310
Bse8I GATNNNNATC 1 cut(s) 61
BseCI ATCGAT 1 cut(s) 668
BseDI CCNNGG 2 cut(s) 83, 1332
BseGI GGATG 3 cut(s) 454, 505, 683
BseJI GATNNNNATC 1 cut(s) 61
BseLI CCNNNNNNNGG 2 cut(s) 59, 464
BseMII CTCAG 5 cut(s) 87, 576, 828, 909, 981
BseNI ACTGG 1 cut(s) 1310
BseRI GAGGAG 3 cut(s) 477, 480, 483
BseSI GKGCMC 1 cut(s) 1015
BseXI GCAGC 4 cut(s) 805, 827, 998, 1333
BsgI GTGCAG 1 cut(s) 1290
Bsh1236I CGCG 1 cut(s) 853
BshNI GGYRCC 1 cut(s) 1004
BshTI ACCGGT 1 cut(s) 1172
BshVI ATCGAT 1 cut(s) 668
BsiHKAI GWGCWC 3 cut(s) 309, 1015, 1189
BsiHKCI CYCGRG 1 cut(s) 149
BsiSI CCGG 2 cut(s) 1008, 1173
BslFI GGGAC 1 cut(s) 647
BslI CCNNNNNNNGG 2 cut(s) 59, 464
BsmAI GTCTC 4 cut(s) 152, 328, 833, 1385
BsmFI GGGAC 1 cut(s) 647
Bso31I GGTCTC 2 cut(s) 152, 328
BsoBI CYCGRG 1 cut(s) 149
Bsp1286I GDGCHC 3 cut(s) 309, 1015, 1189
BspACI CCGC 1 cut(s) 1344
BspCNI CTCAG 5 cut(s) 88, 575, 829, 910, 982
BspDI ATCGAT 1 cut(s) 668
BspFNI CGCG 1 cut(s) 853
BspHI TCATGA 3 cut(s) 169, 541, 952
BspLI GGNNCC 4 cut(s) 744, 1006, 1326, 1338
BspMAI CTGCAG 1 cut(s) 811
BspPI GGATC 5 cut(s) 70, 95, 195, 737, 750
BspT107I GGYRCC 1 cut(s) 1004
BspTNI GGTCTC 2 cut(s) 152, 328
BsrFI RCCGGY 2 cut(s) 1007, 1172
BsrI ACTGG 1 cut(s) 1310
BssAI RCCGGY 2 cut(s) 1007, 1172
BssECI CCNNGG 2 cut(s) 83, 1332
BssT1I CCWWGG 1 cut(s) 83
Bst4CI ACNGT 6 cut(s) 32, 638, 1321, 1336, 1357, 1396
Bst6I CTCTTC 9 cut(s) 150, 219, 501, 689, 858, 884, 902, 1412, 1417
BstBAI YACGTR 2 cut(s) 1016, 1027
BstDEI CTNAG 8 cut(s) 96, 177, 382, 562, 796, 837, 918, 990
BstDSI CCRYGG 1 cut(s) 1332
BstF5I GGATG 3 cut(s) 454, 505, 683
BstFNI CGCG 1 cut(s) 853
BstMAI GTCTC 4 cut(s) 152, 328, 833, 1385
BstMWI GCNNNNNNNGC 2 cut(s) 806, 815
BstSFI CTRYAG 1 cut(s) 807
BstSLI GKGCMC 1 cut(s) 1015
BstUI CGCG 1 cut(s) 853
BstV1I GCAGC 4 cut(s) 805, 827, 998, 1333
BstV2I GAAGAC 3 cut(s) 114, 519, 1365
BstX2I RGATCY 4 cut(s) 62, 187, 365, 742
BstYI RGATCY 4 cut(s) 62, 187, 365, 742
Bsu15I ATCGAT 1 cut(s) 668
BsuTUI ATCGAT 1 cut(s) 668
BtgI CCRYGG 1 cut(s) 1332
BtsCI GGATG 3 cut(s) 454, 505, 683
CaiI CAGNNNCTG 1 cut(s) 1367
CciI TCATGA 3 cut(s) 169, 541, 952
Cfr10I RCCGGY 2 cut(s) 1007, 1172
Cfr13I GGNCC 1 cut(s) 4
ClaI ATCGAT 1 cut(s) 668
CseI GACGC 1 cut(s) 1359
Csp6I GTAC 1 cut(s) 1397
CspAI ACCGGT 1 cut(s) 1172
CviAII CATG 6 cut(s) 170, 302, 445, 542, 953, 1232
