Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004188

Physical Location & Seq

Genomic Coordinates Forward (+)

33293351 .. 33294189

Gene Structure 839 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0289900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGAGCTCCAAACCCCGCAACAAATGGAACCACAACAACAGCAACCAACAGAGGAGGGAGGAAACACCCAAGCAGCTGGAAGTAGTGCCAACATGGATTTCTGGCGAAGCCGTACCAGATGGATTCCTACTCCAGAACAAATAAGAATCCTCAAGGATCTTTACTACGTCAAGGGATTTAAGTGCCCATCTACAGAGCACATTCACGAGATCTGCCTCCAGCTGAACCAGTATGGACATGTTGAGGGTAAGAACATTTACTTTTGGTTCCAGAACGTCAGGGCTCGAGAGAAGCAGATGAATAGGTGTAATCAGGCTGCTCCAGTGCCCATGGGAACTAGTTCTCTTGGTACTGGTGGATCCATCGATCTCAATTTTGGGTCCACTGGTTCTACTGGTGCTGGTGGATCCATCGACATCAATTTTGGGCCAGCTGGTGGATCCATCGACATCAATTTTGGGTCCACTAGTTCTACTGATGATGGTAGATCCATTGATCTCAACTTTGGTTCCACCTATTCTACTGGAGGACAAACATCCCTACAACAACGAGGAGGAGATCACCAGGAGGTCCAAACTCTTCCTCTGTTCCCCGTGCACAGCGAGGACGTCTTTGGTAACCTGAAGACTACTTCCGAGGAAGGTAGCGCATTTGGTTACTATTCTGGTGGCTCAGGCGGTTACCACAGTGGCTCAAACGTTTCTCTTGAGCTCAGCCTCAACCCATCCGGAGCTGCTGACCAGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009058 GO:0009308 GO:0009451 GO:0009690 GO:0009691 GO:0009824 GO:0009987 GO:0010467 GO:0010817 GO:0016070 GO:0016740 GO:0016765 GO:0034470 GO:0034641 GO:0034660 GO:0034754 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0065007 GO:0065008 GO:0071704 GO:0090304 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00908 ko01100 ko01110 map00908 map01100 map01110

Pfam Domains

Protein Families

IPPT

Protein Analysis

249

Amino Acids

26.76

Weight (kDa)

4.96

Isoelectric Point (pI)

