RLG00000034956

Belongs to the IPP transferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0004188
Physical Location & Seq
Reverse (-)
57591642 .. 57599933
8292 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034956

Sequence Viewer

Length: 1284 bp
ATGGAGGGTGGCGCCGCCGCTGCTGCTATTGAAACGCAGAGAAACCCAGGACGACCAGCCCATGAAGAAGAAGAAGAAGAAGAAGAAGAGAAGCCGAAGGTGGTGGTCATTATGGGACCCACAGGTTCCGGAAAGTCCAGGCTCGCCATTGATTTGGCATCCCACTTTCCCGTCGAAGTAATCAACGCCGATTCAATGCAGGTTTACAATGGTTTGGACGTTCTCACCAACAAGGTTCCTCTCCATGATCAAAAGGGAGTGCCTCATCATCTTCTGGGGACTGTAAGCCCAAACCTGGAGTTTACTGCTAAAGACTTCAGGGACTCTGCCATTCCGCTGATCAATGACATCTTGTCTCGCAACTGCCTTCCAGTCATAGTTGGGGGTACAAATTACTATATTCAGGCTCTTGTTAGTCCATTCCTTCTTGACGACACGGTAGAAGATATGGAAGAAAGCTTTTTAGGTGACCATCCAGGAGCGGGACAACAACAGACTGAGCTGGCATTTGAAGTAGACAATTCCAGTTATAGTTATGATGATCTTAAAGTCATTGATCCAATTGCAGCAAACCGAATCCATCCAAATAATCACAGAAAAATTAATCAGTACCTTAGTATGTATGCTCACCATGGTGTTCTCCCTAGCAGAATTCTTCAGGGAAAGGCAGCCAAAAACTGGGGTCGAGTTGATAACTTCAGATACAATTGCTGTTTTATATGTGTGGATGCTTCTCTTCCTGTGCTGGACCGATTTGTGGATCAAAGAGTAGATTCCATGATAGACGCTGGACTCCTTGATGAAGTCTACGAAATTTTTACTCGGAATGCAGATTATACTCGAGGTTTCCGGCAGGCCATTGGGGTTAGGGAGTTCGAAAGTTTTTTGAGTCTGTACATAACTGAAGCCAGTGACAAAGGAAATCATTTGATAGATGGGTCAATGTCCTTAAAGTCAGTAGACCTGGCTGATAAGATATTGAAAGAGAACATGAGGCTCATCCTGAATTCCTTGATTGACAGTCAACCCAACTCTGTGTTAAAAGAAGCTATTGAGAAAGTAAAACTGAACACCAGAAGACTAGTTCGTCGTCAGGTAAGTTACTTTTGCAAATATGTTTATCTGAATTCTGATGCTAAAATGTTGGTGAATCATTTTCGTACATTTCATAAATCTGTTTCCACACTAGAAACATTTCTCTGGTTGAAATTTCCGAAGCACTGGATATCTGTTCAGTATGTTGAACCTTCAATGGATAATGAATTAGGCCTCTTGGGTCTTTGA

Protein Analysis

428

Amino Acids

48.16

Weight (kDa)

5.42

Isoelectric Point (pI)

