Rw0G018440

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00824
OG0015929
Physical Location & Seq
Forward (+)
7084 .. 8424
1341 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G018440.1

Sequence Viewer

Length: 1341 bp
ATGAAAAGCTTTCAAGCGAAACAAGAAGTGCCGGACCATGTCCAAGATCGAATTCTCAATAATAATGGAAAATCTCTTGGATCATGTCCCAATGTGAGAATTTACAGTCAACAGCGTCCTCATTATCTTCTTCCCAAGAAGATCATAAGCAAGTTCAACCCTCCCAAGCAGCACCAACAACAGCAGCAACGATATCATTATCCTCCTTCGAATCCTTCTAAATTGAATGCAGGAATCTCGTCGAGTTTGTCTTGCTATGTTTGCAAAAAGAGCTTCCCATCATCACAATTCTTGTACAGCCACATGATGAGATTGCATCCCGAAAGAGGCTTGAAGGGCGTGTTGCTGCCGCAACAAGCTCCGATGATGAAGTCTGTCATCCCTTCTCAATCTCTGTCATCGAATGAAAGAGGCATGAAGGGTGTGTTGCAGCCGCAACAAGCTCCGATGATGAAGTCTGTCATCCCTTCTCAATCTCTATCATCGAATGAAAGAGGCATGAAGGGTGCGTTGCCGCCGCAACAAGCTCCGATGATGAAGTCTGTCATCCCTTCTCAATCTCTGTCATCGAATGAAAGAGGCATGAAGGGTGTGTTGCCGCCGCAACAAGCTCTGATGATGAAGTCTGTCATCCCTTCTCAATCTCTGTCATCGAATGAAAGAGGCATGAAGGGTGTGTTACAGCCGCGAGCTCCGATCAGTCCGATCAAGTCTGTAGTTCCTTCTCGATTTGGATATTCTTCTGCATCGGAGTTATCAGATGTCAAAGAGCCAGATTGTGATCCAGTGAAGCTCTTATTAAGCTGGGGCAAGAAAGATCGGAGAGGCAGGACTAATAATCCTTGTCCTTGTGCTTGTAATGCTGCAATTGCTAGCCTACAAAAACCTAATGAAACTACGGAAGCCACTAAAAGTAGTAGAAGCATTCCTAGTAGTACTAAGAATACTCTAATTGCTAACCAACAAAATCCTAATAAAAGCAGTAGTACAAGTACCACTGATAATGAGATTAGTTTGATTGATAATAAGATAATGAAGATGACGATGATGACGAAGAAACACAAATGCAGTATTTGCCAGAAGGAGTTTGACTCTGGTCAGGCACTCGGAGGGCACAAGTCAAGTAGTGCTTGCAGGGCAGTGAGAGAAACCAAACTAATAGTTCCAGCAGCTCAAGAACATGCTCCTCAAGTAGTAGTGTCCACCATGAAGAAGGCGATGGATGACATTGAAGAGGGTGAGATTGTAGAAGACGGAGAGATTACAGATGAAGAAGGAAGTCTGCGGATAAGTCATAAAATGTTTGATTTTGATCTCAATGAACTTCCTCCAGAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2_6

Protein Analysis

446

Amino Acids

49.17

Weight (kDa)

9.47

Isoelectric Point (pI)