46.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	38 - 99	1.7e-09	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004188)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27760
fragaria_vesca	FvH4_3g29650 FvH4_3g29650 FvH4_3g29650 FvH4_3g29650 FvH4_3g29650 FvH4_3g29650 FvH4_3g29650 FvH4_3g29650 FvH4_3g29650 FvH4_3g29650 FvH4_3g29650 FvH4_3g29650
malus_domestica	MD03G1136100.v1.1
prunus_persica	Prupe.6G120800_v2.0.a1 Prupe.6G120800_v2.0.a1 Prupe.6G120800_v2.0.a1 Prupe.6G120800_v2.0.a1 Prupe.6G120800_v2.0.a1 Prupe.6G120800_v2.0.a1 Prupe.6G120800_v2.0.a1
pyrus_communis	pycom03g09200
rosa_chinensis	RchiOBHm_Chr5g0055011
rosa_laevigata	RLG00000034956
rosa_multiflora	Rmu_sc0003653.1_g000029
rosa_roxburghii	Rroxscaffold_1G00025500
rosa_rugosa	Rorug05G0289900 Rorug05G0290000
rosa_samantha	Rh5AG360000 Rh5BG371000 Rh5CG393300 Rh5DG384800
rosa_wichuraiana	Rw5G033870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	612
AccB7I	CCANNNNNTGG	1 cut(s)	437
AccIII	TCCGGA	1 cut(s)	728
AciI	CCGC	2 cut(s)	17, 678
AclI	AACGTT	1 cut(s)	699
AclWI	GGATC	8 cut(s)	165, 354, 367, 402, 415, 435, 448, 483
AcuI	CTGAAG	1 cut(s)	644
AcyI	GRCGYC	1 cut(s)	609
AfaI	GTAC	2 cut(s)	115, 352
AfiI	CCNNNNNNNGG	1 cut(s)	437
AflIII	ACRYGT	1 cut(s)	238
AhlI	ACTAGT	2 cut(s)	338, 467
AjnI	CCWGG	2 cut(s)	564, 741
AjuI	GAANNNNNNNTTGG	2 cut(s)	83, 115
AluBI	AGCT	6 cut(s)	7, 77, 223, 434, 712, 734
AluI	AGCT	6 cut(s)	7, 77, 223, 434, 712, 734
Alw21I	GWGCWC	4 cut(s)	9, 201, 600, 714
Alw44I	GTGCAC	1 cut(s)	596
AlwI	GGATC	8 cut(s)	165, 354, 367, 402, 415, 435, 448, 483
Ama87I	CYCGRG	1 cut(s)	285
Aor13HI	TCCGGA	1 cut(s)	728
AoxI	GGCC	1 cut(s)	428
ApaLI	GTGCAC	1 cut(s)	596
ApeKI	GCWGC	3 cut(s)	74, 317, 734
ArsI	GACNNNNNNTTYG	4 cut(s)	407, 439, 440, 472
Asp700I	GAANNNNTTC	1 cut(s)	340
AspLEI	GCGC	1 cut(s)	650
AspS9I	GGNCC	4 cut(s)	381, 428, 462, 571
AsuHPI	GGTGA	1 cut(s)	554
AvaI	CYCGRG	1 cut(s)	285
AvaII	GGWCC	3 cut(s)	381, 462, 571
BaeGI	GKGCMC	3 cut(s)	188, 330, 600
BamHI	GGATCC	3 cut(s)	359, 407, 440
BanII	GRGCYC	3 cut(s)	9, 286, 714
BauI	CACGAG	1 cut(s)	206
BbsI	GAAGAC	1 cut(s)	632
Bbv12I	GWGCWC	4 cut(s)	9, 201, 600, 714
BbvI	GCAGC	3 cut(s)	86, 304, 721
BccI	CCATC	7 cut(s)	114, 196, 371, 419, 452, 476, 733
BceAI	ACGGC	1 cut(s)	96
BciT130I	CCWGG	2 cut(s)	566, 743
BcuI	ACTAGT	2 cut(s)	338, 467
BfaI	CTAG	2 cut(s)	339, 468
BfmI	CTRYAG	1 cut(s)	192
BglII	AGATCT	1 cut(s)	210
BisI	GCNGC	3 cut(s)	75, 318, 735
BlpI	GCTNAGC	1 cut(s)	713
BlsI	GCNGC	3 cut(s)	76, 319, 736
Bme1390I	CCNGG	2 cut(s)	566, 743
Bme18I	GGWCC	3 cut(s)	381, 462, 571
