Rh7BG373000

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0015929
Physical Location & Seq
Forward (+)
40118749 .. 40120074
1326 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG373000.1

Sequence Viewer

Length: 1173 bp
ATGAAAAGCTTTCAAGCGAAACAACAAGTGCCGGACCATGTCCGAGATCGAATTCTCAATAATAATGGAAAATCTCTTGGATCATGTCCCAATGTGAGAGTTTACAGTCAACAGCGTCCTCATTATCTTCTTCCCAAGAAGATCATAAGCAAGTTCAACCCTCCCAAGCAGCACCAACAACAGCAGCAACGATATCATTATCCTCCTTCGAATCCTTCTAAATTGAATGCAGGAATCTCGTCGAGTTTGTCTTGCTATGTTTGCAAAAAGAGCTTCCCATCATCACAATTCTTGTACAGCCACATGATGAGATTGCATCCCGAAAGAGGCTTGAAGGGTGTGTTTCTGCCGCAACAAGCTCCGATGATGAAGTCTGTCATCCCTTCTCAATCTCTGTCATCGAATGAAAGAGGCATGAAGGGTGTGTTGCCGCCGCAACAAGCTCCGATGATGAAGTCTGTCATCCCTTCTCAATCTCTGTCATCGAATGAAAGAGGCATGAAGGGTGTGTTACAGCCGCGAGCTCCGATCAGTCCGATCAAGTCTGTAGTTCCTTCTCGATTTGGATCTTCTTCTGCATCGGAGTTATCAGATGTCAAAGAGCCAGATTGTGATCCAGTGAAGCTCTTATTAAGCTGGGGCAAAAAAGATCGGAGAGGCAGGACTAATAATCCTTGTCCTTGTGCTTGTAATGCTGCAATTGCTAGCATACAAAAACCTAATGAAACTACGGAGGCCACTAAAAGTAGTAGTAGCATTCCTAGTAGTACTAGGAATACTCTAATTGCTAACCAAAAAAATCCTAAACCAAGCAGTAGTACAAGTACCACTGATAATGAGATTAGTTTGATTGATAATAAGATGATGAAGATGACGATGATGACGAAGAAACACAAATGCAGTATTTGCCACAAGGAGTTTGACACTGGTCAGGCACTCGGAGGGCACAAGTCAAGTAGTGCTTGCAGGGCAGTGAGAGAAACCAAACTAATAGTTTCAGCAGCTCATGAACATGCTCCTCAAGTAGTAGTGTCCACCACGAAGAAGACGATGGATGACATTGAAGAGGGTGAGATTATAGAAGACGGAGAGATTACAGATGAAGAAGGAAGTCAGCGGATAAGTCATAAAATGTTTGATTTTGATCTCAATGAACTTCCTCCAGAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2_6

Protein Analysis

390

Amino Acids

43.17

Weight (kDa)

9.43

Isoelectric Point (pI)

