Rw7G032440

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0015929
Physical Location & Seq
Forward (+)
47107432 .. 47108679
1248 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G032440.1

Sequence Viewer

Length: 1248 bp
ATGAAAAGCTTTCAAGCGAAACAACAAGTGCCGGACCATGTCCGAGATCGAATTCTCAATAATAATGGAAAATCTCTTGGATCATGTCCCAATGTGAGAGTTTACAGTCAACAGCGTCCTCATTATCTTCTTCCCAAGAAGATCATAAGCAAGTTCAACCCTCCCAAGCAGCACCAACAACAGCAGCAACGATATCATTATCCTCCTTCGAATCCTTCTAAATTAAATGCAGGAATCTCGTCGAGTTTGTCTTGCTATGTTTGCAAAAAGAGCTTCCCATCATCACAATTCTTGTACAGCCACATGATGAGATTGCATCCCGAAAGAGGCTTGAAGGGTGTGTTGCTGCCGCAACAAGCTCCGATGATGAAGTCTGTTATCCTTTCTCAATCTCAGTCATCGAATGAAAGAGGCAAGAAGGGTGTGTTGCCGCCACAACAAGCTCCGATGATGAAGTCTGTCATCCCTTCTCAATCTCTGTCATCGAATGAAAGAGGCATGAAGGGTGTGTTGCCGCCGCAACAAGCTCTGATGATGAAGTCTGTCATCCCTTCTCAATCTGTGTCATCGAATGAAAGAGGCATGAAGGGTGTGTTACAGCCGCGAGCTCCGATCAGTCCGATCAAGTCTGTAGTTCCTTCTCGATTTGGATCTTCTTCTGCATCGGAGTTATCAGATGTCAAAGAGCCAGATTGTGATCCAGTGAAGCTCTTATTAAGCTGGGGCAAGAAAGATCGGAGAGGCAGGACTAATAATCCTTGTCCTTGTGCTTGTAATGCTGCAATTGCTAGCCTACAAAAACCTAATGAAACTACTGAGGCCACTAAAAGTAGTAGTAGCATTCCTAGAAGTACTAGGAATACTCTAATTGCTAACCAACAAAATCCTAAACCAAGCAGTAGTACAAGTACAACTGATAATGAGATTAGTTTGATTGATAATAAGATGATGAAGATGACGAAGAAACACAAATGCAGTATTTGCCACAAGGAGTTTGACACTGGTCAGGCACTCGGAGGGCACAAGTCAAGTAGTGCTTGCAGGGCAGTGAGAGAAACCAAACTAATAGTTTCAGCAGTTCATGAACATGCTCCTCAAGTAGTAGTGTCCACCACGAAGAAGACGATGGATGACATTGAAGAGGGTGAGATTATAGAAGACGGAGAGATTACAGATGAAGAAGGAAGTCAGCGGATAAGTCATAAAATGTTTAATTTTGATCTCAATGAACTTCCTCCAGAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2_6

Protein Analysis

415

Amino Acids

45.88

Weight (kDa)

9.59

Isoelectric Point (pI)

