Rh5DG384800

Belongs to the IPP transferase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Reverse (-)
59227443 .. 59238280
10838 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG384800.1

Sequence Viewer

Length: 1020 bp
ATGGAAGAAAGCTTTTTAAATGACCATCCAGGAGTGGGACAACAACAGACTGAGCTGGCATTTGAAGTAGACAATTCCAGTTATAGTTATGACGATCTTAAAGTCATTGATCCAATTGCAGCAAACCGAATCCATCCAAATAATCACAGAAAAATTAATCAGTACCTTAGTATGTATGCTCACCATGGTGTTCTCCCTAGCAGAATTCTTCAGGGAAAGGCAGCCAAAAACTGGGGTCGAGTTGATAACTTCAGATACAATTGCTGTTTTATATGTGTGGATGCTTCTCTTCCTGTGCTGGACCGATTTGTGGATCAAAGAGTAGATTCCATGATAGATGCTGGACTCCTTGATGAAGTCTACGAAATTTTTTCTCGGAATGCAGATTATACTCGAGGTTTCCGGCAGGCCATTGGGGTTAGGGAGTTCGAAAGTTTTTTGAGTCTGTACATAACTGAAGCCAGTGACAAAGGAAATCATTTGATAGATGGGTCAATGTCCTTAAAGTCAGTAGACCTGGCTGATAAGATATTGAAAGAGAACATGAGGCTCATCCTGAATTCCTCGATTGACAGTCAACCCAACTCTGTGTTAAAAGAAGCTATTGAGAAAGTAAAACTGAACACCAGAAGACTAGTTCGTCGTCAGAAACGAAGGATAAATCGACTGGATACGTTGTTCGGATGGAACATACATTCCCTTGATGCAACTGAGTCCATTTTATGCAAATCGGATGATACATGGGCTGCAGAGGTTGTTGGACCAGCTGTTGACTTGATCAGATCTTTCCTAAATCAGGAAGCAACATTGGTGCCTAATTTGGATACCCCAAATAGCACTGAAATGAATATGATACAGAGGGACTTGTGGACTCAGTATACATGCAAGGCCTGCGGTGACAGGATCCTTAGAGGAGCTCACGAGTGGGAACAACACAAGCAGGGTCGTGGACATCGGAAACGAGTTTCTCGGCTACAAAAGTCTCGAAAATATTTGTCCGTCGAGCAGCACAGTAGTTAG

Protein Analysis

339

Amino Acids

38.96

Weight (kDa)

7.68

Isoelectric Point (pI)