60.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_6 PF13912 298 - 319 2.9e-08 C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015929)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26940 AT5G56200
fragaria_vesca FvH4_5g31390
malus_domestica MD03G1110900.v1.1 MD11G1124800.v1.1
prunus_persica Prupe.6G093500_v2.0.a1
rosa_laevigata RLG00000001711
rosa_multiflora Rmu_sc0000534.1_g000007
rosa_rugosa Rorug07G0239000
rosa_samantha Rh7AG386400 Rh7BG373000 Rh7CG405700 Rh7DG385100
rosa_wichuraiana Rw0G018440 Rw7G032440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 520
AciI CCGC 5 cut(s) 350, 431, 434, 518, 1117
AclWI GGATC 3 cut(s) 88, 574, 608
AcsI RAATTY 1 cut(s) 51
AfaI GTAC 4 cut(s) 296, 769, 820, 826
AfiI CCNNNNNNNGG 1 cut(s) 326
AgsI TTSAA 5 cut(s) 14, 157, 226, 334, 1064
AluBI AGCT 8 cut(s) 9, 273, 359, 443, 524, 625, 636, 1004
AluI AGCT 8 cut(s) 9, 273, 359, 443, 524, 625, 636, 1004
Alw21I GWGCWC 1 cut(s) 526
AlwI GGATC 3 cut(s) 88, 574, 608
AoxI GGCC 1 cut(s) 735
ApeKI GCWGC 4 cut(s) 169, 184, 695, 1001
ApoI RAATTY 1 cut(s) 51
AspS9I GGNCC 1 cut(s) 34
AsuHPI GGTGA 1 cut(s) 1082
AsuII TTCGAA 1 cut(s) 209
AsuNHI GCTAGC 1 cut(s) 704
AvaII GGWCC 1 cut(s) 34
BaeGI GKGCMC 1 cut(s) 948
BanII GRGCYC 1 cut(s) 526
BbsI GAAGAC 2 cut(s) 1052, 1089
Bbv12I GWGCWC 1 cut(s) 526
BbvI GCAGC 4 cut(s) 181, 196, 682, 1013
BccI CCATC 2 cut(s) 286, 1045
BcgI CGANNNNNNTGC 2 cut(s) 219, 253
BfaI CTAG 3 cut(s) 705, 762, 771
BfmI CTRYAG 1 cut(s) 546
BisI GCNGC 8 cut(s) 170, 185, 350, 431, 434, 518, 696, 1002
BlsI GCNGC 8 cut(s) 171, 186, 351, 432, 435, 519, 697, 1003
BmcAI AGTACT 1 cut(s) 769
Bme18I GGWCC 1 cut(s) 34
BmgT120I GGNCC 1 cut(s) 34
BmsI GCATC 2 cut(s) 325, 587
BmtI GCTAGC 1 cut(s) 708
BoxI GACNNNNGTC 1 cut(s) 927
BpiI GAAGAC 2 cut(s) 1052, 1089
BpmI CTGGAG 1 cut(s) 1146
Bpu14I TTCGAA 1 cut(s) 209
BpuEI CTTGAG 1 cut(s) 1005
BsaBI GATNNNNATC 3 cut(s) 565, 612, 1143
Bsc4I CCNNNNNNNGG 1 cut(s) 326
Bse1I ACTGG 2 cut(s) 617, 931
Bse8I GATNNNNATC 3 cut(s) 565, 612, 1143
BseGI GGATG 4 cut(s) 316, 378, 462, 1060
BseJI GATNNNNATC 3 cut(s) 565, 612, 1143
BseLI CCNNNNNNNGG 1 cut(s) 326
BseNI ACTGG 2 cut(s) 617, 931
BseRI GAGGAG 1 cut(s) 1008
BseSI GKGCMC 1 cut(s) 948
BseXI GCAGC 4 cut(s) 181, 196, 682, 1013
BseYI CCCAGC 1 cut(s) 636
Bsh1236I CGCG 1 cut(s) 520
BshFI GGCC 1 cut(s) 737
BsiHKAI GWGCWC 1 cut(s) 526
BsiSI CCGG 1 cut(s) 32
BslFI GGGAC 1 cut(s) 72
BslI CCNNNNNNNGG 1 cut(s) 326
BsmFI GGGAC 1 cut(s) 72
BsmI GAATGC 2 cut(s) 232, 756
BsnI GGCC 1 cut(s) 737
Bsp119I TTCGAA 1 cut(s) 209
Bsp1286I GDGCHC 2 cut(s) 526, 948
Bsp1407I TGTACA 1 cut(s) 294
Bsp143I GATC 9 cut(s) 46, 80, 141, 528, 537, 566, 613, 649, 1144
BspACI CCGC 5 cut(s) 350, 431, 434, 518, 1117
BspANI GGCC 1 cut(s) 737
BspFNI CGCG 1 cut(s) 520
BspHI TCATGA 1 cut(s) 1006
BspOI GCTAGC 1 cut(s) 708
BspPI GGATC 3 cut(s) 88, 574, 608
