AT2G27760

Belongs to the IPP transferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0004188
Physical Location & Seq
Forward (+)
11824772 .. 11827609
2838 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G27760.1

Sequence Viewer

Length: 1401 bp
ATGATGATGTTAAACCCTAGCAATGGCGGAATCGAGGGAGAGAAGATGAAGAAGAAGGCGAAGGTGGTTGTGATAATGGGTCCAACAGGTTCTGGGAAATCAAAGCTTGCCGTTGATTTGGCGTCTCACTTTCCGGTGGAGATTATTAACGCCGACGCAATGCAGATATACTCTGGTCTCGACGTTCTCACCAATAAAGTCACCGTCGATGAACAAAAAGGAGTGCCTCATCATTTACTTGGGACGGTGAGCTCAGATATGGAGTTCACAGCTAGGGATTTTCGAGACTTCACTGTTCCTCTTATTGAGGAGATCGTTTCTCGCAATCACATTCCAGTTCTTGTTGGAGGAACACATTATTATATACAGGCTGTTGTAAGTAAATTTCTTCTTGACGATGCAGCAGAGGATACCGAGGAGTGTTGTGCAGATGTTGCTTCAGTGGTTGACCAGGACATGGTTGTTGAGTCTGTCTTTGGGAGAGATGATTTGAGCCATGGCTATGAACTTCTTAAAGAGCTTGATCCTGTGGCAGCTAACAGAATTCACCCCAATAATCACAGAAAAATTAATCAATACCTTAGCTTGCATGCTAGTAGAGGAGTTCTTCCAAGCAAGCTATATCAGGGAAAGACTGCAGAGAACTGGGGCTGCATCAATGCATCTCGTTTTGATTACTGTTTGATATGCATGGACGCTGAAACTGCAGTACTGGACAGATATGTTGAACAAAGAGTAGATGCTATGGTAGATGCTGGACTACTTGATGAAGTATATGACATCTACAAACCAGGAGCCGACTATACTAGAGGCCTAAGGCAATCCATAGGTGTCAGAGAGTTTGAAGATTTCCTGAAAATACATCTCTCGGAGACATGTGCTGGTCATTTAACAAGCTTAAGTAACGATGATAAGGTTATGAAGGAGAATCTGAGGAAGATTCTGAATTTTCCAAAAGATGATAAGTTGAGGATTATGTTAGAGGAAGCAATTGATAGGGTGAAGTTAAATACCAGAAGGCTCCTTCGTCGTCAAAAAAGGAGAGTTAGTCGGCTAGAAACGGTCTTTGGCTGGAATATTCATTACATTGATGCAACAGAGTACATATTAAGCAAATCTGAAGAATCATGGAATGCGCAAGTGGTTAAACCTGCTTCAGAGATCATCAGGTGTTTCCTGGAGACAGAAACCGAATCGGGTCGGGATCCAACTTCAGGAAAGTCCATTGAAAGAGATCTATGGACTCAATATGTTTGCGAGGCTTGTGGAAACAAGATACTAAGAGGAAGACACGAGTGGGAACATCACAAACAAGGCCGTACGCATCGTAAGAGAACCACTCGACACAAAAACTCCCAAACTTACAAAAACAGAGAAGTTCAAGAAGCAGAAGTAAATTGA

Protein Analysis

466

Amino Acids

53.1

Weight (kDa)

6.21

Isoelectric Point (pI)