62.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_6 PF13912 354 - 375 8e-08 C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015929)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26940 AT5G56200
fragaria_vesca FvH4_5g31390
malus_domestica MD03G1110900.v1.1 MD11G1124800.v1.1
prunus_persica Prupe.6G093500_v2.0.a1
rosa_laevigata RLG00000001711
rosa_multiflora Rmu_sc0000534.1_g000007
rosa_rugosa Rorug07G0239000
rosa_samantha Rh7AG386400 Rh7BG373000 Rh7CG405700 Rh7DG385100
rosa_wichuraiana Rw0G018440 Rw7G032440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 688
AciI CCGC 8 cut(s) 350, 434, 515, 518, 599, 602, 686, 1285
AclWI GGATC 2 cut(s) 88, 776
AcsI RAATTY 2 cut(s) 51, 99
AfaI GTAC 4 cut(s) 296, 937, 988, 994
AfiI CCNNNNNNNGG 1 cut(s) 326
AgsI TTSAA 5 cut(s) 14, 157, 226, 334, 1232
AjuI GAANNNNNNNTTGG 2 cut(s) 36, 68
Alw21I GWGCWC 1 cut(s) 694
AlwI GGATC 2 cut(s) 88, 776
ApeKI GCWGC 6 cut(s) 169, 184, 346, 430, 863, 1169
ApoI RAATTY 2 cut(s) 51, 99
AspS9I GGNCC 1 cut(s) 34
AsuHPI GGTGA 1 cut(s) 1250
AsuII TTCGAA 1 cut(s) 209
AsuNHI GCTAGC 1 cut(s) 872
AvaII GGWCC 1 cut(s) 34
BaeGI GKGCMC 1 cut(s) 1116
BanII GRGCYC 1 cut(s) 694
BbsI GAAGAC 1 cut(s) 1257
Bbv12I GWGCWC 1 cut(s) 694
BbvI GCAGC 6 cut(s) 181, 196, 333, 442, 850, 1181
BccI CCATC 2 cut(s) 286, 1213
BcgI CGANNNNNNTGC 2 cut(s) 219, 253
BfaI CTAG 2 cut(s) 873, 930
BfmI CTRYAG 1 cut(s) 714
BmcAI AGTACT 1 cut(s) 937
Bme18I GGWCC 1 cut(s) 34
BmgT120I GGNCC 1 cut(s) 34
BmsI GCATC 2 cut(s) 325, 755
BmtI GCTAGC 1 cut(s) 876
BoxI GACNNNNGTC 1 cut(s) 1095
BpiI GAAGAC 1 cut(s) 1257
BplI GAGNNNNNCTC 2 cut(s) 1076, 1108
BpmI CTGGAG 1 cut(s) 1314
Bpu14I TTCGAA 1 cut(s) 209
BpuEI CTTGAG 2 cut(s) 1158, 1173
BsaBI GATNNNNATC 2 cut(s) 780, 1311
Bsc4I CCNNNNNNNGG 1 cut(s) 326
Bse1I ACTGG 1 cut(s) 785
Bse8I GATNNNNATC 2 cut(s) 780, 1311
BseGI GGATG 6 cut(s) 316, 378, 462, 546, 630, 1228
BseJI GATNNNNATC 2 cut(s) 780, 1311
BseLI CCNNNNNNNGG 1 cut(s) 326
BseNI ACTGG 1 cut(s) 785
BseRI GAGGAG 1 cut(s) 1176
BseSI GKGCMC 1 cut(s) 1116
BseXI GCAGC 6 cut(s) 181, 196, 333, 442, 850, 1181
BseYI CCCAGC 1 cut(s) 804
Bsh1236I CGCG 1 cut(s) 688
BsiHKAI GWGCWC 1 cut(s) 694
BsiSI CCGG 1 cut(s) 32
BslFI GGGAC 1 cut(s) 72
BslI CCNNNNNNNGG 1 cut(s) 326
BsmFI GGGAC 1 cut(s) 72
BsmI GAATGC 2 cut(s) 232, 924
Bsp119I TTCGAA 1 cut(s) 209
Bsp1286I GDGCHC 2 cut(s) 694, 1116
Bsp1407I TGTACA 1 cut(s) 294
Bsp143I GATC 8 cut(s) 46, 80, 141, 696, 705, 781, 817, 1312
BspACI CCGC 8 cut(s) 350, 434, 515, 518, 599, 602, 686, 1285
BspFNI CGCG 1 cut(s) 688
BspOI GCTAGC 1 cut(s) 876