35.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IPPT PF01715 67 - 369 1.5e-52 IPP transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1086
Acc36I ACCTGC 1 cut(s) 190
AccB1I GGYRCC 1 cut(s) 11
AccB7I CCANNNNNTGG 1 cut(s) 678
AccBSI CCGCTC 1 cut(s) 482
AccI GTMKAC 3 cut(s) 516, 807, 960
AccIII TCCGGA 1 cut(s) 128
AciI CCGC 4 cut(s) 15, 18, 335, 482
AclWI GGATC 2 cut(s) 551, 768
AcsI RAATTY 5 cut(s) 651, 813, 1006, 1126, 1208
AcuI CTGAAG 4 cut(s) 301, 641, 682, 924
AcyI GRCGYC 1 cut(s) 12
AfaI GTAC 4 cut(s) 388, 611, 896, 1162
AfiI CCNNNNNNNGG 4 cut(s) 295, 482, 678, 757
AgsI TTSAA 7 cut(s) 32, 195, 512, 982, 1207, 1244, 1251
AhdI GACNNNNNGTC 1 cut(s) 352
AhlI ACTAGT 1 cut(s) 1081
AjnI CCWGG 5 cut(s) 46, 137, 294, 475, 963
AleI CACNNNNGTG 1 cut(s) 633
AluBI AGCT 3 cut(s) 459, 502, 1049
AluI AGCT 3 cut(s) 459, 502, 1049
Alw26I GTCTC 1 cut(s) 360
AlwI GGATC 2 cut(s) 551, 768
Ama87I CYCGRG 1 cut(s) 840
Aor13HI TCCGGA 1 cut(s) 128
AoxI GGCC 2 cut(s) 855, 1267
ApeKI GCWGC 4 cut(s) 20, 23, 566, 668
ApoI RAATTY 5 cut(s) 651, 813, 1006, 1126, 1208
AseI ATTAAT 1 cut(s) 603
Asp700I GAANNNNTTC 1 cut(s) 1194
AspLEI GCGC 1 cut(s) 14
AspS9I GGNCC 2 cut(s) 116, 748
AsuHPI GGTGA 4 cut(s) 217, 479, 620, 1159
AsuII TTCGAA 1 cut(s) 876
AvaI CYCGRG 1 cut(s) 840
AvaII GGWCC 2 cut(s) 116, 748
BanI GGYRCC 1 cut(s) 11
BbsI GAAGAC 1 cut(s) 1084
BbvI GCAGC 4 cut(s) 7, 10, 578, 680
BccI CCATC 3 cut(s) 480, 588, 929
BciT130I CCWGG 5 cut(s) 48, 139, 296, 477, 965
BclI TGATCA 2 cut(s) 247, 339
BcoDI GTCTC 1 cut(s) 360
BcuI ACTAGT 1 cut(s) 1081
BfaI CTAG 3 cut(s) 645, 1082, 1187
BfoI RGCGCY 1 cut(s) 15
BfuAI ACCTGC 1 cut(s) 190
BisI GCNGC 6 cut(s) 15, 18, 21, 24, 567, 669
BlsI GCNGC 6 cut(s) 16, 19, 22, 25, 568, 670
Bme1390I CCNGG 5 cut(s) 48, 139, 296, 477, 965
Bme18I GGWCC 2 cut(s) 116, 748
BmeRI GACNNNNNGTC 1 cut(s) 352
BmeT110I CYCGRG 1 cut(s) 840
BmgT120I GGNCC 2 cut(s) 116, 748
BmiI GGNNCC 5 cut(s) 13, 117, 118, 127, 237
BmrFI CCNGG 5 cut(s) 48, 139, 296, 477, 965
BmrI ACTGGG 1 cut(s) 688
BmsI GCATC 3 cut(s) 167, 718, 1123
BmuI ACTGGG 1 cut(s) 688
BpiI GAAGAC 1 cut(s) 1084
BpmI CTGGAG 1 cut(s) 317