63.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_6 PF13912 323 - 344 3.1e-08 C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015929)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26940 AT5G56200
fragaria_vesca FvH4_5g31390
malus_domestica MD03G1110900.v1.1 MD11G1124800.v1.1
prunus_persica Prupe.6G093500_v2.0.a1
rosa_laevigata RLG00000001711
rosa_multiflora Rmu_sc0000534.1_g000007
rosa_rugosa Rorug07G0239000
rosa_samantha Rh7AG386400 Rh7BG373000 Rh7CG405700 Rh7DG385100
rosa_wichuraiana Rw0G018440 Rw7G032440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 604
AciI CCGC 6 cut(s) 350, 431, 515, 518, 602, 1192
AclWI GGATC 3 cut(s) 88, 658, 692
AcsI RAATTY 1 cut(s) 51
AfaI GTAC 4 cut(s) 296, 853, 904, 910
AfiI CCNNNNNNNGG 1 cut(s) 326
AgsI TTSAA 4 cut(s) 14, 157, 334, 1139
AluBI AGCT 8 cut(s) 9, 273, 359, 443, 527, 608, 709, 720
AluI AGCT 8 cut(s) 9, 273, 359, 443, 527, 608, 709, 720
Alw21I GWGCWC 1 cut(s) 610
AlwI GGATC 3 cut(s) 88, 658, 692
AoxI GGCC 1 cut(s) 819
ApeKI GCWGC 4 cut(s) 169, 184, 346, 779
ApoI RAATTY 1 cut(s) 51
AspS9I GGNCC 1 cut(s) 34
AsuHPI GGTGA 1 cut(s) 1157
AsuII TTCGAA 1 cut(s) 209
AsuNHI GCTAGC 1 cut(s) 788
AvaII GGWCC 1 cut(s) 34
BaeGI GKGCMC 1 cut(s) 1023
BanII GRGCYC 1 cut(s) 610
BbsI GAAGAC 2 cut(s) 1127, 1164
Bbv12I GWGCWC 1 cut(s) 610
BbvI GCAGC 4 cut(s) 181, 196, 333, 766
BccI CCATC 2 cut(s) 286, 1120
BcgI CGANNNNNNTGC 2 cut(s) 219, 253
BfaI CTAG 3 cut(s) 789, 846, 855
BfmI CTRYAG 1 cut(s) 630
BisI GCNGC 9 cut(s) 170, 185, 347, 350, 431, 515, 518, 602, 780
BlsI GCNGC 9 cut(s) 171, 186, 348, 351, 432, 516, 519, 603, 781
BmcAI AGTACT 1 cut(s) 853
Bme18I GGWCC 1 cut(s) 34
BmgT120I GGNCC 1 cut(s) 34
BmsI GCATC 2 cut(s) 325, 671
BmtI GCTAGC 1 cut(s) 792
BoxI GACNNNNGTC 1 cut(s) 1002
BpiI GAAGAC 2 cut(s) 1127, 1164
BpmI CTGGAG 1 cut(s) 1221
Bpu14I TTCGAA 1 cut(s) 209
BpuEI CTTGAG 1 cut(s) 1080
BsaBI GATNNNNATC 2 cut(s) 649, 696
Bsc4I CCNNNNNNNGG 1 cut(s) 326
Bse1I ACTGG 2 cut(s) 701, 1006
Bse8I GATNNNNATC 2 cut(s) 649, 696
BseGI GGATG 4 cut(s) 316, 462, 546, 1135
BseJI GATNNNNATC 2 cut(s) 649, 696
BseLI CCNNNNNNNGG 1 cut(s) 326
BseMII CTCAG 2 cut(s) 407, 807
BseNI ACTGG 2 cut(s) 701, 1006
BseRI GAGGAG 1 cut(s) 1083
BseSI GKGCMC 1 cut(s) 1023
BseXI GCAGC 4 cut(s) 181, 196, 333, 766
BseYI CCCAGC 1 cut(s) 720
Bsh1236I CGCG 1 cut(s) 604
BshFI GGCC 1 cut(s) 821
BsiHKAI GWGCWC 1 cut(s) 610
BsiSI CCGG 1 cut(s) 32
BslFI GGGAC 1 cut(s) 72
BslI CCNNNNNNNGG 1 cut(s) 326
BsmFI GGGAC 1 cut(s) 72
BsmI GAATGC 1 cut(s) 840
BsnI GGCC 1 cut(s) 821
Bsp119I TTCGAA 1 cut(s) 209
Bsp1286I GDGCHC 2 cut(s) 610, 1023
Bsp1407I TGTACA 1 cut(s) 294
Bsp143I GATC 9 cut(s) 46, 80, 141, 612, 621, 650, 697, 733, 1219
BspACI CCGC 6 cut(s) 350, 431, 515, 518, 602, 1192
BspANI GGCC 1 cut(s) 821
BspCNI CTCAG 2 cut(s) 406, 808
BspFNI CGCG 1 cut(s) 604
BspHI TCATGA 1 cut(s) 1081
BspOI GCTAGC 1 cut(s) 792