BspT104I TTCGAA 1 cut(s) 209
BsrGI TGTACA 1 cut(s) 294
BsrI ACTGG 2 cut(s) 617, 931
BssMI GATC 9 cut(s) 46, 80, 141, 528, 537, 566, 613, 649, 1144
Bst4CI ACNGT 1 cut(s) 107
Bst6I CTCTTC 1 cut(s) 1059
BstAPI GCANNNNNTGC 1 cut(s) 906
BstAUI TGTACA 1 cut(s) 294
BstBI TTCGAA 1 cut(s) 209
BstC8I GCNNGC 3 cut(s) 522, 706, 964
BstF5I GGATG 4 cut(s) 316, 378, 462, 1060
BstFNI CGCG 1 cut(s) 520
BstKTI GATC 9 cut(s) 49, 83, 144, 531, 540, 569, 616, 652, 1147
BstMBI GATC 9 cut(s) 46, 80, 141, 528, 537, 566, 613, 649, 1144
BstMWI GCNNNNNNNGC 6 cut(s) 261, 270, 692, 701, 906, 968
BstNSI RCATGY 1 cut(s) 1016
BstPAI GACNNNNGTC 1 cut(s) 927
BstSFI CTRYAG 1 cut(s) 546
BstSLI GKGCMC 1 cut(s) 948
BstUI CGCG 1 cut(s) 520
BstV1I GCAGC 4 cut(s) 181, 196, 682, 1013
BstV2I GAAGAC 2 cut(s) 1052, 1089
BstX2I RGATCY 1 cut(s) 566
BstYI RGATCY 1 cut(s) 566
BsuRI GGCC 1 cut(s) 737
BtsCI GGATG 4 cut(s) 316, 378, 462, 1060
BtsI GCAGTG 1 cut(s) 978
BtsIMutI CAGTG 4 cut(s) 624, 828, 924, 978
Cac8I GCNNGC 3 cut(s) 522, 706, 964
CciI TCATGA 1 cut(s) 1006
Cfr13I GGNCC 1 cut(s) 34
CseI GACGC 1 cut(s) 104
Csp6I GTAC 4 cut(s) 295, 768, 819, 825
CviAII CATG 7 cut(s) 38, 84, 304, 415, 499, 1007, 1013
CviQI GTAC 4 cut(s) 295, 768, 819, 825
DpnI GATC 9 cut(s) 48, 82, 143, 530, 539, 568, 615, 651, 1146
DpnII GATC 9 cut(s) 46, 80, 141, 528, 537, 566, 613, 649, 1144
Eam1104I CTCTTC 1 cut(s) 1059
EarI CTCTTC 1 cut(s) 1059
Ecl136II GAGCTC 1 cut(s) 524
Eco24I GRGCYC 1 cut(s) 526
Eco32I GATATC 1 cut(s) 194
Eco47I GGWCC 1 cut(s) 34
Eco53kI GAGCTC 1 cut(s) 524
EcoICRI GAGCTC 1 cut(s) 524
EcoRI GAATTC 1 cut(s) 51
EcoRV GATATC 1 cut(s) 194
EcoT38I GRGCYC 1 cut(s) 526
FaeI CATG 7 cut(s) 41, 87, 307, 418, 502, 1010, 1016
FalI AAGNNNNNCTT 2 cut(s) 946, 978
FaqI GGGAC 1 cut(s) 72
FatI CATG 7 cut(s) 37, 83, 303, 414, 498, 1006, 1012
Fnu4HI GCNGC 8 cut(s) 170, 185, 350, 431, 434, 518, 696, 1002
FokI GGATG 4 cut(s) 303, 365, 449, 1067
FriOI GRGCYC 1 cut(s) 526
Fsp4HI GCNGC 8 cut(s) 170, 185, 350, 431, 434, 518, 696, 1002
FspBI CTAG 3 cut(s) 705, 762, 771
GluI GCNGC 8 cut(s) 170, 185, 350, 431, 434, 518, 696, 1002
GsaI CCCAGC 1 cut(s) 640
GsuI CTGGAG 1 cut(s) 1146
HaeIII GGCC 1 cut(s) 737
HapII CCGG 1 cut(s) 32
HgaI GACGC 1 cut(s) 104
Hin1II CATG 7 cut(s) 41, 87, 307, 418, 502, 1010, 1016
HincII GTYRAC 1 cut(s) 110
HindII GTYRAC 1 cut(s) 110
HindIII AAGCTT 1 cut(s) 7
HinfI GANTC 2 cut(s) 211, 234
HpaII CCGG 1 cut(s) 32
HphI GGTGA 1 cut(s) 1082
Hpy166II GTNNAC 3 cut(s) 103, 110, 1035
Hpy188I TCNGA 9 cut(s) 44, 363, 447, 528, 537, 583, 592, 654, 941
Hpy188III TCNNGA 4 cut(s) 320, 558, 1007, 1163
Hpy8I GTNNAC 3 cut(s) 103, 110, 1035
Hpy99I CGWCG 1 cut(s) 244
HpyAV CCTTC 9 cut(s) 216, 225, 328, 393, 412, 477, 496, 564, 1100
HpyCH4III ACNGT 1 cut(s) 107
HpyCH4V TGCA 7 cut(s) 230, 264, 316, 578, 698, 900, 966