Bpu14I TTCGAA 1 cut(s) 876
BsaHI GRCGYC 1 cut(s) 12
BsaJI CCNNGG 2 cut(s) 46, 631
BsaWI WCCGGW 1 cut(s) 128
Bsc4I CCNNNNNNNGG 4 cut(s) 295, 482, 678, 757
Bse1I ACTGG 5 cut(s) 371, 525, 683, 909, 1226
BseAI TCCGGA 1 cut(s) 128
BseBI CCWGG 5 cut(s) 48, 139, 296, 477, 965
BseDI CCNNGG 2 cut(s) 46, 631
BseGI GGATG 5 cut(s) 158, 472, 580, 733, 999
BseLI CCNNNNNNNGG 4 cut(s) 295, 482, 678, 757
BseMII CTCAG 1 cut(s) 489
BseNI ACTGG 5 cut(s) 371, 525, 683, 909, 1226
BseXI GCAGC 4 cut(s) 7, 10, 578, 680
BshFI GGCC 2 cut(s) 857, 1269
BshNI GGYRCC 1 cut(s) 11
BsiHKCI CYCGRG 1 cut(s) 840
BsiSI CCGG 2 cut(s) 129, 850
BslFI GGGAC 4 cut(s) 129, 292, 335, 498
BslI CCNNNNNNNGG 4 cut(s) 295, 482, 678, 757
BsmAI GTCTC 1 cut(s) 360
BsmFI GGGAC 4 cut(s) 129, 292, 335, 498
BsmI GAATGC 1 cut(s) 832
BsnI GGCC 2 cut(s) 857, 1269
BsoBI CYCGRG 1 cut(s) 840
Bsp119I TTCGAA 1 cut(s) 876
Bsp13I TCCGGA 1 cut(s) 128
Bsp1407I TGTACA 1 cut(s) 894
Bsp143I GATC 5 cut(s) 247, 339, 541, 556, 760
Bsp19I CCATGG 1 cut(s) 631
BspACI CCGC 4 cut(s) 15, 18, 335, 482
BspANI GGCC 2 cut(s) 857, 1269
BspCNI CTCAG 1 cut(s) 490
BspEI TCCGGA 1 cut(s) 128
BspLI GGNNCC 5 cut(s) 13, 117, 118, 127, 237
BspMI ACCTGC 1 cut(s) 190
BspPI GGATC 2 cut(s) 551, 768
BspT104I TTCGAA 1 cut(s) 876
BspT107I GGYRCC 1 cut(s) 11
BsrBI CCGCTC 1 cut(s) 482
BsrGI TGTACA 1 cut(s) 894
BsrI ACTGG 5 cut(s) 371, 525, 683, 909, 1226
BssECI CCNNGG 2 cut(s) 46, 631
BssMI GATC 5 cut(s) 247, 339, 541, 556, 760
BssNI GRCGYC 1 cut(s) 12
BssT1I CCWWGG 1 cut(s) 631
Bst2UI CCWGG 5 cut(s) 48, 139, 296, 477, 965
Bst4CI ACNGT 3 cut(s) 283, 439, 1022
Bst6I CTCTTC 2 cut(s) 81, 741
BstACI GRCGYC 1 cut(s) 12
BstAUI TGTACA 1 cut(s) 894
BstBI TTCGAA 1 cut(s) 876
BstC8I GCNNGC 3 cut(s) 144, 504, 855
BstDEI CTNAG 2 cut(s) 498, 614
BstDSI CCRYGG 1 cut(s) 631
BstEII GGTNACC 1 cut(s) 467
BstF5I GGATG 5 cut(s) 158, 472, 580, 733, 999
BstH2I RGCGCY 1 cut(s) 15
BstHHI GCGC 1 cut(s) 14
BstKTI GATC 5 cut(s) 250, 342, 544, 559, 763
BstMAI GTCTC 1 cut(s) 360
BstMBI GATC 5 cut(s) 247, 339, 541, 556, 760
BstMWI GCNNNNNNNGC 2 cut(s) 20, 23
BstNI CCWGG 5 cut(s) 48, 139, 296, 477, 965
BstPI GGTNACC 1 cut(s) 467