40.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IPPT PF01715 55 - 346 2.6e-52 IPP transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1137
Acc36I ACCTGC 1 cut(s) 1159
AccB7I CCANNNNNTGG 1 cut(s) 457
AciI CCGC 1 cut(s) 27
AclWI GGATC 3 cut(s) 518, 1199, 1212
AcsI RAATTY 3 cut(s) 383, 543, 946
AcuI CTGAAG 4 cut(s) 423, 1140, 1140, 1197
AcyI GRCGYC 1 cut(s) 122
AfaI GTAC 3 cut(s) 711, 1103, 1321
AfiI CCNNNNNNNGG 3 cut(s) 23, 457, 1214
AflII CTTAAG 1 cut(s) 898
AflIII ACRYGT 1 cut(s) 875
AgsI TTSAA 4 cut(s) 728, 845, 1229, 1382
AjnI CCWGG 3 cut(s) 450, 790, 1176
AjuI GAANNNNNNNTTGG 2 cut(s) 1050, 1082
AluBI AGCT 8 cut(s) 106, 252, 272, 520, 536, 585, 619, 897
AluI AGCT 8 cut(s) 106, 252, 272, 520, 536, 585, 619, 897
Alw21I GWGCWC 1 cut(s) 254
Alw26I GTCTC 5 cut(s) 129, 182, 279, 866, 1175
AlwI GGATC 3 cut(s) 518, 1199, 1212
AlwNI CAGNNNCTG 1 cut(s) 92
AoxI GGCC 2 cut(s) 811, 1315
ApeKI GCWGC 3 cut(s) 401, 533, 651
ApoI RAATTY 3 cut(s) 383, 543, 946
AseI ATTAAT 1 cut(s) 570
AspLEI GCGC 1 cut(s) 1138
AspS9I GGNCC 1 cut(s) 80
AsuHPI GGTGA 5 cut(s) 181, 193, 259, 539, 1012
AvaII GGWCC 1 cut(s) 80
AxyI CCTNAGG 1 cut(s) 815
BamHI GGATCC 1 cut(s) 1204
BanII GRGCYC 1 cut(s) 254
BauI CACGAG 1 cut(s) 1292
BbsI GAAGAC 1 cut(s) 1294
Bbv12I GWGCWC 1 cut(s) 254
BbvI GCAGC 3 cut(s) 413, 545, 638
BceAI ACGGC 2 cut(s) 95, 1302
BciT130I CCWGG 3 cut(s) 452, 792, 1178
BciVI GTATCC 1 cut(s) 403
BcoDI GTCTC 5 cut(s) 129, 182, 279, 866, 1175
BfaI CTAG 5 cut(s) 18, 273, 594, 807, 1055
BfmI CTRYAG 2 cut(s) 636, 705
BfrI CTTAAG 1 cut(s) 898
BfuAI ACCTGC 1 cut(s) 1159
BfuI GTATCC 1 cut(s) 403
BglII AGATCT 1 cut(s) 1234
BisI GCNGC 3 cut(s) 402, 534, 652
BlsI GCNGC 3 cut(s) 403, 535, 653
BmcAI AGTACT 1 cut(s) 711
Bme1390I CCNGG 3 cut(s) 452, 792, 1178
Bme18I GGWCC 1 cut(s) 80
BmgT120I GGNCC 1 cut(s) 80
BmiI GGNNCC 4 cut(s) 81, 796, 1022, 1206
BmrFI CCNGG 3 cut(s) 452, 792, 1178
BmrI ACTGGG 1 cut(s) 655
BmsI GCATC 7 cut(s) 388, 663, 671, 730, 742, 1081, 1333
BmuI ACTGGG 1 cut(s) 655
BpiI GAAGAC 1 cut(s) 1294
BplI GAGNNNNNCTC 2 cut(s) 1324, 1356
BpmI CTGGAG 1 cut(s) 1199
Bpu10I CCTNAGC 1 cut(s) 581
BsaHI GRCGYC 1 cut(s) 122