36.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IPPT PF01715 21 - 218 7e-24 IPP transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 639
AccB1I GGYRCC 1 cut(s) 811
AccB7I CCANNNNNTGG 1 cut(s) 231
AccI GTMKAC 4 cut(s) 69, 360, 513, 878
AciI CCGC 1 cut(s) 894
AclWI GGATC 4 cut(s) 104, 321, 898, 911
AcsI RAATTY 3 cut(s) 204, 366, 559
AcuI CTGAAG 3 cut(s) 194, 235, 477
AfaI GTAC 2 cut(s) 164, 449
AfiI CCNNNNNNNGG 4 cut(s) 35, 231, 310, 796
AgsI TTSAA 2 cut(s) 65, 535
AhlI ACTAGT 1 cut(s) 634
AjnI CCWGG 2 cut(s) 28, 516
AleI CACNNNNGTG 1 cut(s) 186
AloI GAACNNNNNNTCC 4 cut(s) 662, 680, 694, 712
AluBI AGCT 5 cut(s) 12, 55, 602, 767, 917
AluI AGCT 5 cut(s) 12, 55, 602, 767, 917
Alw21I GWGCWC 1 cut(s) 919
Alw26I GTCTC 1 cut(s) 987
AlwI GGATC 4 cut(s) 104, 321, 898, 911
Ama87I CYCGRG 1 cut(s) 393
AoxI GGCC 2 cut(s) 408, 888
ApeKI GCWGC 4 cut(s) 119, 221, 746, 1006
ApoI RAATTY 3 cut(s) 204, 366, 559
AseI ATTAAT 1 cut(s) 156
AspS9I GGNCC 2 cut(s) 301, 761
AsuHPI GGTGA 2 cut(s) 173, 908
AsuII TTCGAA 1 cut(s) 429
AvaI CYCGRG 1 cut(s) 393
AvaII GGWCC 2 cut(s) 301, 761
BamHI GGATCC 1 cut(s) 903
BanI GGYRCC 1 cut(s) 811
BanII GRGCYC 1 cut(s) 919
BauI CACGAG 1 cut(s) 920
BbsI GAAGAC 1 cut(s) 637
Bbv12I GWGCWC 1 cut(s) 919
BbvI GCAGC 3 cut(s) 131, 233, 733
BccI CCATC 4 cut(s) 33, 141, 482, 678
BciT130I CCWGG 2 cut(s) 30, 518
BciVI GTATCC 2 cut(s) 664, 817
BclI TGATCA 1 cut(s) 777
BcoDI GTCTC 1 cut(s) 987
BcuI ACTAGT 1 cut(s) 634
BfaI CTAG 2 cut(s) 198, 635
BfmI CTRYAG 1 cut(s) 747
BfuI GTATCC 2 cut(s) 664, 817
BglII AGATCT 1 cut(s) 782
BisI GCNGC 4 cut(s) 120, 222, 747, 1007
BlsI GCNGC 4 cut(s) 121, 223, 748, 1008
Bme1390I CCNGG 2 cut(s) 30, 518
Bme18I GGWCC 2 cut(s) 301, 761
BmeT110I CYCGRG 1 cut(s) 393
BmgT120I GGNCC 2 cut(s) 301, 761
BmiI GGNNCC 2 cut(s) 813, 905
BmrFI CCNGG 2 cut(s) 30, 518
BmrI ACTGGG 1 cut(s) 241
BmsI GCATC 3 cut(s) 271, 328, 694
BmuI ACTGGG 1 cut(s) 241
BpiI GAAGAC 1 cut(s) 637
Bpu14I TTCGAA 1 cut(s) 429
BsaJI CCNNGG 1 cut(s) 184
Bsc4I CCNNNNNNNGG 4 cut(s) 35, 231, 310, 796
Bse1I ACTGG 4 cut(s) 78, 236, 462, 672
BseBI CCWGG 2 cut(s) 30, 518
BseDI CCNNGG 1 cut(s) 184
BseGI GGATG 6 cut(s) 25, 133, 286, 552, 689, 739
BseLI CCNNNNNNNGG 4 cut(s) 35, 231, 310, 796
BseMII CTCAG 3 cut(s) 42, 702, 887
BseNI ACTGG 4 cut(s) 78, 236, 462, 672
BseRI GAGGAG 1 cut(s) 927
BseXI GCAGC 3 cut(s) 131, 233, 733
BshFI GGCC 2 cut(s) 410, 890
BshNI GGYRCC 1 cut(s) 811
BsiHKAI GWGCWC 1 cut(s) 919
BsiHKCI CYCGRG 1 cut(s) 393
BsiSI CCGG 1 cut(s) 403
BslFI GGGAC 2 cut(s) 51, 875