BmeT110I	CYCGRG	1 cut(s)	285
BmgT120I	GGNCC	4 cut(s)	381, 428, 462, 571
BmiI	GGNNCC	8 cut(s)	30, 269, 361, 382, 409, 442, 463, 511
BmrFI	CCNGG	2 cut(s)	566, 743
BpiI	GAAGAC	1 cut(s)	632
BpmI	CTGGAG	4 cut(s)	117, 203, 306, 546
Bpu10I	CCTNAGC	1 cut(s)	673
Bpu1102I	GCTNAGC	1 cut(s)	713
BpuEI	CTTGAG	2 cut(s)	137, 728
Bsa29I	ATCGAT	1 cut(s)	366
BsaHI	GRCGYC	1 cut(s)	609
BsaJI	CCNNGG	2 cut(s)	330, 636
BsaWI	WCCGGW	1 cut(s)	728
Bsc4I	CCNNNNNNNGG	1 cut(s)	437
Bse1I	ACTGG	6 cut(s)	229, 323, 358, 391, 400, 529
BseAI	TCCGGA	1 cut(s)	728
BseBI	CCWGG	2 cut(s)	566, 743
BseCI	ATCGAT	1 cut(s)	366
BseDI	CCNNGG	2 cut(s)	330, 636
BseGI	GGATG	2 cut(s)	536, 725
BseLI	CCNNNNNNNGG	1 cut(s)	437
BseMII	CTCAG	2 cut(s)	687, 727
BseNI	ACTGG	6 cut(s)	229, 323, 358, 391, 400, 529
BseRI	GAGGAG	3 cut(s)	68, 567, 570
BseSI	GKGCMC	3 cut(s)	188, 330, 600
BseXI	GCAGC	3 cut(s)	86, 304, 721
BshFI	GGCC	1 cut(s)	430
BshVI	ATCGAT	1 cut(s)	366
BsiHKAI	GWGCWC	4 cut(s)	9, 201, 600, 714
BsiHKCI	CYCGRG	1 cut(s)	285
BsiSI	CCGG	1 cut(s)	729
BslI	CCNNNNNNNGG	1 cut(s)	437
BsnI	GGCC	1 cut(s)	430
BsoBI	CYCGRG	1 cut(s)	285
Bsp1286I	GDGCHC	7 cut(s)	9, 188, 201, 286, 330, 600, 714
Bsp13I	TCCGGA	1 cut(s)	728
Bsp143I	GATC	9 cut(s)	157, 210, 359, 367, 407, 440, 488, 496, 559
Bsp1720I	GCTNAGC	1 cut(s)	713
Bsp19I	CCATGG	1 cut(s)	330
BspACI	CCGC	2 cut(s)	17, 678
BspANI	GGCC	1 cut(s)	430
BspCNI	CTCAG	2 cut(s)	686, 726
BspDI	ATCGAT	1 cut(s)	366
BspEI	TCCGGA	1 cut(s)	728
BspLI	GGNNCC	8 cut(s)	30, 269, 361, 382, 409, 442, 463, 511
BspPI	GGATC	8 cut(s)	165, 354, 367, 402, 415, 435, 448, 483
BsrI	ACTGG	6 cut(s)	229, 323, 358, 391, 400, 529
BssECI	CCNNGG	2 cut(s)	330, 636
BssMI	GATC	9 cut(s)	157, 210, 359, 367, 407, 440, 488, 496, 559
BssNI	GRCGYC	1 cut(s)	609
BssSI	CACGAG	1 cut(s)	206
BssT1I	CCWWGG	1 cut(s)	330
Bst2BI	CACGAG	1 cut(s)	206
Bst2UI	CCWGG	2 cut(s)	566, 743
Bst4CI	ACNGT	1 cut(s)	689
Bst6I	CTCTTC	1 cut(s)	585
BstACI	GRCGYC	1 cut(s)	609
BstC8I	GCNNGC	1 cut(s)	432
BstDEI	CTNAG	3 cut(s)	673, 713, 747
BstDSI	CCRYGG	1 cut(s)	330
BstEII	GGTNACC	2 cut(s)	617, 680
BstF5I	GGATG	2 cut(s)	536, 725
BstHHI	GCGC	1 cut(s)	650
BstKTI	GATC	9 cut(s)	160, 213, 362, 370, 410, 443, 491, 499, 562
BstMBI	GATC	9 cut(s)	157, 210, 359, 367, 407, 440, 488, 496, 559
BstMWI	GCNNNNNNNGC	1 cut(s)	743
BstNI	CCWGG	2 cut(s)	566, 743
BstNSI	RCATGY	1 cut(s)	242
BstPI	GGTNACC	2 cut(s)	617, 680
BstSCI	CCNGG	2 cut(s)	564, 741
BstSFI	CTRYAG	1 cut(s)	192
BstSLI	GKGCMC	3 cut(s)	188, 330, 600
BstV1I	GCAGC	3 cut(s)	86, 304, 721
BstV2I	GAAGAC	1 cut(s)	632
BstX2I	RGATCY	6 cut(s)	157, 210, 359, 407, 440, 488