BstSCI CCNGG 5 cut(s) 46, 137, 294, 475, 963
BstV1I GCAGC 4 cut(s) 7, 10, 578, 680
BstV2I GAAGAC 1 cut(s) 1084
BstXI CCANNNNNNTGG 1 cut(s) 154
BsuRI GGCC 2 cut(s) 857, 1269
BtgI CCRYGG 1 cut(s) 631
BtsCI GGATG 5 cut(s) 158, 472, 580, 733, 999
BtsIMutI CAGTG 2 cut(s) 916, 1219
BveI ACCTGC 1 cut(s) 190
Cac8I GCNNGC 3 cut(s) 144, 504, 855
CfoI GCGC 1 cut(s) 14
Cfr13I GGNCC 2 cut(s) 116, 748
CseI GACGC 1 cut(s) 794
Csp6I GTAC 4 cut(s) 387, 610, 895, 1161
CviAII CATG 5 cut(s) 62, 245, 632, 778, 991
CviQI GTAC 4 cut(s) 387, 610, 895, 1161
DdeI CTNAG 2 cut(s) 498, 614
DinI GGCGCC 1 cut(s) 13
DpnI GATC 5 cut(s) 249, 341, 543, 558, 762
DpnII GATC 5 cut(s) 247, 339, 541, 556, 760
DrdI GACNNNNNNGTC 1 cut(s) 1086
DriI GACNNNNNGTC 1 cut(s) 352
DseDI GACNNNNNNGTC 1 cut(s) 1086
Eam1104I CTCTTC 2 cut(s) 81, 741
Eam1105I GACNNNNNGTC 1 cut(s) 352
EarI CTCTTC 2 cut(s) 81, 741
Eco130I CCWWGG 1 cut(s) 631
Eco147I AGGCCT 1 cut(s) 1269
Eco32I GATATC 1 cut(s) 1227
Eco47I GGWCC 2 cut(s) 116, 748
Eco57I CTGAAG 4 cut(s) 301, 641, 682, 924
Eco88I CYCGRG 1 cut(s) 840
Eco91I GGTNACC 1 cut(s) 467
EcoO109I RGGNCCY 1 cut(s) 116
EcoO65I GGTNACC 1 cut(s) 467
EcoRI GAATTC 3 cut(s) 651, 1006, 1126
EcoRII CCWGG 5 cut(s) 46, 137, 294, 475, 963
EcoRV GATATC 1 cut(s) 1227
EcoT14I CCWWGG 1 cut(s) 631
EgeI GGCGCC 1 cut(s) 13
EheI GGCGCC 1 cut(s) 13
ErhI CCWWGG 1 cut(s) 631
FaeI CATG 5 cut(s) 65, 248, 635, 781, 994
FaqI GGGAC 4 cut(s) 129, 292, 335, 498
FatI CATG 5 cut(s) 61, 244, 631, 777, 990
FauI CCCGC 1 cut(s) 475
FbaI TGATCA 2 cut(s) 247, 339
FblI GTMKAC 3 cut(s) 516, 807, 960
Fnu4HI GCNGC 6 cut(s) 15, 18, 21, 24, 567, 669
FokI GGATG 5 cut(s) 145, 459, 567, 740, 986
Fsp4HI GCNGC 6 cut(s) 15, 18, 21, 24, 567, 669
FspBI CTAG 3 cut(s) 645, 1082, 1187
GlaI GCGC 1 cut(s) 13
GluI GCNGC 6 cut(s) 15, 18, 21, 24, 567, 669
GsuI CTGGAG 1 cut(s) 317
HaeII RGCGCY 1 cut(s) 15
HaeIII GGCC 2 cut(s) 857, 1269
HapII CCGG 2 cut(s) 129, 850
HgaI GACGC 1 cut(s) 794
HhaI GCGC 1 cut(s) 14
Hin1I GRCGYC 1 cut(s) 12
Hin1II CATG 5 cut(s) 65, 248, 635, 781, 994
Hin6I GCGC 1 cut(s) 12
HinP1I GCGC 1 cut(s) 12
HincII GTYRAC 1 cut(s) 1025
HindII GTYRAC 1 cut(s) 1025