BslI CCNNNNNNNGG 4 cut(s) 35, 231, 310, 796
BsmAI GTCTC 1 cut(s) 987
BsmFI GGGAC 2 cut(s) 51, 875
BsmI GAATGC 1 cut(s) 385
BsnI GGCC 2 cut(s) 410, 890
BsoBI CYCGRG 1 cut(s) 393
Bsp119I TTCGAA 1 cut(s) 429
Bsp1286I GDGCHC 1 cut(s) 919
Bsp1407I TGTACA 1 cut(s) 447
Bsp143I GATC 6 cut(s) 94, 109, 313, 777, 782, 903
Bsp19I CCATGG 1 cut(s) 184
BspACI CCGC 1 cut(s) 894
BspANI GGCC 2 cut(s) 410, 890
BspCNI CTCAG 3 cut(s) 43, 703, 886
BspLI GGNNCC 2 cut(s) 813, 905
BspMAI CTGCAG 1 cut(s) 751
BspPI GGATC 4 cut(s) 104, 321, 898, 911
BspT104I TTCGAA 1 cut(s) 429
BspT107I GGYRCC 1 cut(s) 811
BsrGI TGTACA 1 cut(s) 447
BsrI ACTGG 4 cut(s) 78, 236, 462, 672
BssECI CCNNGG 1 cut(s) 184
BssMI GATC 6 cut(s) 94, 109, 313, 777, 782, 903
BssNAI GTATAC 1 cut(s) 879
BssSI CACGAG 1 cut(s) 920
BssT1I CCWWGG 1 cut(s) 184
Bst1107I GTATAC 1 cut(s) 879
Bst2BI CACGAG 1 cut(s) 920
Bst2UI CCWGG 2 cut(s) 30, 518
Bst4CI ACNGT 2 cut(s) 575, 1013
Bst6I CTCTTC 1 cut(s) 294
BstAPI GCANNNNNTGC 1 cut(s) 891
BstAUI TGTACA 1 cut(s) 447
BstBI TTCGAA 1 cut(s) 429
BstC8I GCNNGC 3 cut(s) 57, 408, 892
BstDEI CTNAG 5 cut(s) 51, 167, 711, 873, 908
BstDSI CCRYGG 1 cut(s) 184
BstENI CCTNNNNNAGG 1 cut(s) 794
BstF5I GGATG 6 cut(s) 25, 133, 286, 552, 689, 739
BstKTI GATC 6 cut(s) 97, 112, 316, 780, 785, 906
BstMAI GTCTC 1 cut(s) 987
BstMBI GATC 6 cut(s) 94, 109, 313, 777, 782, 903
BstMWI GCNNNNNNNGC 1 cut(s) 891
BstNI CCWGG 2 cut(s) 30, 518
BstNSI RCATGY 1 cut(s) 885
BstSCI CCNGG 2 cut(s) 28, 516
BstSFI CTRYAG 1 cut(s) 747
BstV1I GCAGC 3 cut(s) 131, 233, 733
BstV2I GAAGAC 1 cut(s) 637
BstX2I RGATCY 2 cut(s) 782, 903
BstYI RGATCY 2 cut(s) 782, 903
BstZ17I GTATAC 1 cut(s) 879
BsuI GTATCC 2 cut(s) 664, 817
BsuRI GGCC 2 cut(s) 410, 890
BtgI CCRYGG 1 cut(s) 184
BtsCI GGATG 6 cut(s) 25, 133, 286, 552, 689, 739
BtsIMutI CAGTG 2 cut(s) 469, 837
Cac8I GCNNGC 3 cut(s) 57, 408, 892
Cfr13I GGNCC 2 cut(s) 301, 761
Csp6I GTAC 2 cut(s) 163, 448
CviAII CATG 5 cut(s) 185, 331, 544, 741, 882
CviQI GTAC 2 cut(s) 163, 448
DdeI CTNAG 5 cut(s) 51, 167, 711, 873, 908
DpnI GATC 6 cut(s) 96, 111, 315, 779, 784, 905
DpnII GATC 6 cut(s) 94, 109, 313, 777, 782, 903
DraI TTTAAA 1 cut(s) 18
DrdI GACNNNNNNGTC 1 cut(s) 639
DseDI GACNNNNNNGTC 1 cut(s) 639
Eam1104I CTCTTC 1 cut(s) 294
EarI CTCTTC 1 cut(s) 294
Ecl136II GAGCTC 1 cut(s) 917
Eco130I CCWWGG 1 cut(s) 184
Eco147I AGGCCT 1 cut(s) 890
Eco24I GRGCYC 1 cut(s) 919
Eco47I GGWCC 2 cut(s) 301, 761
Eco53kI GAGCTC 1 cut(s) 917
Eco57I CTGAAG 3 cut(s) 194, 235, 477
Eco88I CYCGRG 1 cut(s) 393