CviQI GTAC 1 cut(s) 1397
DdeI CTNAG 8 cut(s) 96, 177, 382, 562, 796, 837, 918, 990
Eam1104I CTCTTC 9 cut(s) 150, 219, 501, 689, 858, 884, 902, 1412, 1417
EarI CTCTTC 9 cut(s) 150, 219, 501, 689, 858, 884, 902, 1412, 1417
Eco130I CCWWGG 1 cut(s) 83
Eco31I GGTCTC 2 cut(s) 152, 328
Eco47I GGWCC 1 cut(s) 4
Eco57I CTGAAG 2 cut(s) 1158, 1179
Eco72I CACGTG 2 cut(s) 1016, 1027
Eco88I CYCGRG 1 cut(s) 149
EcoT14I CCWWGG 1 cut(s) 83
ErhI CCWWGG 1 cut(s) 83
FaeI CATG 6 cut(s) 173, 305, 448, 545, 956, 1235
FaqI GGGAC 1 cut(s) 647
FatI CATG 6 cut(s) 169, 301, 444, 541, 952, 1231
FbaI TGATCA 4 cut(s) 166, 538, 955, 967
Fnu4HI GCNGC 4 cut(s) 816, 819, 987, 1347
FokI GGATG 3 cut(s) 441, 492, 690
Fsp4HI GCNGC 4 cut(s) 816, 819, 987, 1347
FspBI CTAG 4 cut(s) 191, 1125, 1182, 1377
GluI GCNGC 4 cut(s) 816, 819, 987, 1347
HapII CCGG 2 cut(s) 1008, 1173
HgaI GACGC 1 cut(s) 1359
Hin1II CATG 6 cut(s) 173, 305, 448, 545, 956, 1235
HincII GTYRAC 1 cut(s) 684
HindII GTYRAC 1 cut(s) 684
HindIII AAGCTT 4 cut(s) 276, 1065, 1140, 1255
HinfI GANTC 7 cut(s) 36, 57, 298, 665, 932, 1114, 1476
HpaII CCGG 2 cut(s) 1008, 1173
HphI GGTGA 3 cut(s) 389, 722, 1417
Hpy166II GTNNAC 3 cut(s) 417, 684, 1013
Hpy188I TCNGA 5 cut(s) 62, 370, 565, 625, 919
Hpy188III TCNNGA 9 cut(s) 149, 170, 191, 458, 542, 875, 886, 953, 1102
Hpy8I GTNNAC 3 cut(s) 417, 684, 1013
HpyAV CCTTC 6 cut(s) 212, 421, 696, 733, 757, 989
HpyCH4III ACNGT 6 cut(s) 32, 638, 1321, 1336, 1357, 1396
HpyCH4IV ACGT 3 cut(s) 657, 1015, 1026
HpyCH4V TGCA 5 cut(s) 809, 986, 1013, 1041, 1307
HpyF10VI GCNNNNNNNGC 2 cut(s) 806, 815
HpyF3I CTNAG 8 cut(s) 96, 177, 382, 562, 796, 837, 918, 990
HpySE526I ACGT 3 cut(s) 657, 1015, 1026
Hsp92II CATG 6 cut(s) 173, 305, 448, 545, 956, 1235
Ksp22I TGATCA 4 cut(s) 166, 538, 955, 967
LmnI GCTCC 2 cut(s) 1330, 1354
Lsp1109I GCAGC 4 cut(s) 805, 827, 998, 1333
LweI GCATC 1 cut(s) 766
MaeI CTAG 4 cut(s) 191, 1125, 1182, 1377
MaeII ACGT 3 cut(s) 657, 1015, 1026
MaeIII GTNAC 8 cut(s) 17, 377, 404, 1033, 1088, 1247, 1283, 1384
MflI RGATCY 4 cut(s) 62, 187, 365, 742
MhlI GDGCHC 3 cut(s) 309, 1015, 1189
MluCI AATT 6 cut(s) 8, 320, 517, 640, 647, 1412
MlyI GAGTC 1 cut(s) 941
MmeI TCCRAC 4 cut(s) 449, 1352, 1364, 1376
MseI TTAA 5 cut(s) 69, 75, 672, 828, 1208
MslI CAYNNNNRTG 2 cut(s) 546, 1029
MspA1I CMGCKG 3 cut(s) 818, 989, 1346
MspI CCGG 2 cut(s) 1008, 1173