BsaI GGTCTC 1 cut(s) 182
BsaJI CCNNGG 2 cut(s) 414, 496
BsaWI WCCGGW 1 cut(s) 133
BsaXI ACNNNNNCTCC 4 cut(s) 1033, 1063, 1337, 1367
Bsc4I CCNNNNNNNGG 3 cut(s) 23, 457, 1214
Bse1I ACTGG 3 cut(s) 335, 650, 717
Bse21I CCTNAGG 1 cut(s) 815
Bse3DI GCAATG 2 cut(s) 28, 165
BseBI CCWGG 3 cut(s) 452, 792, 1178
BseDI CCNNGG 2 cut(s) 414, 496
BseLI CCNNNNNNNGG 3 cut(s) 23, 457, 1214
BseMI GCAATG 2 cut(s) 28, 165
BseMII CTCAG 2 cut(s) 267, 923
BseNI ACTGG 3 cut(s) 335, 650, 717
BseRI GAGGAG 3 cut(s) 323, 431, 615
BseXI GCAGC 3 cut(s) 413, 545, 638
BsgI GTGCAG 1 cut(s) 447
BshFI GGCC 2 cut(s) 813, 1317
BsiHKAI GWGCWC 1 cut(s) 254
BsiSI CCGG 1 cut(s) 134
BsiWI CGTACG 1 cut(s) 1319
BslFI GGGAC 1 cut(s) 256
BslI CCNNNNNNNGG 3 cut(s) 23, 457, 1214
BsmAI GTCTC 5 cut(s) 129, 182, 279, 866, 1175
BsmBI CGTCTC 1 cut(s) 129
BsmFI GGGAC 1 cut(s) 256
BsmI GAATGC 1 cut(s) 1138
BsnI GGCC 2 cut(s) 813, 1317
Bso31I GGTCTC 1 cut(s) 182
Bsp1286I GDGCHC 1 cut(s) 254
Bsp143I GATC 5 cut(s) 312, 523, 1161, 1204, 1234
Bsp19I CCATGG 1 cut(s) 496
BspACI CCGC 1 cut(s) 27
BspANI GGCC 2 cut(s) 813, 1317
BspCNI CTCAG 2 cut(s) 266, 924
BspLI GGNNCC 4 cut(s) 81, 796, 1022, 1206
BspMAI CTGCAG 2 cut(s) 640, 709
BspMI ACCTGC 1 cut(s) 1159
BspPI GGATC 3 cut(s) 518, 1199, 1212
BspTI CTTAAG 1 cut(s) 898
BspTNI GGTCTC 1 cut(s) 182
BsrDI GCAATG 2 cut(s) 28, 165
BsrI ACTGG 3 cut(s) 335, 650, 717
BssECI CCNNGG 2 cut(s) 414, 496
BssMI GATC 5 cut(s) 312, 523, 1161, 1204, 1234
BssNI GRCGYC 1 cut(s) 122
BssSI CACGAG 1 cut(s) 1292
BssT1I CCWWGG 1 cut(s) 496
Bst2BI CACGAG 1 cut(s) 1292
Bst2UI CCWGG 3 cut(s) 452, 792, 1178
Bst4CI ACNGT 5 cut(s) 205, 247, 295, 680, 1063
BstACI GRCGYC 1 cut(s) 122
BstAFI CTTAAG 1 cut(s) 898
BstAPI GCANNNNNTGC 1 cut(s) 434
BstC8I GCNNGC 4 cut(s) 108, 587, 591, 617
BstDEI CTNAG 5 cut(s) 253, 581, 815, 932, 1280
BstDSI CCRYGG 1 cut(s) 496
BstHHI GCGC 1 cut(s) 1138
BstKTI GATC 5 cut(s) 315, 526, 1164, 1207, 1237
BstMAI GTCTC 5 cut(s) 129, 182, 279, 866, 1175
BstMBI GATC 5 cut(s) 312, 523, 1161, 1204, 1234
BstMWI GCNNNNNNNGC 2 cut(s) 434, 704
BstNI CCWGG 3 cut(s) 452, 792, 1178
BstNSI RCATGY 2 cut(s) 593, 879