EcoICRI GAGCTC 1 cut(s) 917
EcoNI CCTNNNNNAGG 1 cut(s) 794
EcoRI GAATTC 2 cut(s) 204, 559
EcoRII CCWGG 2 cut(s) 28, 516
EcoT14I CCWWGG 1 cut(s) 184
EcoT38I GRGCYC 1 cut(s) 919
ErhI CCWWGG 1 cut(s) 184
FaeI CATG 5 cut(s) 188, 334, 547, 744, 885
FaqI GGGAC 2 cut(s) 51, 875
FatI CATG 5 cut(s) 184, 330, 543, 740, 881
FbaI TGATCA 1 cut(s) 777
FblI GTMKAC 4 cut(s) 69, 360, 513, 878
Fnu4HI GCNGC 4 cut(s) 120, 222, 747, 1007
FokI GGATG 6 cut(s) 12, 120, 293, 539, 696, 746
FriOI GRGCYC 1 cut(s) 919
Fsp4HI GCNGC 4 cut(s) 120, 222, 747, 1007
FspBI CTAG 2 cut(s) 198, 635
GluI GCNGC 4 cut(s) 120, 222, 747, 1007
HaeIII GGCC 2 cut(s) 410, 890
HapII CCGG 1 cut(s) 403
Hin1II CATG 5 cut(s) 188, 334, 547, 744, 885
HincII GTYRAC 2 cut(s) 578, 772
HindII GTYRAC 2 cut(s) 578, 772
HindIII AAGCTT 1 cut(s) 10
HinfI GANTC 6 cut(s) 129, 326, 345, 442, 713, 871
HpaII CCGG 1 cut(s) 403
HphI GGTGA 2 cut(s) 173, 908
Hpy166II GTNNAC 8 cut(s) 70, 361, 514, 578, 772, 870, 879, 950
Hpy188I TCNGA 7 cut(s) 254, 378, 648, 683, 733, 782, 957
Hpy188III TCNNGA 4 cut(s) 556, 797, 920, 984
Hpy8I GTNNAC 8 cut(s) 70, 361, 514, 578, 772, 870, 879, 950
Hpy99I CGWCG 2 cut(s) 645, 1004
HpyAV CCTTC 1 cut(s) 648
HpyCH4III ACNGT 2 cut(s) 575, 1013
HpyCH4IV ACGT 1 cut(s) 674
HpyCH4V TGCA 6 cut(s) 119, 383, 707, 726, 749, 885
HpyF10VI GCNNNNNNNGC 1 cut(s) 891
HpyF3I CTNAG 5 cut(s) 51, 167, 711, 873, 908
HpySE526I ACGT 1 cut(s) 674
Hsp92II CATG 5 cut(s) 188, 334, 547, 744, 885
Ksp22I TGATCA 1 cut(s) 777
Kzo9I GATC 6 cut(s) 94, 109, 313, 777, 782, 903
LmnI GCTCC 1 cut(s) 914
Lsp1109I GCAGC 3 cut(s) 131, 233, 733
LweI GCATC 3 cut(s) 271, 328, 694
MaeI CTAG 2 cut(s) 198, 635
MaeII ACGT 1 cut(s) 674
MaeIII GTNAC 2 cut(s) 464, 896
MalI GATC 6 cut(s) 96, 111, 315, 779, 784, 905
MboI GATC 6 cut(s) 94, 109, 313, 777, 782, 903
MboII GAAGA 4 cut(s) 17, 200, 281, 642
MfeI CAATTG 2 cut(s) 114, 259
MflI RGATCY 2 cut(s) 782, 903
MhlI GDGCHC 1 cut(s) 919
MluCI AATT 8 cut(s) 73, 114, 153, 204, 259, 366, 559, 817
MlyI GAGTC 4 cut(s) 339, 451, 722, 865
MmeI TCCRAC 1 cut(s) 739
MnlI CCTC 6 cut(s) 389, 540, 574, 745, 852, 905
MseI TTAA 5 cut(s) 17, 99, 156, 503, 593
MslI CAYNNNNRTG 2 cut(s) 186, 842
MspA1I CMGCKG 1 cut(s) 767
MspI CCGG 1 cut(s) 403
MspR9I CCNGG 2 cut(s) 30, 518
MunI CAATTG 2 cut(s) 114, 259
Mva1269I GAATGC 1 cut(s) 385
MvaI CCWGG 2 cut(s) 30, 518
MwoI GCNNNNNNNGC 1 cut(s) 891
NcoI CCATGG 1 cut(s) 184
NdeII GATC 6 cut(s) 94, 109, 313, 777, 782, 903
NlaIII CATG 5 cut(s) 188, 334, 547, 744, 885
NlaIV GGNNCC 2 cut(s) 813, 905