HindIII AAGCTT 1 cut(s) 457
HinfI GANTC 7 cut(s) 191, 323, 576, 773, 792, 889, 1150
HpaII CCGG 2 cut(s) 129, 850
HphI GGTGA 4 cut(s) 217, 479, 620, 1159
Hpy166II GTNNAC 6 cut(s) 205, 303, 517, 808, 961, 1025
Hpy188I TCNGA 5 cut(s) 701, 825, 1125, 1132, 1215
Hpy188III TCNNGA 3 cut(s) 129, 428, 1003
Hpy8I GTNNAC 6 cut(s) 205, 303, 517, 808, 961, 1025
Hpy99I CGWCG 2 cut(s) 176, 1092
HpyAV CCTTC 4 cut(s) 91, 377, 434, 1257
HpyCH4III ACNGT 3 cut(s) 283, 439, 1022
HpyCH4IV ACGT 1 cut(s) 219
HpyCH4V TGCA 4 cut(s) 199, 566, 830, 1110
HpyF10VI GCNNNNNNNGC 2 cut(s) 20, 23
HpyF3I CTNAG 2 cut(s) 498, 614
HpySE526I ACGT 1 cut(s) 219
Hsp92I GRCGYC 1 cut(s) 12
Hsp92II CATG 5 cut(s) 65, 248, 635, 781, 994
HspAI GCGC 1 cut(s) 12
KasI GGCGCC 1 cut(s) 11
KflI GGGWCCC 1 cut(s) 116
Kpn2I TCCGGA 1 cut(s) 128
Ksp22I TGATCA 2 cut(s) 247, 339
Kzo9I GATC 5 cut(s) 247, 339, 541, 556, 760
LmnI GCTCC 1 cut(s) 479
Lsp1109I GCAGC 4 cut(s) 7, 10, 578, 680
LweI GCATC 3 cut(s) 167, 718, 1123
MaeI CTAG 3 cut(s) 645, 1082, 1187
MaeII ACGT 1 cut(s) 219
MaeIII GTNAC 3 cut(s) 467, 911, 1100
MalI GATC 5 cut(s) 249, 341, 543, 558, 762
MbiI CCGCTC 1 cut(s) 482
MboI GATC 5 cut(s) 247, 339, 541, 556, 760
MfeI CAATTG 2 cut(s) 561, 706
Mly113I GGCGCC 1 cut(s) 12
MlyI GAGTC 3 cut(s) 317, 786, 898
MnlI CCTC 5 cut(s) 249, 273, 836, 987, 1280
MroI TCCGGA 1 cut(s) 128
MroXI GAANNNNTTC 1 cut(s) 1194
MseI TTAA 4 cut(s) 546, 603, 950, 1040
MslI CAYNNNNRTG 1 cut(s) 633
MspA1I CMGCKG 2 cut(s) 20, 337
MspI CCGG 2 cut(s) 129, 850
MspR9I CCNGG 5 cut(s) 48, 139, 296, 477, 965
MunI CAATTG 2 cut(s) 561, 706
Mva1269I GAATGC 1 cut(s) 832
MvaI CCWGG 5 cut(s) 48, 139, 296, 477, 965
MwoI GCNNNNNNNGC 2 cut(s) 20, 23
NarI GGCGCC 1 cut(s) 12
NcoI CCATGG 1 cut(s) 631
NdeII GATC 5 cut(s) 247, 339, 541, 556, 760
NlaIII CATG 5 cut(s) 65, 248, 635, 781, 994
NlaIV GGNNCC 5 cut(s) 13, 117, 118, 127, 237
NmuCI GTSAC 2 cut(s) 467, 911
NspV TTCGAA 1 cut(s) 876
OliI CACNNNNGTG 1 cut(s) 633
PaeR7I CTCGAG 1 cut(s) 840
PceI AGGCCT 1 cut(s) 1269
PctI GAATGC 1 cut(s) 832
PdmI GAANNNNTTC 1 cut(s) 1194
PfeI GAWTC 4 cut(s) 191, 576, 773, 1150
PflMI CCANNNNNTGG 1 cut(s) 678