BstXI	CCANNNNNNTGG	1 cut(s)	77
BstYI	RGATCY	6 cut(s)	157, 210, 359, 407, 440, 488
Bsu15I	ATCGAT	1 cut(s)	366
BsuRI	GGCC	1 cut(s)	430
BsuTUI	ATCGAT	1 cut(s)	366
BtgI	CCRYGG	1 cut(s)	330
BtsCI	GGATG	2 cut(s)	536, 725
BtsIMutI	CAGTG	3 cut(s)	330, 384, 694
Cac8I	GCNNGC	1 cut(s)	432
CfoI	GCGC	1 cut(s)	650
Cfr13I	GGNCC	4 cut(s)	381, 428, 462, 571
ClaI	ATCGAT	1 cut(s)	366
Csp6I	GTAC	2 cut(s)	114, 351
CviAII	CATG	3 cut(s)	94, 239, 331
CviQI	GTAC	2 cut(s)	114, 351
DdeI	CTNAG	3 cut(s)	673, 713, 747
DpnI	GATC	9 cut(s)	159, 212, 361, 369, 409, 442, 490, 498, 561
DpnII	GATC	9 cut(s)	157, 210, 359, 367, 407, 440, 488, 496, 559
Eam1104I	CTCTTC	1 cut(s)	585
EarI	CTCTTC	1 cut(s)	585
Ecl136II	GAGCTC	2 cut(s)	7, 712
Eco130I	CCWWGG	1 cut(s)	330
Eco24I	GRGCYC	3 cut(s)	9, 286, 714
Eco47I	GGWCC	3 cut(s)	381, 462, 571
Eco53kI	GAGCTC	2 cut(s)	7, 712
Eco57I	CTGAAG	1 cut(s)	644
Eco88I	CYCGRG	1 cut(s)	285
Eco91I	GGTNACC	2 cut(s)	617, 680
EcoICRI	GAGCTC	2 cut(s)	7, 712
EcoO65I	GGTNACC	2 cut(s)	617, 680
EcoRII	CCWGG	2 cut(s)	564, 741
EcoT14I	CCWWGG	1 cut(s)	330
EcoT38I	GRGCYC	3 cut(s)	9, 286, 714
ErhI	CCWWGG	1 cut(s)	330
FaeI	CATG	3 cut(s)	97, 242, 334
FaiI	YATR	4 cut(s)	95, 234, 240, 332
FatI	CATG	3 cut(s)	93, 238, 330
FauI	CCCGC	1 cut(s)	24
Fnu4HI	GCNGC	3 cut(s)	75, 318, 735
FokI	GGATG	2 cut(s)	523, 712
FriOI	GRGCYC	3 cut(s)	9, 286, 714
Fsp4HI	GCNGC	3 cut(s)	75, 318, 735
FspBI	CTAG	2 cut(s)	339, 468
GlaI	GCGC	1 cut(s)	649
GluI	GCNGC	3 cut(s)	75, 318, 735
GsuI	CTGGAG	4 cut(s)	117, 203, 306, 546
HaeIII	GGCC	1 cut(s)	430
HapII	CCGG	1 cut(s)	729
HhaI	GCGC	1 cut(s)	650
Hin1I	GRCGYC	1 cut(s)	609
Hin1II	CATG	3 cut(s)	97, 242, 334
Hin6I	GCGC	1 cut(s)	648
HinP1I	GCGC	1 cut(s)	648
HinfI	GANTC	2 cut(s)	124, 147
HpaII	CCGG	1 cut(s)	729
HphI	GGTGA	1 cut(s)	554
Hpy166II	GTNNAC	3 cut(s)	384, 465, 598
Hpy188I	TCNGA	1 cut(s)	637
Hpy188III	TCNNGA	6 cut(s)	134, 206, 271, 287, 707, 729
Hpy8I	GTNNAC	3 cut(s)	384, 465, 598
HpyAV	CCTTC	1 cut(s)	635
HpyCH4III	ACNGT	1 cut(s)	689
HpyCH4IV	ACGT	4 cut(s)	168, 276, 609, 699
HpyCH4V	TGCA	1 cut(s)	598
HpyF10VI	GCNNNNNNNGC	1 cut(s)	743
HpyF3I	CTNAG	3 cut(s)	673, 713, 747
HpySE526I	ACGT	4 cut(s)	168, 276, 609, 699
Hsp92I	GRCGYC	1 cut(s)	609
Hsp92II	CATG	3 cut(s)	97, 242, 334
HspAI	GCGC	1 cut(s)	648
Kpn2I	TCCGGA	1 cut(s)	728
Kzo9I	GATC	9 cut(s)	157, 210, 359, 367, 407, 440, 488, 496, 559
LmnI	GCTCC	4 cut(s)	4, 12, 325, 731
Lsp1109I	GCAGC	3 cut(s)	86, 304, 721
MaeI	CTAG	2 cut(s)	339, 468
MaeII	ACGT	4 cut(s)	168, 276, 609, 699
MaeIII	GTNAC	3 cut(s)	617, 656, 680
MalI	GATC	9 cut(s)	159, 212, 361, 369, 409, 442, 490, 498, 561