MvnI CGCG 1 cut(s) 853
MwoI GCNNNNNNNGC 2 cut(s) 806, 815
NlaIII CATG 6 cut(s) 173, 305, 448, 545, 956, 1235
NlaIV GGNNCC 4 cut(s) 744, 1006, 1326, 1338
NmuCI GTSAC 5 cut(s) 377, 1033, 1088, 1247, 1283
OliI CACNNNNGTG 1 cut(s) 1029
PaeR7I CTCGAG 1 cut(s) 149
PagI TCATGA 3 cut(s) 169, 541, 952
PfeI GAWTC 5 cut(s) 36, 57, 298, 665, 1114
PinAI ACCGGT 1 cut(s) 1172
PkrI GCNGC 4 cut(s) 817, 820, 988, 1348
PleI GAGTC 1 cut(s) 940
PmaCI CACGTG 2 cut(s) 1016, 1027
PmlI CACGTG 2 cut(s) 1016, 1027
PpsI GAGTC 1 cut(s) 940
Ppu21I YACGTR 2 cut(s) 1016, 1027
PsiI TTATAA 1 cut(s) 557
Psp1406I AACGTT 1 cut(s) 657
PspCI CACGTG 2 cut(s) 1016, 1027
PspN4I GGNNCC 4 cut(s) 744, 1006, 1326, 1338
PspPI GGNCC 1 cut(s) 4
PstI CTGCAG 1 cut(s) 811
PstNI CAGNNNCTG 1 cut(s) 1367
PsuI RGATCY 4 cut(s) 62, 187, 365, 742
PvuII CAGCTG 2 cut(s) 818, 989
RsaI GTAC 1 cut(s) 1398
RsaNI GTAC 1 cut(s) 1397
RseI CAYNNNNRTG 2 cut(s) 546, 1029
SaqAI TTAA 5 cut(s) 69, 75, 672, 828, 1208
SatI GCNGC 4 cut(s) 816, 819, 987, 1347
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 1 cut(s) 941
SduI GDGCHC 3 cut(s) 309, 1015, 1189
SfaNI GCATC 1 cut(s) 766
SfcI CTRYAG 1 cut(s) 807
Sfr274I CTCGAG 1 cut(s) 149
SinI GGWCC 1 cut(s) 4
SlaI CTCGAG 1 cut(s) 149
SmiMI CAYNNNNRTG 2 cut(s) 546, 1029
SmlI CTYRAG 2 cut(s) 149, 1188
SmoI CTYRAG 2 cut(s) 149, 1188
Sse9I AATT 6 cut(s) 8, 320, 517, 640, 647, 1412
SsiI CCGC 1 cut(s) 1344
SspMI CTAG 4 cut(s) 191, 1125, 1182, 1377
StyI CCWWGG 1 cut(s) 83
TaaI ACNGT 6 cut(s) 32, 638, 1321, 1336, 1357, 1396
TaiI ACGT 3 cut(s) 660, 1018, 1029
TaqI TCGA 3 cut(s) 150, 309, 668
TaqII GACCGA 1 cut(s) 134
TasI AATT 6 cut(s) 8, 320, 517, 640, 647, 1412
TatI WGTACW 1 cut(s) 1396
TfiI GAWTC 5 cut(s) 36, 57, 298, 665, 1114
Tru1I TTAA 5 cut(s) 69, 75, 672, 828, 1208
Tru9I TTAA 5 cut(s) 69, 75, 672, 828, 1208
TseFI GTSAC 5 cut(s) 377, 1033, 1088, 1247, 1283
TseI GCWGC 4 cut(s) 815, 818, 986, 1346
Tsp45I GTSAC 5 cut(s) 377, 1033, 1088, 1247, 1283
TspDTI ATGAA 8 cut(s) 144, 186, 290, 440, 443, 510, 741, 1134
TspGWI ACGGA 2 cut(s) 310, 847
VneI GTGCAC 1 cut(s) 1011
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 1 cut(s) 320
XbaI TCTAGA 1 cut(s) 190
XcmI CCANNNNNNNNNTGG 1 cut(s) 465
XhoI CTCGAG 1 cut(s) 149
XspI CTAG 4 cut(s) 191, 1125, 1182, 1377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.