PfoI TCCNGGA 1 cut(s) 475
PkrI GCNGC 6 cut(s) 16, 19, 22, 25, 568, 670
PleI GAGTC 3 cut(s) 317, 786, 897
PluTI GGCGCC 1 cut(s) 15
PpsI GAGTC 3 cut(s) 317, 786, 897
PpuMI RGGWCCY 1 cut(s) 116
PshBI ATTAAT 1 cut(s) 603
Psp5II RGGWCCY 1 cut(s) 116
Psp6I CCWGG 5 cut(s) 46, 137, 294, 475, 963
PspEI GGTNACC 1 cut(s) 467
PspGI CCWGG 5 cut(s) 46, 137, 294, 475, 963
PspN4I GGNNCC 5 cut(s) 13, 117, 118, 127, 237
PspPI GGNCC 2 cut(s) 116, 748
PspPPI RGGWCCY 1 cut(s) 116
PspXI VCTCGAGB 1 cut(s) 840
RsaI GTAC 4 cut(s) 388, 611, 896, 1162
RsaNI GTAC 4 cut(s) 387, 610, 895, 1161
RseI CAYNNNNRTG 1 cut(s) 633
SaqAI TTAA 4 cut(s) 546, 603, 950, 1040
SatI GCNGC 6 cut(s) 15, 18, 21, 24, 567, 669
Sau3AI GATC 5 cut(s) 247, 339, 541, 556, 760
Sau96I GGNCC 2 cut(s) 116, 748
SchI GAGTC 3 cut(s) 317, 786, 898
ScrFI CCNGG 5 cut(s) 48, 139, 296, 477, 965
SfaNI GCATC 3 cut(s) 167, 718, 1123
SfoI GGCGCC 1 cut(s) 13
Sfr274I CTCGAG 1 cut(s) 840
SfuI TTCGAA 1 cut(s) 876
SinI GGWCC 2 cut(s) 116, 748
SlaI CTCGAG 1 cut(s) 840
SmiMI CAYNNNNRTG 1 cut(s) 633
SmlI CTYRAG 1 cut(s) 840
SmoI CTYRAG 1 cut(s) 840
SpeI ACTAGT 1 cut(s) 1081
SseBI AGGCCT 1 cut(s) 1269
SsiI CCGC 4 cut(s) 15, 18, 335, 482
SspDI GGCGCC 1 cut(s) 11
SspMI CTAG 3 cut(s) 645, 1082, 1187
StuI AGGCCT 1 cut(s) 1269
StyD4I CCNGG 5 cut(s) 46, 137, 294, 475, 963
StyI CCWWGG 1 cut(s) 631
TaaI ACNGT 3 cut(s) 283, 439, 1022
TaiI ACGT 1 cut(s) 222
TaqI TCGA 4 cut(s) 174, 685, 841, 876
TaqII GACCGA 1 cut(s) 765
TatI WGTACW 1 cut(s) 894
TauI GCSGC 2 cut(s) 17, 20
TfiI GAWTC 4 cut(s) 191, 576, 773, 1150
Tru1I TTAA 4 cut(s) 546, 603, 950, 1040
Tru9I TTAA 4 cut(s) 546, 603, 950, 1040
TscAI CASTG 2 cut(s) 916, 1226
TseFI GTSAC 2 cut(s) 467, 911
TseI GCWGC 4 cut(s) 20, 23, 566, 668
Tsp45I GTSAC 2 cut(s) 467, 911
TspDTI ATGAA 4 cut(s) 78, 816, 1157, 1275
TspRI CASTG 2 cut(s) 916, 1226
Van91I CCANNNNNTGG 1 cut(s) 678
VpaK11BI GGWCC 2 cut(s) 116, 748
VspI ATTAAT 1 cut(s) 603
XapI RAATTY 5 cut(s) 651, 813, 1006, 1126, 1208
XhoI CTCGAG 1 cut(s) 840
XmiI GTMKAC 3 cut(s) 516, 807, 960
XmnI GAANNNNTTC 1 cut(s) 1194
XspI CTAG 3 cut(s) 645, 1082, 1187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.