BstSCI CCNGG 3 cut(s) 450, 790, 1176
BstSFI CTRYAG 2 cut(s) 636, 705
BstV1I GCAGC 3 cut(s) 413, 545, 638
BstV2I GAAGAC 1 cut(s) 1294
BstX2I RGATCY 2 cut(s) 1204, 1234
BstYI RGATCY 2 cut(s) 1204, 1234
Bsu36I CCTNAGG 1 cut(s) 815
BsuI GTATCC 1 cut(s) 403
BsuRI GGCC 2 cut(s) 813, 1317
BtgI CCRYGG 1 cut(s) 496
BtsIMutI CAGTG 2 cut(s) 291, 447
BveI ACCTGC 1 cut(s) 1159
Cac8I GCNNGC 4 cut(s) 108, 587, 591, 617
CaiI CAGNNNCTG 1 cut(s) 92
CfoI GCGC 1 cut(s) 1138
Cfr13I GGNCC 1 cut(s) 80
CseI GACGC 3 cut(s) 111, 164, 704
Csp6I GTAC 3 cut(s) 710, 1102, 1320
CviAII CATG 6 cut(s) 457, 497, 590, 691, 876, 1128
CviQI GTAC 3 cut(s) 710, 1102, 1320
DdeI CTNAG 5 cut(s) 253, 581, 815, 932, 1280
DpnI GATC 5 cut(s) 314, 525, 1163, 1206, 1236
DpnII GATC 5 cut(s) 312, 523, 1161, 1204, 1234
EciI GGCGGA 1 cut(s) 42
Ecl136II GAGCTC 1 cut(s) 252
Eco130I CCWWGG 1 cut(s) 496
Eco147I AGGCCT 1 cut(s) 813
Eco24I GRGCYC 1 cut(s) 254
Eco31I GGTCTC 1 cut(s) 182
Eco47I GGWCC 1 cut(s) 80
Eco53kI GAGCTC 1 cut(s) 252
Eco57I CTGAAG 4 cut(s) 423, 1140, 1140, 1197
Eco81I CCTNAGG 1 cut(s) 815
EcoICRI GAGCTC 1 cut(s) 252
EcoRI GAATTC 1 cut(s) 543
EcoRII CCWGG 3 cut(s) 450, 790, 1176
EcoT14I CCWWGG 1 cut(s) 496
EcoT22I ATGCAT 2 cut(s) 664, 692
EcoT38I GRGCYC 1 cut(s) 254
ErhI CCWWGG 1 cut(s) 496
Esp3I CGTCTC 1 cut(s) 129
FaeI CATG 6 cut(s) 460, 500, 593, 694, 879, 1131
FaqI GGGAC 1 cut(s) 256
FatI CATG 6 cut(s) 456, 496, 589, 690, 875, 1127
Fnu4HI GCNGC 3 cut(s) 402, 534, 652
FriOI GRGCYC 1 cut(s) 254
Fsp4HI GCNGC 3 cut(s) 402, 534, 652
FspBI CTAG 5 cut(s) 18, 273, 594, 807, 1055
FspI TGCGCA 1 cut(s) 1137
GlaI GCGC 1 cut(s) 1137
GluI GCNGC 3 cut(s) 402, 534, 652
GsuI CTGGAG 1 cut(s) 1199
HaeIII GGCC 2 cut(s) 813, 1317
HapII CCGG 1 cut(s) 134
HgaI GACGC 3 cut(s) 111, 164, 704
HhaI GCGC 1 cut(s) 1138
Hin1I GRCGYC 1 cut(s) 122
Hin1II CATG 6 cut(s) 460, 500, 593, 694, 879, 1131
Hin6I GCGC 1 cut(s) 1136
HinP1I GCGC 1 cut(s) 1136
HincII GTYRAC 1 cut(s) 448
HindII GTYRAC 1 cut(s) 448
HindIII AAGCTT 2 cut(s) 104, 895
HinfI GANTC 7 cut(s) 30, 467, 928, 940, 1124, 1193, 1243
HpaII CCGG 1 cut(s) 134
HphI GGTGA 5 cut(s) 181, 193, 259, 539, 1012