NmeAIII GCCGAG 1 cut(s) 949
NmuCI GTSAC 2 cut(s) 464, 896
NspI RCATGY 1 cut(s) 885
NspV TTCGAA 1 cut(s) 429
OliI CACNNNNGTG 1 cut(s) 186
PaeR7I CTCGAG 1 cut(s) 393
PceI AGGCCT 1 cut(s) 890
PcsI WCGNNNNNNNCGW 1 cut(s) 649
PctI GAATGC 1 cut(s) 385
PfeI GAWTC 2 cut(s) 129, 326
PflMI CCANNNNNTGG 1 cut(s) 231
PfoI TCCNGGA 1 cut(s) 28
PkrI GCNGC 4 cut(s) 121, 223, 748, 1008
PleI GAGTC 4 cut(s) 339, 450, 721, 865
PpsI GAGTC 4 cut(s) 339, 450, 721, 865
PshBI ATTAAT 1 cut(s) 156
Psp124BI GAGCTC 1 cut(s) 919
Psp6I CCWGG 2 cut(s) 28, 516
PspGI CCWGG 2 cut(s) 28, 516
PspN4I GGNNCC 2 cut(s) 813, 905
PspPI GGNCC 2 cut(s) 301, 761
PspXI VCTCGAGB 1 cut(s) 393
PstI CTGCAG 1 cut(s) 751
PsuI RGATCY 2 cut(s) 782, 903
PvuII CAGCTG 1 cut(s) 767
RsaI GTAC 2 cut(s) 164, 449
RsaNI GTAC 2 cut(s) 163, 448
RseI CAYNNNNRTG 2 cut(s) 186, 842
SacI GAGCTC 1 cut(s) 919
SaqAI TTAA 5 cut(s) 17, 99, 156, 503, 593
SatI GCNGC 4 cut(s) 120, 222, 747, 1007
Sau3AI GATC 6 cut(s) 94, 109, 313, 777, 782, 903
Sau96I GGNCC 2 cut(s) 301, 761
SchI GAGTC 4 cut(s) 339, 451, 722, 865
ScrFI CCNGG 2 cut(s) 30, 518
SduI GDGCHC 1 cut(s) 919
SfaNI GCATC 3 cut(s) 271, 328, 694
SfcI CTRYAG 1 cut(s) 747
Sfr274I CTCGAG 1 cut(s) 393
SfuI TTCGAA 1 cut(s) 429
SinI GGWCC 2 cut(s) 301, 761
SlaI CTCGAG 1 cut(s) 393
SmiMI CAYNNNNRTG 2 cut(s) 186, 842
SmlI CTYRAG 1 cut(s) 393
SmoI CTYRAG 1 cut(s) 393
SpeI ACTAGT 1 cut(s) 634
Sse9I AATT 8 cut(s) 73, 114, 153, 204, 259, 366, 559, 817
SseBI AGGCCT 1 cut(s) 890
SsiI CCGC 1 cut(s) 894
SspI AATATT 1 cut(s) 992
SspMI CTAG 2 cut(s) 198, 635
SstI GAGCTC 1 cut(s) 919
StuI AGGCCT 1 cut(s) 890
StyD4I CCNGG 2 cut(s) 28, 516
StyI CCWWGG 1 cut(s) 184
TaaI ACNGT 2 cut(s) 575, 1013
TaiI ACGT 1 cut(s) 677
TaqI TCGA 7 cut(s) 238, 394, 429, 566, 664, 985, 1002
TaqII GACCGA 1 cut(s) 318
TasI AATT 8 cut(s) 73, 114, 153, 204, 259, 366, 559, 817
TatI WGTACW 1 cut(s) 447
TfiI GAWTC 2 cut(s) 129, 326
Tru1I TTAA 5 cut(s) 17, 99, 156, 503, 593
Tru9I TTAA 5 cut(s) 17, 99, 156, 503, 593
TscAI CASTG 2 cut(s) 469, 844
TseFI GTSAC 2 cut(s) 464, 896
TseI GCWGC 4 cut(s) 119, 221, 746, 1006
Tsp45I GTSAC 2 cut(s) 464, 896
TspDTI ATGAA 2 cut(s) 369, 860
TspGWI ACGGA 1 cut(s) 988
TspRI CASTG 2 cut(s) 469, 844
Van91I CCANNNNNTGG 1 cut(s) 231
VpaK11BI GGWCC 2 cut(s) 301, 761
VspI ATTAAT 1 cut(s) 156
XagI CCTNNNNNAGG 1 cut(s) 794
XapI RAATTY 3 cut(s) 204, 366, 559
XceI RCATGY 1 cut(s) 885
XhoI CTCGAG 1 cut(s) 393
XmiI GTMKAC 4 cut(s) 69, 360, 513, 878
XspI CTAG 2 cut(s) 198, 635
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.