BspPI GGATC 3 cut(s) 88, 658, 692
BspT104I TTCGAA 1 cut(s) 209
BsrGI TGTACA 1 cut(s) 294
BsrI ACTGG 2 cut(s) 701, 1006
BssMI GATC 9 cut(s) 46, 80, 141, 612, 621, 650, 697, 733, 1219
Bst4CI ACNGT 1 cut(s) 107
Bst6I CTCTTC 1 cut(s) 1134
BstAPI GCANNNNNTGC 1 cut(s) 981
BstAUI TGTACA 1 cut(s) 294
BstBI TTCGAA 1 cut(s) 209
BstC8I GCNNGC 3 cut(s) 606, 790, 1039
BstDEI CTNAG 2 cut(s) 393, 816
BstF5I GGATG 4 cut(s) 316, 462, 546, 1135
BstFNI CGCG 1 cut(s) 604
BstKTI GATC 9 cut(s) 49, 83, 144, 615, 624, 653, 700, 736, 1222
BstMBI GATC 9 cut(s) 46, 80, 141, 612, 621, 650, 697, 733, 1219
BstMWI GCNNNNNNNGC 6 cut(s) 261, 270, 776, 785, 981, 1043
BstNSI RCATGY 1 cut(s) 1091
BstPAI GACNNNNGTC 1 cut(s) 1002
BstSFI CTRYAG 1 cut(s) 630
BstSLI GKGCMC 1 cut(s) 1023
BstUI CGCG 1 cut(s) 604
BstV1I GCAGC 4 cut(s) 181, 196, 333, 766
BstV2I GAAGAC 2 cut(s) 1127, 1164
BstX2I RGATCY 1 cut(s) 650
BstYI RGATCY 1 cut(s) 650
BsuRI GGCC 1 cut(s) 821
BtsCI GGATG 4 cut(s) 316, 462, 546, 1135
BtsI GCAGTG 1 cut(s) 1053
BtsIMutI CAGTG 3 cut(s) 708, 999, 1053
Cac8I GCNNGC 3 cut(s) 606, 790, 1039
CciI TCATGA 1 cut(s) 1081
Cfr13I GGNCC 1 cut(s) 34
CseI GACGC 1 cut(s) 104
Csp6I GTAC 4 cut(s) 295, 852, 903, 909
CviAII CATG 7 cut(s) 38, 84, 304, 499, 583, 1082, 1088
CviQI GTAC 4 cut(s) 295, 852, 903, 909
DdeI CTNAG 2 cut(s) 393, 816
DpnI GATC 9 cut(s) 48, 82, 143, 614, 623, 652, 699, 735, 1221
DpnII GATC 9 cut(s) 46, 80, 141, 612, 621, 650, 697, 733, 1219
Eam1104I CTCTTC 1 cut(s) 1134
EarI CTCTTC 1 cut(s) 1134
Ecl136II GAGCTC 1 cut(s) 608
Eco24I GRGCYC 1 cut(s) 610
Eco32I GATATC 1 cut(s) 194
Eco47I GGWCC 1 cut(s) 34
Eco53kI GAGCTC 1 cut(s) 608
EcoICRI GAGCTC 1 cut(s) 608
EcoRI GAATTC 1 cut(s) 51
EcoRV GATATC 1 cut(s) 194
EcoT38I GRGCYC 1 cut(s) 610
FaeI CATG 7 cut(s) 41, 87, 307, 502, 586, 1085, 1091
FalI AAGNNNNNCTT 2 cut(s) 1021, 1053
FaqI GGGAC 1 cut(s) 72
FatI CATG 7 cut(s) 37, 83, 303, 498, 582, 1081, 1087
Fnu4HI GCNGC 9 cut(s) 170, 185, 347, 350, 431, 515, 518, 602, 780
FokI GGATG 4 cut(s) 303, 449, 533, 1142
FriOI GRGCYC 1 cut(s) 610
Fsp4HI GCNGC 9 cut(s) 170, 185, 347, 350, 431, 515, 518, 602, 780
FspBI CTAG 3 cut(s) 789, 846, 855
GluI GCNGC 9 cut(s) 170, 185, 347, 350, 431, 515, 518, 602, 780
GsaI CCCAGC 1 cut(s) 724
GsuI CTGGAG 1 cut(s) 1221
HaeIII GGCC 1 cut(s) 821
HapII CCGG 1 cut(s) 32
HgaI GACGC 1 cut(s) 104
Hin1II CATG 7 cut(s) 41, 87, 307, 502, 586, 1085, 1091
HincII GTYRAC 1 cut(s) 110
HindII GTYRAC 1 cut(s) 110
HindIII AAGCTT 1 cut(s) 7
HinfI GANTC 2 cut(s) 211, 234
HpaII CCGG 1 cut(s) 32
HphI GGTGA 1 cut(s) 1157
Hpy166II GTNNAC 3 cut(s) 103, 110, 1110
Hpy188III TCNNGA 4 cut(s) 320, 642, 1082, 1238
Hpy8I GTNNAC 3 cut(s) 103, 110, 1110
Hpy99I CGWCG 1 cut(s) 244
HpyCH4III ACNGT 1 cut(s) 107
HpyCH4V TGCA 7 cut(s) 230, 264, 316, 662, 782, 975, 1041
HpyF10VI GCNNNNNNNGC 6 cut(s) 261, 270, 776, 785, 981, 1043
HpyF3I CTNAG 2 cut(s) 393, 816