BspPI GGATC 2 cut(s) 88, 776
BspT104I TTCGAA 1 cut(s) 209
BsrGI TGTACA 1 cut(s) 294
BsrI ACTGG 1 cut(s) 785
BssMI GATC 8 cut(s) 46, 80, 141, 696, 705, 781, 817, 1312
Bst4CI ACNGT 1 cut(s) 107
Bst6I CTCTTC 1 cut(s) 1227
BstAPI GCANNNNNTGC 1 cut(s) 1074
BstAUI TGTACA 1 cut(s) 294
BstBI TTCGAA 1 cut(s) 209
BstC8I GCNNGC 3 cut(s) 690, 874, 1132
BstDEI CTNAG 1 cut(s) 939
BstF5I GGATG 6 cut(s) 316, 378, 462, 546, 630, 1228
BstFNI CGCG 1 cut(s) 688
BstKTI GATC 8 cut(s) 49, 83, 144, 699, 708, 784, 820, 1315
BstMBI GATC 8 cut(s) 46, 80, 141, 696, 705, 781, 817, 1312
BstMWI GCNNNNNNNGC 7 cut(s) 261, 270, 336, 860, 869, 1074, 1136
BstNSI RCATGY 1 cut(s) 1184
BstPAI GACNNNNGTC 1 cut(s) 1095
BstSFI CTRYAG 1 cut(s) 714
BstSLI GKGCMC 1 cut(s) 1116
BstUI CGCG 1 cut(s) 688
BstV1I GCAGC 6 cut(s) 181, 196, 333, 442, 850, 1181
BstV2I GAAGAC 1 cut(s) 1257
BtgZI GCGATG 1 cut(s) 1232
BtsCI GGATG 6 cut(s) 316, 378, 462, 546, 630, 1228
BtsI GCAGTG 1 cut(s) 1146
BtsIMutI CAGTG 3 cut(s) 792, 996, 1146
Cac8I GCNNGC 3 cut(s) 690, 874, 1132
Cfr13I GGNCC 1 cut(s) 34
CseI GACGC 1 cut(s) 104
Csp6I GTAC 4 cut(s) 295, 936, 987, 993
CviAII CATG 9 cut(s) 38, 84, 304, 415, 499, 583, 667, 1181, 1207
CviQI GTAC 4 cut(s) 295, 936, 987, 993
DdeI CTNAG 1 cut(s) 939
DpnI GATC 8 cut(s) 48, 82, 143, 698, 707, 783, 819, 1314
DpnII GATC 8 cut(s) 46, 80, 141, 696, 705, 781, 817, 1312
Eam1104I CTCTTC 1 cut(s) 1227
EarI CTCTTC 1 cut(s) 1227
Ecl136II GAGCTC 1 cut(s) 692
Eco24I GRGCYC 1 cut(s) 694
Eco32I GATATC 1 cut(s) 194
Eco47I GGWCC 1 cut(s) 34
Eco53kI GAGCTC 1 cut(s) 692
EcoICRI GAGCTC 1 cut(s) 692
EcoRI GAATTC 1 cut(s) 51
EcoRV GATATC 1 cut(s) 194
EcoT38I GRGCYC 1 cut(s) 694
FaeI CATG 9 cut(s) 41, 87, 307, 418, 502, 586, 670, 1184, 1210
FalI AAGNNNNNCTT 2 cut(s) 1114, 1146
FaqI GGGAC 1 cut(s) 72
FatI CATG 9 cut(s) 37, 83, 303, 414, 498, 582, 666, 1180, 1206
FokI GGATG 6 cut(s) 303, 365, 449, 533, 617, 1235
FriOI GRGCYC 1 cut(s) 694
FspBI CTAG 2 cut(s) 873, 930
GsaI CCCAGC 1 cut(s) 808
GsuI CTGGAG 1 cut(s) 1314
HapII CCGG 1 cut(s) 32
HgaI GACGC 1 cut(s) 104
Hin1II CATG 9 cut(s) 41, 87, 307, 418, 502, 586, 670, 1184, 1210
HincII GTYRAC 1 cut(s) 110
HindII GTYRAC 1 cut(s) 110
HindIII AAGCTT 1 cut(s) 7
HinfI GANTC 3 cut(s) 211, 234, 1091
HpaII CCGG 1 cut(s) 32
HphI GGTGA 1 cut(s) 1250
Hpy166II GTNNAC 2 cut(s) 110, 1203
Hpy188III TCNNGA 4 cut(s) 320, 726, 1175, 1331
Hpy8I GTNNAC 2 cut(s) 110, 1203
Hpy99I CGWCG 1 cut(s) 244
HpyCH4III ACNGT 1 cut(s) 107
HpyCH4V TGCA 8 cut(s) 230, 264, 316, 430, 746, 866, 1068, 1134
HpyF10VI GCNNNNNNNGC 7 cut(s) 261, 270, 336, 860, 869, 1074, 1136