Hpy166II GTNNAC 2 cut(s) 267, 448
Hpy188I TCNGA 7 cut(s) 256, 836, 871, 933, 945, 1120, 1159
Hpy188III TCNNGA 7 cut(s) 179, 284, 392, 853, 1202, 1215, 1382
Hpy8I GTNNAC 2 cut(s) 267, 448
Hpy99I CGWCG 4 cut(s) 158, 185, 209, 1032
HpyAV CCTTC 5 cut(s) 49, 55, 916, 1011, 1034
HpyCH4III ACNGT 5 cut(s) 205, 247, 295, 680, 1063
HpyCH4IV ACGT 1 cut(s) 183
HpyF10VI GCNNNNNNNGC 2 cut(s) 434, 704
HpyF3I CTNAG 5 cut(s) 253, 581, 815, 932, 1280
HpySE526I ACGT 1 cut(s) 183
Hsp92I GRCGYC 1 cut(s) 122
Hsp92II CATG 6 cut(s) 460, 500, 593, 694, 879, 1131
HspAI GCGC 1 cut(s) 1136
Kzo9I GATC 5 cut(s) 312, 523, 1161, 1204, 1234
LmnI GCTCC 2 cut(s) 794, 1026
Lsp1109I GCAGC 3 cut(s) 413, 545, 638
LweI GCATC 7 cut(s) 388, 663, 671, 730, 742, 1081, 1333
MaeI CTAG 5 cut(s) 18, 273, 594, 807, 1055
MaeII ACGT 1 cut(s) 183
MaeIII GTNAC 2 cut(s) 199, 902
MalI GATC 5 cut(s) 314, 525, 1163, 1206, 1236
MboI GATC 5 cut(s) 312, 523, 1161, 1204, 1234
MboII GAAGA 9 cut(s) 55, 61, 64, 380, 599, 857, 949, 1133, 1299
MfeI CAATTG 1 cut(s) 990
MflI RGATCY 2 cut(s) 1204, 1234
MhlI GDGCHC 1 cut(s) 254
MluCI AATT 6 cut(s) 383, 543, 567, 946, 990, 1396
MlyI GAGTC 2 cut(s) 476, 1237
MmeI TCCRAC 3 cut(s) 107, 325, 1232
Mph1103I ATGCAT 2 cut(s) 664, 692
MseI TTAA 9 cut(s) 11, 147, 513, 570, 890, 899, 1007, 1109, 1146
MslI CAYNNNNRTG 1 cut(s) 501
MspCI CTTAAG 1 cut(s) 898
MspI CCGG 1 cut(s) 134
MspR9I CCNGG 3 cut(s) 452, 792, 1178
MunI CAATTG 1 cut(s) 990
Mva1269I GAATGC 1 cut(s) 1138
MvaI CCWGG 3 cut(s) 452, 792, 1178
MwoI GCNNNNNNNGC 2 cut(s) 434, 704
NcoI CCATGG 1 cut(s) 496
NdeII GATC 5 cut(s) 312, 523, 1161, 1204, 1234
NlaIII CATG 6 cut(s) 460, 500, 593, 694, 879, 1131
NlaIV GGNNCC 4 cut(s) 81, 796, 1022, 1206
NmuCI GTSAC 1 cut(s) 199
NsbI TGCGCA 1 cut(s) 1137
NsiI ATGCAT 2 cut(s) 664, 692
NspI RCATGY 2 cut(s) 593, 879
PaeI GCATGC 1 cut(s) 593
PceI AGGCCT 1 cut(s) 813
PciI ACATGT 1 cut(s) 875
PctI GAATGC 1 cut(s) 1138
PfeI GAWTC 5 cut(s) 30, 928, 940, 1124, 1193
Pfl23II CGTACG 1 cut(s) 1319
PflMI CCANNNNNTGG 1 cut(s) 457
PfoI TCCNGGA 1 cut(s) 1176
PkrI GCNGC 3 cut(s) 403, 535, 653
PleI GAGTC 2 cut(s) 475, 1237
PpsI GAGTC 2 cut(s) 475, 1237