Hsp92II CATG 7 cut(s) 41, 87, 307, 502, 586, 1085, 1091
Kzo9I GATC 9 cut(s) 46, 80, 141, 612, 621, 650, 697, 733, 1219
LmnI GCTCC 4 cut(s) 364, 448, 613, 1096
LpnPI CCDG 9 cut(s) 45, 216, 702, 706, 714, 730, 987, 992, 1027
Lsp1109I GCAGC 4 cut(s) 181, 196, 333, 766
LweI GCATC 2 cut(s) 325, 671
MaeI CTAG 3 cut(s) 789, 846, 855
MaeIII GTNAC 1 cut(s) 594
MalI GATC 9 cut(s) 48, 82, 143, 614, 623, 652, 699, 735, 1221
MboI GATC 9 cut(s) 46, 80, 141, 612, 621, 650, 697, 733, 1219
MfeI CAATTG 1 cut(s) 783
MflI RGATCY 1 cut(s) 650
MhlI GDGCHC 2 cut(s) 610, 1023
MluCI AATT 6 cut(s) 51, 221, 287, 783, 867, 1213
MseI TTAA 3 cut(s) 224, 716, 1212
MslI CAYNNNNRTG 1 cut(s) 1086
MspA1I CMGCKG 1 cut(s) 1192
MspI CCGG 1 cut(s) 32
MunI CAATTG 1 cut(s) 783
Mva1269I GAATGC 1 cut(s) 840
MvnI CGCG 1 cut(s) 604
MwoI GCNNNNNNNGC 6 cut(s) 261, 270, 776, 785, 981, 1043
NdeII GATC 9 cut(s) 46, 80, 141, 612, 621, 650, 697, 733, 1219
NheI GCTAGC 1 cut(s) 788
NlaIII CATG 7 cut(s) 41, 87, 307, 502, 586, 1085, 1091
NspI RCATGY 1 cut(s) 1091
NspV TTCGAA 1 cut(s) 209
PagI TCATGA 1 cut(s) 1081
PcsI WCGNNNNNNNCGW 1 cut(s) 1121
PctI GAATGC 1 cut(s) 840
PfeI GAWTC 2 cut(s) 211, 234
PflFI GACNNNGTC 1 cut(s) 38
PkrI GCNGC 9 cut(s) 171, 186, 348, 351, 432, 516, 519, 603, 781
PshAI GACNNNNGTC 1 cut(s) 1002
Psp124BI GAGCTC 1 cut(s) 610
PspFI CCCAGC 1 cut(s) 720
PspPI GGNCC 1 cut(s) 34
PsuI RGATCY 1 cut(s) 650
PsyI GACNNNGTC 1 cut(s) 38
RsaI GTAC 4 cut(s) 296, 853, 904, 910
RsaNI GTAC 4 cut(s) 295, 852, 903, 909
RseI CAYNNNNRTG 1 cut(s) 1086
SacI GAGCTC 1 cut(s) 610
SaqAI TTAA 3 cut(s) 224, 716, 1212
SatI GCNGC 9 cut(s) 170, 185, 347, 350, 431, 515, 518, 602, 780
Sau3AI GATC 9 cut(s) 46, 80, 141, 612, 621, 650, 697, 733, 1219
Sau96I GGNCC 1 cut(s) 34
ScaI AGTACT 1 cut(s) 853
SduI GDGCHC 2 cut(s) 610, 1023
SetI ASST 9 cut(s) 11, 275, 361, 445, 529, 610, 711, 722, 805
SfaNI GCATC 2 cut(s) 325, 671
SfcI CTRYAG 1 cut(s) 630
SfuI TTCGAA 1 cut(s) 209
SinI GGWCC 1 cut(s) 34
SmiMI CAYNNNNRTG 1 cut(s) 1086
SmlI CTYRAG 1 cut(s) 1095
SmoI CTYRAG 1 cut(s) 1095
Sse9I AATT 6 cut(s) 51, 221, 287, 783, 867, 1213
SsiI CCGC 6 cut(s) 350, 431, 515, 518, 602, 1192
SspMI CTAG 3 cut(s) 789, 846, 855
SstI GAGCTC 1 cut(s) 610
TaaI ACNGT 1 cut(s) 107
TaqI TCGA 7 cut(s) 49, 209, 242, 401, 485, 569, 643
TasI AATT 6 cut(s) 51, 221, 287, 783, 867, 1213
TatI WGTACW 4 cut(s) 294, 851, 902, 908
TauI GCSGC 5 cut(s) 352, 433, 517, 520, 604
TfiI GAWTC 2 cut(s) 211, 234
Tru1I TTAA 3 cut(s) 224, 716, 1212
Tru9I TTAA 3 cut(s) 224, 716, 1212
TscAI CASTG 3 cut(s) 708, 1006, 1053
TseI GCWGC 4 cut(s) 169, 184, 346, 779
TspGWI ACGGA 1 cut(s) 1176
TspRI CASTG 3 cut(s) 708, 1006, 1053
Tth111I GACNNNGTC 1 cut(s) 38
VpaK11BI GGWCC 1 cut(s) 34
XapI RAATTY 1 cut(s) 51
XceI RCATGY 1 cut(s) 1091
XspI CTAG 3 cut(s) 789, 846, 855
ZrmI AGTACT 1 cut(s) 853
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.