HpyF3I CTNAG 1 cut(s) 939
Hsp92II CATG 9 cut(s) 41, 87, 307, 418, 502, 586, 670, 1184, 1210
Kzo9I GATC 8 cut(s) 46, 80, 141, 696, 705, 781, 817, 1312
LmnI GCTCC 5 cut(s) 364, 448, 532, 697, 1189
Lsp1109I GCAGC 6 cut(s) 181, 196, 333, 442, 850, 1181
LweI GCATC 2 cut(s) 325, 755
MaeI CTAG 2 cut(s) 873, 930
MaeIII GTNAC 1 cut(s) 678
MalI GATC 8 cut(s) 48, 82, 143, 698, 707, 783, 819, 1314
MboI GATC 8 cut(s) 46, 80, 141, 696, 705, 781, 817, 1312
MfeI CAATTG 1 cut(s) 867
MhlI GDGCHC 2 cut(s) 694, 1116
MluCI AATT 6 cut(s) 51, 99, 221, 287, 867, 951
MlyI GAGTC 1 cut(s) 1085
MseI TTAA 1 cut(s) 800
MspI CCGG 1 cut(s) 32
MunI CAATTG 1 cut(s) 867
Mva1269I GAATGC 2 cut(s) 232, 924
MvnI CGCG 1 cut(s) 688
MwoI GCNNNNNNNGC 7 cut(s) 261, 270, 336, 860, 869, 1074, 1136
NdeII GATC 8 cut(s) 46, 80, 141, 696, 705, 781, 817, 1312
NheI GCTAGC 1 cut(s) 872
NlaIII CATG 9 cut(s) 41, 87, 307, 418, 502, 586, 670, 1184, 1210
NspI RCATGY 1 cut(s) 1184
NspV TTCGAA 1 cut(s) 209
PcsI WCGNNNNNNNCGW 1 cut(s) 1049
PctI GAATGC 2 cut(s) 232, 924
PfeI GAWTC 2 cut(s) 211, 234
PflFI GACNNNGTC 1 cut(s) 38
PleI GAGTC 1 cut(s) 1085
PpsI GAGTC 1 cut(s) 1085
PshAI GACNNNNGTC 1 cut(s) 1095
Psp124BI GAGCTC 1 cut(s) 694
PspFI CCCAGC 1 cut(s) 804
PspPI GGNCC 1 cut(s) 34
PsyI GACNNNGTC 1 cut(s) 38
RsaI GTAC 4 cut(s) 296, 937, 988, 994
RsaNI GTAC 4 cut(s) 295, 936, 987, 993
SacI GAGCTC 1 cut(s) 694
SaqAI TTAA 1 cut(s) 800
Sau3AI GATC 8 cut(s) 46, 80, 141, 696, 705, 781, 817, 1312
Sau96I GGNCC 1 cut(s) 34
ScaI AGTACT 1 cut(s) 937
SchI GAGTC 1 cut(s) 1085
SduI GDGCHC 2 cut(s) 694, 1116
SfaNI GCATC 2 cut(s) 325, 755
SfcI CTRYAG 1 cut(s) 714
SfuI TTCGAA 1 cut(s) 209
SinI GGWCC 1 cut(s) 34
SmlI CTYRAG 2 cut(s) 1173, 1188
SmoI CTYRAG 2 cut(s) 1173, 1188
Sse9I AATT 6 cut(s) 51, 99, 221, 287, 867, 951
SsiI CCGC 8 cut(s) 350, 434, 515, 518, 599, 602, 686, 1285
SspMI CTAG 2 cut(s) 873, 930
SstI GAGCTC 1 cut(s) 694
TaaI ACNGT 1 cut(s) 107
TaqI TCGA 8 cut(s) 49, 209, 242, 401, 485, 569, 653, 727
TasI AATT 6 cut(s) 51, 99, 221, 287, 867, 951
TatI WGTACW 3 cut(s) 294, 935, 986
TauI GCSGC 7 cut(s) 352, 436, 517, 520, 601, 604, 688
TfiI GAWTC 2 cut(s) 211, 234
Tru1I TTAA 1 cut(s) 800
Tru9I TTAA 1 cut(s) 800
TscAI CASTG 3 cut(s) 792, 1003, 1146
TseI GCWGC 6 cut(s) 169, 184, 346, 430, 863, 1169
TspGWI ACGGA 2 cut(s) 914, 1269
TspRI CASTG 3 cut(s) 792, 1003, 1146
Tth111I GACNNNGTC 1 cut(s) 38
VpaK11BI GGWCC 1 cut(s) 34
XapI RAATTY 2 cut(s) 51, 99
XceI RCATGY 1 cut(s) 1184
XspI CTAG 2 cut(s) 873, 930
ZrmI AGTACT 1 cut(s) 937
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.