MboI	GATC	9 cut(s)	157, 210, 359, 367, 407, 440, 488, 496, 559
MboII	GAAGA	2 cut(s)	572, 637
MflI	RGATCY	6 cut(s)	157, 210, 359, 407, 440, 488
MhlI	GDGCHC	7 cut(s)	9, 188, 201, 286, 330, 600, 714
MluCI	AATT	3 cut(s)	373, 421, 454
MroI	TCCGGA	1 cut(s)	728
MroXI	GAANNNNTTC	1 cut(s)	340
MseI	TTAA	1 cut(s)	180
MspA1I	CMGCKG	3 cut(s)	77, 223, 434
MspI	CCGG	1 cut(s)	729
MspR9I	CCNGG	2 cut(s)	566, 743
MvaI	CCWGG	2 cut(s)	566, 743
MwoI	GCNNNNNNNGC	1 cut(s)	743
NcoI	CCATGG	1 cut(s)	330
NdeII	GATC	9 cut(s)	157, 210, 359, 367, 407, 440, 488, 496, 559
NlaIII	CATG	3 cut(s)	97, 242, 334
NlaIV	GGNNCC	8 cut(s)	30, 269, 361, 382, 409, 442, 463, 511
NspI	RCATGY	1 cut(s)	242
PaeR7I	CTCGAG	1 cut(s)	285
PciI	ACATGT	1 cut(s)	238
PdmI	GAANNNNTTC	1 cut(s)	340
PfeI	GAWTC	2 cut(s)	124, 147
PflMI	CCANNNNNTGG	1 cut(s)	437
PkrI	GCNGC	3 cut(s)	76, 319, 736
PscI	ACATGT	1 cut(s)	238
Psp124BI	GAGCTC	2 cut(s)	9, 714
Psp1406I	AACGTT	1 cut(s)	699
Psp6I	CCWGG	2 cut(s)	564, 741
PspEI	GGTNACC	2 cut(s)	617, 680
PspGI	CCWGG	2 cut(s)	564, 741
PspN4I	GGNNCC	8 cut(s)	30, 269, 361, 382, 409, 442, 463, 511
PspPI	GGNCC	4 cut(s)	381, 428, 462, 571
PsuI	RGATCY	6 cut(s)	157, 210, 359, 407, 440, 488
PvuII	CAGCTG	3 cut(s)	77, 223, 434
RsaI	GTAC	2 cut(s)	115, 352
RsaNI	GTAC	2 cut(s)	114, 351
SacI	GAGCTC	2 cut(s)	9, 714
SaqAI	TTAA	1 cut(s)	180
SatI	GCNGC	3 cut(s)	75, 318, 735
Sau3AI	GATC	9 cut(s)	157, 210, 359, 367, 407, 440, 488, 496, 559
Sau96I	GGNCC	4 cut(s)	381, 428, 462, 571
ScrFI	CCNGG	2 cut(s)	566, 743
SduI	GDGCHC	7 cut(s)	9, 188, 201, 286, 330, 600, 714
SfcI	CTRYAG	1 cut(s)	192
Sfr274I	CTCGAG	1 cut(s)	285
SinI	GGWCC	3 cut(s)	381, 462, 571
SlaI	CTCGAG	1 cut(s)	285
SmlI	CTYRAG	3 cut(s)	152, 285, 707
SmoI	CTYRAG	3 cut(s)	152, 285, 707
SpeI	ACTAGT	2 cut(s)	338, 467
Sse9I	AATT	3 cut(s)	373, 421, 454
SsiI	CCGC	2 cut(s)	17, 678
SspMI	CTAG	2 cut(s)	339, 468
SstI	GAGCTC	2 cut(s)	9, 714
StyD4I	CCNGG	2 cut(s)	564, 741
StyI	CCWWGG	1 cut(s)	330
TaaI	ACNGT	1 cut(s)	689
TaiI	ACGT	4 cut(s)	171, 279, 612, 702
TaqI	TCGA	4 cut(s)	286, 366, 414, 447
TasI	AATT	3 cut(s)	373, 421, 454
TfiI	GAWTC	2 cut(s)	124, 147
Tru1I	TTAA	1 cut(s)	180
Tru9I	TTAA	1 cut(s)	180
TscAI	CASTG	3 cut(s)	330, 391, 694
TseI	GCWGC	3 cut(s)	74, 317, 734
TspDTI	ATGAA	1 cut(s)	314
TspRI	CASTG	3 cut(s)	330, 391, 694
Van91I	CCANNNNNTGG	1 cut(s)	437
VneI	GTGCAC	1 cut(s)	596
VpaK11BI	GGWCC	3 cut(s)	381, 462, 571
XceI	RCATGY	1 cut(s)	242
XhoI	CTCGAG	1 cut(s)	285
XmnI	GAANNNNTTC	1 cut(s)	340
XspI	CTAG	2 cut(s)	339, 468
ZraI	GACGTC	1 cut(s)	610

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.