HpyF10VI GCNNNNNNNGC 6 cut(s) 261, 270, 692, 701, 906, 968
Hsp92II CATG 7 cut(s) 41, 87, 307, 418, 502, 1010, 1016
Kzo9I GATC 9 cut(s) 46, 80, 141, 528, 537, 566, 613, 649, 1144
LmnI GCTCC 4 cut(s) 364, 448, 529, 1021
LpnPI CCDG 9 cut(s) 45, 216, 618, 622, 630, 646, 912, 917, 952
Lsp1109I GCAGC 4 cut(s) 181, 196, 682, 1013
LweI GCATC 2 cut(s) 325, 587
MaeI CTAG 3 cut(s) 705, 762, 771
MaeIII GTNAC 1 cut(s) 510
MalI GATC 9 cut(s) 48, 82, 143, 530, 539, 568, 615, 651, 1146
MboI GATC 9 cut(s) 46, 80, 141, 528, 537, 566, 613, 649, 1144
MfeI CAATTG 1 cut(s) 699
MflI RGATCY 1 cut(s) 566
MhlI GDGCHC 2 cut(s) 526, 948
MluCI AATT 5 cut(s) 51, 221, 287, 699, 783
MseI TTAA 1 cut(s) 632
MslI CAYNNNNRTG 1 cut(s) 1011
MspA1I CMGCKG 1 cut(s) 1117
MspI CCGG 1 cut(s) 32
MunI CAATTG 1 cut(s) 699
Mva1269I GAATGC 2 cut(s) 232, 756
MvnI CGCG 1 cut(s) 520
MwoI GCNNNNNNNGC 6 cut(s) 261, 270, 692, 701, 906, 968
NdeII GATC 9 cut(s) 46, 80, 141, 528, 537, 566, 613, 649, 1144
NheI GCTAGC 1 cut(s) 704
NlaIII CATG 7 cut(s) 41, 87, 307, 418, 502, 1010, 1016
NspI RCATGY 1 cut(s) 1016
NspV TTCGAA 1 cut(s) 209
PagI TCATGA 1 cut(s) 1006
PcsI WCGNNNNNNNCGW 2 cut(s) 881, 1046
PctI GAATGC 2 cut(s) 232, 756
PfeI GAWTC 2 cut(s) 211, 234
PflFI GACNNNGTC 1 cut(s) 38
PkrI GCNGC 8 cut(s) 171, 186, 351, 432, 435, 519, 697, 1003
PshAI GACNNNNGTC 1 cut(s) 927
Psp124BI GAGCTC 1 cut(s) 526
PspFI CCCAGC 1 cut(s) 636
PspPI GGNCC 1 cut(s) 34
PsuI RGATCY 1 cut(s) 566
PsyI GACNNNGTC 1 cut(s) 38
RsaI GTAC 4 cut(s) 296, 769, 820, 826
RsaNI GTAC 4 cut(s) 295, 768, 819, 825
RseI CAYNNNNRTG 1 cut(s) 1011
SacI GAGCTC 1 cut(s) 526
SaqAI TTAA 1 cut(s) 632
SatI GCNGC 8 cut(s) 170, 185, 350, 431, 434, 518, 696, 1002
Sau3AI GATC 9 cut(s) 46, 80, 141, 528, 537, 566, 613, 649, 1144
Sau96I GGNCC 1 cut(s) 34
ScaI AGTACT 1 cut(s) 769
SduI GDGCHC 2 cut(s) 526, 948
SetI ASST 9 cut(s) 11, 275, 361, 445, 526, 627, 638, 721, 1006
SfaNI GCATC 2 cut(s) 325, 587
SfcI CTRYAG 1 cut(s) 546
SfuI TTCGAA 1 cut(s) 209
SinI GGWCC 1 cut(s) 34
SmiMI CAYNNNNRTG 1 cut(s) 1011
SmlI CTYRAG 1 cut(s) 1020
SmoI CTYRAG 1 cut(s) 1020
Sse9I AATT 5 cut(s) 51, 221, 287, 699, 783
SsiI CCGC 5 cut(s) 350, 431, 434, 518, 1117
SspMI CTAG 3 cut(s) 705, 762, 771
SstI GAGCTC 1 cut(s) 526
TaaI ACNGT 1 cut(s) 107
TaqI TCGA 6 cut(s) 49, 209, 242, 401, 485, 559
TasI AATT 5 cut(s) 51, 221, 287, 699, 783
TatI WGTACW 3 cut(s) 294, 767, 818
TauI GCSGC 4 cut(s) 352, 433, 436, 520
TfiI GAWTC 2 cut(s) 211, 234
Tru1I TTAA 1 cut(s) 632
Tru9I TTAA 1 cut(s) 632
TscAI CASTG 4 cut(s) 624, 835, 931, 978
TseI GCWGC 4 cut(s) 169, 184, 695, 1001
TspGWI ACGGA 2 cut(s) 746, 1101
TspRI CASTG 4 cut(s) 624, 835, 931, 978
Tth111I GACNNNGTC 1 cut(s) 38
VpaK11BI GGWCC 1 cut(s) 34
XapI RAATTY 1 cut(s) 51
XceI RCATGY 1 cut(s) 1016
XspI CTAG 3 cut(s) 705, 762, 771
ZrmI AGTACT 1 cut(s) 769
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.