PscI ACATGT 1 cut(s) 875
PshBI ATTAAT 1 cut(s) 570
Psp124BI GAGCTC 1 cut(s) 254
Psp6I CCWGG 3 cut(s) 450, 790, 1176
PspGI CCWGG 3 cut(s) 450, 790, 1176
PspLI CGTACG 1 cut(s) 1319
PspN4I GGNNCC 4 cut(s) 81, 796, 1022, 1206
PspPI GGNCC 1 cut(s) 80
PstI CTGCAG 2 cut(s) 640, 709
PstNI CAGNNNCTG 1 cut(s) 92
PsuI RGATCY 2 cut(s) 1204, 1234
RsaI GTAC 3 cut(s) 711, 1103, 1321
RsaNI GTAC 3 cut(s) 710, 1102, 1320
RseI CAYNNNNRTG 1 cut(s) 501
SacI GAGCTC 1 cut(s) 254
SaqAI TTAA 9 cut(s) 11, 147, 513, 570, 890, 899, 1007, 1109, 1146
SatI GCNGC 3 cut(s) 402, 534, 652
Sau3AI GATC 5 cut(s) 312, 523, 1161, 1204, 1234
Sau96I GGNCC 1 cut(s) 80
ScaI AGTACT 1 cut(s) 711
SchI GAGTC 2 cut(s) 476, 1237
ScrFI CCNGG 3 cut(s) 452, 792, 1178
SduI GDGCHC 1 cut(s) 254
SfaNI GCATC 7 cut(s) 388, 663, 671, 730, 742, 1081, 1333
SfcI CTRYAG 2 cut(s) 636, 705
SinI GGWCC 1 cut(s) 80
SmiMI CAYNNNNRTG 1 cut(s) 501
SmlI CTYRAG 1 cut(s) 898
SmoI CTYRAG 1 cut(s) 898
SphI GCATGC 1 cut(s) 593
Sse9I AATT 6 cut(s) 383, 543, 567, 946, 990, 1396
SseBI AGGCCT 1 cut(s) 813
SsiI CCGC 1 cut(s) 27
SspI AATATT 1 cut(s) 1078
SspMI CTAG 5 cut(s) 18, 273, 594, 807, 1055
SstI GAGCTC 1 cut(s) 254
StuI AGGCCT 1 cut(s) 813
StyD4I CCNGG 3 cut(s) 450, 790, 1176
StyI CCWWGG 1 cut(s) 496
TaaI ACNGT 5 cut(s) 205, 247, 295, 680, 1063
TaiI ACGT 1 cut(s) 186
TaqI TCGA 5 cut(s) 33, 180, 207, 283, 1342
TasI AATT 6 cut(s) 383, 543, 567, 946, 990, 1396
TatI WGTACW 2 cut(s) 709, 1101
TfiI GAWTC 5 cut(s) 30, 928, 940, 1124, 1193
Tru1I TTAA 9 cut(s) 11, 147, 513, 570, 890, 899, 1007, 1109, 1146
Tru9I TTAA 9 cut(s) 11, 147, 513, 570, 890, 899, 1007, 1109, 1146
TscAI CASTG 2 cut(s) 298, 447
TseFI GTSAC 1 cut(s) 199
TseI GCWGC 3 cut(s) 401, 533, 651
Tsp45I GTSAC 1 cut(s) 199
TspDTI ATGAA 6 cut(s) 62, 225, 519, 783, 935, 1070
TspRI CASTG 2 cut(s) 298, 447
Van91I CCANNNNNTGG 1 cut(s) 457
Vha464I CTTAAG 1 cut(s) 898
VpaK11BI GGWCC 1 cut(s) 80
VspI ATTAAT 1 cut(s) 570
XapI RAATTY 3 cut(s) 383, 543, 946
XceI RCATGY 2 cut(s) 593, 879
XspI CTAG 5 cut(s) 18, 273, 594, 807, 1055
ZrmI AGTACT 1 cut(s) 711
Zsp2I ATGCAT 2 cut(s) 664, 692
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.